BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70910.1
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926427 jgi|Araly1|926427|scaffold_201988.1 246 9e-65
> Ahg926427 jgi|Araly1|926427|scaffold_201988.1
Length=566
Score = 246 bits (133), Expect = 9e-65
Identities = 370/479 (77%), Gaps = 37/479 (8%)
Strand=Plus/Plus
Query 15 AGAGCTCGTGTGTATTGAAGCAAGT-GTTACGCGCAAATCTACATCAAACACGGTGGAGA 73
|||| | ||||||| || |||| | ||||| ||||| |||||||| ||||| || ||||
Sbjct 26 AGAGGTGGTGTGTACTGGTGCAA-TCGTTACACGCAACTCTACATCGAACACAGTAGAGA 84
Query 74 TCAGAGAATCGCGTCGAAACAAGGTTACTTTAGGATCAAGCGATTCTCCTGCGTTCCCGA 133
||| || |||||||| |||||| | |||| |||| ||| |||||||||| ||||||| |
Sbjct 85 TCAAAGTATCGCGTCTAAACAATCTCACTTCAGGAACAAACGATTCTCCTCCGTTCCCAA 144
Query 134 CCCCTCACCTCTTTTTGAAAAACATCGTGAGCTTTGATGAACAAAG-CATGTATAATCTT 192
||||| ||||| ||||| | |||||||| ||||||||||||| | | ||||||| |||
Sbjct 145 CCCCTTACCTCCTTTTGGACAACATCGTTAGCTTTGATGAAC-ACGACATGTATGTTCTC 203
Query 193 CTCTATCCAAGGCTCCAAGATCCCAACTTATGCAGTATTCTCTCCTTCAAGATCGCTTTC 252
|| |||||||||||||||||||||||||||||| |||||||||||| | |||| |||| |
Sbjct 204 CTGTATCCAAGGCTCCAAGATCCCAACTTATGCCGTATTCTCTCCTCCGAGATTGCTTCC 263
Query 253 GAAGCCAAGCGAGTTCCAGGGCCGTTGTACATCTCCTATGACGTCACATTA-ACCCCACA 311
||||||||||||||| ||| | | | || | |||||||||| || | | | |
Sbjct 264 AAAGCCAAGCGAGTTCAAGG-C--T----C--CT--T-TGACGTCACAATAGAACA-ATA 310
Query 312 AATATTCGAGGAACCAGACATGGAAACATGCGGTCTTTGCTTGTTGGAGGA--AC-A-GC 367
||| |||||||| || | | |||||| | |||||||| ||| || | | |
Sbjct 311 TATAATCGAGGAA---GA-A---A--CATGCGCTATTTGCTTGGAGGATGATGATGATGA 361
Query 368 A--CTTATTCGACATGCCAAATTGTGCGCATGTGTTTCATGGTGATTGTATCGA-TAAGT 424
| |||| ||| |||||||| ||| |||||| ||||||| |||| |||||| | | ||
Sbjct 362 ATACTTAACCGAAATGCCAAACTGTACGCATGAGTTTCATAGTGAATGTATC-ACTGCGT 420
Query 425 GGTTAAGTACAAGTAATAATTGCCCT-CTCTGTGGTGTTGAAATTATGGATGACGACGA 482
||||| ||| ||||||| ||||||| | ||| ||| | |||| |||||||| ||||
Sbjct 421 GGTTATGTATGAGTAATAGTTGCCCTAC-CTGCCGTGCTCCAATTCTGGATGACTACGA 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17627882118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5