BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70900.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476225 jgi|Araly1|476225|fgenesh2_kg.2__1355__AT1G70900.1 1604 0.0
Ahg887841 jgi|Araly1|887841|Al_scaffold_0337_1 460 8e-129
> Ahg476225 jgi|Araly1|476225|fgenesh2_kg.2__1355__AT1G70900.1
Length=1074
Score = 1604 bits (868), Expect = 0.0
Identities = 1019/1088 (94%), Gaps = 25/1088 (2%)
Strand=Plus/Plus
Query 8 ttcttcttcttcttctcctttttttccaaacttttctctctGTTACTTAC-TTCCATTAT 66
|||||||||||||||| |||| |||||||||||||||||||||||||| | || | || |
Sbjct 1 TTCTTCTTCTTCTTCTTCTTTCTTTCCAAACTTTTCTCTCTGTTACTTCCATT-C-TT-T 57
Query 67 TTTCGAGCTTATTCTTATCTTCATCGCTTAAGGTTCGAATTTTCGA-ATTCGATCTC-TT 124
| |||||||| ||||||||||||||||||||| |||||| ||||| | || |||| ||
Sbjct 58 TCTCGAGCTTTTTCTTATCTTCATCGCTTAAGTTTCGAA--TTCGACA-TC--TCTCTTT 112
Query 125 TTTG-TAGC-TAT-ACCAAT-CA-CAAGTAGCTGAAATCAA-TAGTATTAAGCCAGGCTA 178
|||| | | | | | | | | ||||| || |||||| | ||||||||||||| ||
Sbjct 113 TTTGTTTTCTTGTGGTGATTGTAGC-AGTAGTTG-AATCAACT-GTATTAAGCCAGGTTA 169
Query 179 GCTAGACCAGCAAGTAAATTTGCTGGCTAGCAGGATCCTC-ATGAGCCCTCAGAGCGTAT 237
||||||||||||||| || ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 170 GCTAGACCAGCAAGT-AA-TTGCTGGCTAGCAGGATCCTCTATGAGCCCTCAAAGCGTAT 227
Query 238 CGAAGACTAGCAAATCCCTTGAGGGTGTCCATGGGGTTCATGTTGTATCTCATTCTCATT 297
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 228 CGAAGACGAGCAAATCCCTTGAGGGTGTCCATGGGGTTCATGTTGTTTCTCATTCTCATT 287
Query 298 TCGGATTTGAAAGTATTGGCCAAGTCTCTGGCTTTGAGTCTGCGGATGCAGGAACAAAGC 357
|||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 288 TCGGATTTGAGAGTATTGGCCAAGTTTCAAGCTTTGAGTCTGCGGATGCAGGAACAAAGC 347
Query 358 AGAGACTTTTCATTGAACGTGTTTGGCAACAAAGACCTCCATGCCTAAGACCCATCCATT 417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AGAGACTATTCATTGAACGTGTTTGGCAACAAAGACCTCCATGCCTAAGACCCATCCATT 407
Query 418 GCAGCATCCATGGTGATCAGAGTATCTTAGAAACAGCTGCTAATGTGATCACATCGATCC 477
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GCAGTATCCATGGCGATCAGAGTATCTTAGAAACAGCTGCTAATGTGATCACATCGATCC 467
Query 478 CTTTCATTTTCCTCGGTATGCAGGCACCGAGGAAAAACCTGAACATGAAGGTATATGCAA 537
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 468 CTTTCATTTTCCTCGGTATGCAGGCACCGAGGAAAAACCTGAACATGAAGGTGTATGCAA 527
Query 538 ACTCCTTAATCGGAGTTGGAATTGCATCGAGTTTGTATCATTCTTCAAGAGGGAAGTTT- 596
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 528 ACTCCTTAATTGGAGTTGGAATTGCATCGAGTTTGTATCATTCTTCAAGAGGGA-GATTG 586
Query 597 AGGAAGTACCTTAGATGGGCTGATTACACAATGATAGCTACAGCGACAATATGTCTAACG 656
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 587 AGGAAGTATCTTAGATGGGCTGATTACACAATGATAGCTACAGCGACAGTGTGTCTAACG 646
Query 657 AGGGCGCTTAGAGAAGAGAACCCAAAGTTCTTGATGGCTGCATCAGCTTTGGCTCTACCG 716
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 647 AGGGCTCTTAGAGAAGAGAACCCAAAGTTCTTGATGGCCGCATCAGCTTTGGCTCTACCG 706
Query 717 TTTCAGCCTCTCGTGGTATCAGCTGTTCACACTGGAATGATGGAGGTAGCATTTGCGAAA 776
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TTCCAGCCTCTCGTGGTATCAGCTGTTCACACTGGAATGATGGAGGTAGCATTTGCGAAA 766
Query 777 CGAGCCTTAGAGGATCCGGATTTGAAAATGGCTCATGATGTACACAAGATGTCTTCGTTA 836
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CGAGCCTTAGAGGATCCAGATTTGAAAATGGCTCATGATGTACACAAGATGTCTTCGTTA 826
Query 837 TTAGGCGGAGCATTGTTCATAGCTGATGATCTTTTCCCTGAAACACCATTCATTCACGCC 896
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TTGGGCGGAGCATTGTTTATAGCTGATGATCTTTTCCCTGAAACACCATTCATTCACGCC 886
Query 897 GGTTGGCATCTCGCCGCAGCCATTGGCGTTGGAACTTGCAATAAGCTTCTTCAGTAATCC 956
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 887 GGTTGGCATCTCGCCGCAGCCATTGGCGTTGGGACTTGCAATAAGCTTCTTCAGTAATCC 946
Query 957 ACAGTACCAACTATATTGAGTGATTGTGGAACTGCCACATTCTTGGCTTAATGAAACCAC 1016
|||||||||| |||||||||||||||||||||||| |||||||||| ||| ||| |||||
Sbjct 947 ACAGTACCAAATATATTGAGTGATTGTGGAACTGCTACATTCTTGGTTTAGTGAGACCAC 1006
Query 1017 TAGTACGTGTGGTTTCACTAAGCTCATAAATCAGCCGACATAACTAGTAGTAGTCATCTC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TAGTACGTGTGGTTTCACTAAGCTCATAAATCAGCCGACATAACTAGTAGTAGTCATCTC 1066
Query 1077 TATCTTTA 1084
||||||||
Sbjct 1067 TATCTTTA 1074
> Ahg887841 jgi|Araly1|887841|Al_scaffold_0337_1
Length=264
Score = 460 bits (249), Expect = 8e-129
Identities = 259/264 (98%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 690 ATGGCTGCATCAGCTTTGGCTCTACCGTTTCAGCCTCTCGTGGTATCAGCTGTTCACACT 749
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGCATCAGCGTTGGCTCTACCGTTCCAGCCTCTCGTGGTATCAGCTGTTCACACT 60
Query 750 GGAATGATGGAGGTAGCATTTGCGAAACGAGCCTTAGAGGATCCGGATTTGAAAATGGCT 809
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GGAATGATGGAGGTAGCATTTGCGAAACGAGCCTTAGAGGATCCAGATTTGAAAATGGCT 120
Query 810 CATGATGTACACAAGATGTCTTCGTTATTAGGCGGAGCATTGTTCATAGCTGATGATCTT 869
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 121 CATGATGTACACAAGATGTCTTCGTTATTGGGCGGAGCATTGTTCATAGCTGATGATATT 180
Query 870 TTCCCTGAAACACCATTCATTCACGCCGGTTGGCATCTCGCCGCAGCCATTGGCGTTGGA 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCCTGAAACACCATTCATTCACGCCGGTTGGCATCTCGCCGCAGCCATTGGCGTTGGA 240
Query 930 ACTTGCAATAAGCTTCTTCAGTAA 953
||||||||||||||||||||||||
Sbjct 241 ACTTGCAATAAGCTTCTTCAGTAA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5