BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70920.1
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476226 jgi|Araly1|476226|fgenesh2_kg.2__1356__AT1G70920.1 1426 0.0
> Ahg476226 jgi|Araly1|476226|fgenesh2_kg.2__1356__AT1G70920.1
Length=925
Score = 1426 bits (772), Expect = 0.0
Identities = 866/910 (95%), Gaps = 12/910 (1%)
Strand=Plus/Plus
Query 1 CTCCTTTGTCTCGCTTTTTTCTTTTGTTCTTTCACATGTGTATATACACACAGAACACAC 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCCTTTGTCTCGCTTTTTTCCTTTGTTCTTTCACATGTGTATATACACACAGAACACAC 60
Query 61 ACTTACATTTCTATTATCATATAAAACTTCAACTTTACCTTTTATCTTCCaaaaaaaaCA 120
||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 61 ACTTAAATTTCTATTATCATATAAAACTTCAACTTTACCTTTTCTCTT--ACAAAAAACA 118
Query 121 CTATCTTCTTCATCAAATTCTCTTGATTCTGTTTCTT-TTTATCCTCCTCCATGGCCCTC 179
||||||||||||||||||||| |||||||||||| || | |||||| ||||||||||||
Sbjct 119 CTATCTTCTTCATCAAATTCTATTGATTCTGTTT-TTCCTCATCCTCATCCATGGCCCTC 177
Query 180 TCACCTAATTCAAGCTCTTTAGATTTAACAATCTCAATTCCGAGCTTCTCTCCATCTCCT 239
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 178 TCACCTAATTCAAGCTCTTTAGATTTAACAATCTCAATTCCGAGTTTTTCTCCATCTCCT 237
Query 240 TCACTTGGTGATC---ATCACGGGATGAGAGATTTTGACATAAACCAAACACCAAAGACG 296
||||||||||||| |||||||| |||||||||| |||||||||||||| |||||||||
Sbjct 238 TCACTTGGTGATCATGATCACGGGGTGAGAGATTTGGACATAAACCAAACTCCAAAGACG 297
Query 297 GAAGAAGATCGTGAGTGG---ATGATCGGTGCAACACCACATGTCAACGAAGATGATAGC 353
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAAGAAGATCGTGAGTGGATCATGATCGGTGCAACACCACATGTCAACGAAGATGATAGC 357
Query 354 AACTCGGGTGGCCGGCGGCGCAAAAAGCTCCGTCTAACGAAAGAACAATCACATCTTCTT 413
||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 358 AACCCCGGTGGCCGGCGGCGCAAAAAGCTCCGTCTAACCAAAGAGCAATCACATCTTCTT 417
Query 414 GAAGAGAGTTTCATACAAAACCATACCTTAACCCCTAAGCaaaaaaaaGATTTGGCCACC 473
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 418 GAAGAGAGTTTCATACAAAATCATACCTTAACCCCTAAGCAAAAAAAAGATTTAGCCACC 477
Query 474 TTTTTGAAGCTTAGTCAAAGGCAAGTTGAGGTGTGGTTTCAAAATCGAAGAGCTCGGAGT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTTTTGAAGCTTAGTCAAAGGCAAGTTGAGGTGTGGTTTCAAAATCGAAGAGCTCGGAGT 537
Query 534 AAGCTAAAGCACACGGAAATGGAATGTGAGTATCTAAAAAGATGGTTCGGATCGTTGAAG 593
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 AAGCTAAAGCACACGGAGATGGAATGTGAGTATCTAAAAAGATGGTTCGGGTCGTTGAAG 597
Query 594 GAACAAAATCGACGGCTACAAATAGAAGTTGAAGAACTACGAGCGCTAAAGCCATCATCG 653
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 GAGCAAAATCGACGGCTACAAATAGAAGTTGAAGAACTACGAGCTCTAAAGCCATCATCG 657
Query 654 ACCTCGGCTTTAACCATGTGTCCTCGGTGTGAACGTGTGACTGATGCAGTAGATAATGAC 713
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 658 ACCTCGGCTTTAACCATGTGTCCTCGGTGTGAACGTGTGACTGATGCAGCAGATAATGAC 717
Query 714 TCTAATGCCGTTCAAGAGGGGGCAGTTCTTAGCAGCCGGTCACGGATGACAATTTCCTCT 773
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 718 TCTAATGCCGTTCAAGAGGGTGCAGTTCTAAGCAGCCGGTCACGGATGACAATTTCCTCT 777
Query 774 TCCTCTTCCCTCTGTTGACTGGTTTGGTCGAAGTCAAAAGTCAAAAGATA-AA-CGCCTG 831
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 778 TCCTCTTCTCTCTGTTGACTGGTTTGGTCGAAGTCAAAAGTCAAAAGATAGAAACGCCTG 837
Query 832 TTTCGGGGTAAAAAGCAAAGATTTGATGATGATTAGGAGGATTTTGTGTATAGTTTGCTA 891
|||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| ||||
Sbjct 838 TTTCGGGGTACAAAGCAAAGATTTGATGATGATTAGGAAGATTTTGTGCATAGTTCGCTA 897
Query 892 ATTATTTATT 901
|||| |||||
Sbjct 898 ATTACTTATT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38580392004
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5