BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70949.1
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926432 jgi|Araly1|926432|scaffold_201993.1 353 3e-97
> Ahg926432 jgi|Araly1|926432|scaffold_201993.1
Length=265
Score = 353 bits (191), Expect = 3e-97
Identities = 232/250 (93%), Gaps = 9/250 (4%)
Strand=Plus/Plus
Query 1 ATGTCATGTGctttttttcttcttctttttttgtctttttcttGTCAGAGGATGCTCACG 60
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 21 ATGTCATGTGC-TTTTTTCTTCTTCTTTTTTTGTCTTCTTCTTGTCAGAGGATGCTCACG 79
Query 61 TTCTCCGTTATCAGTCCTCCCGTTTATTTAGGGGTTTATCAACGGTCCAGATTCTTTGC- 119
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 80 TTCTCCGTTATCA--CCTCCCGTTTATTTA-GGGTTTATCAACGGTCCAGATTCTTCGCT 136
Query 120 TATAAAGTTTAGACGGCGGTTTACTGTTTTAACGGCAGATGTGGATCGATACCCTGAAAG 179
|||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 137 TATAAAATTTAGACGGCGGTTTACTGTTTTAACGGCAGATGTGGATCGAAACTCTGAAAG 196
Query 180 TGGCAGGGTTAT-GCCACGTCATAATAATGGACTAAGGCTCACTCAAC-AGTATTATAA- 236
||||||||| || |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 197 TGGCAGGGT-ATTGCCACGTCATAATAATGGACTAAGGCCCACTCATTGAGTATTATAAA 255
Query 237 TAAGATCCAA 246
|||| |||||
Sbjct 256 TAAGGTCCAA 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9203370901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5