BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70950.1
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926433 jgi|Araly1|926433|scaffold_201994.1 2080 0.0
> Ahg926433 jgi|Araly1|926433|scaffold_201994.1
Length=1480
Score = 2080 bits (1126), Expect = 0.0
Identities = 1370/1484 (92%), Gaps = 32/1484 (2%)
Strand=Plus/Plus
Query 70 TTATTTTCCTTGAGATCAATTATGGCAGGAGAGATTCAGGACCCGTTTAGTCTTAGTTTT 129
||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 1 TTA-TTTCCTTGAGATCAATTATGGCAGGTGAGATTCAAGAACCGTTTAGTCTTAGTTTT 59
Query 130 CAGGGGAACTCTATCCACTCTGGATCGATATCCTTTGGAAGATTCGAGAAAGAGGGTTTA 189
|||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 60 CAGGGGAATTCTATCCACTCTGGATCTATATCGTTCGGAAGATTCGAGAAAGAGGGTTTA 119
Query 190 TCATGGGAGAAGAGGTCATCTTTTTCTCACAATAGGTATCTTGAAGAAGTTGACAAGTGT 249
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCATGGGAGAAGAGATCATCTTTTTCTCACAATAGGTATCTTGAAGAAGTTGACAAGTGT 179
Query 250 TCTAAACCTGGCTCTGTTACTGAGATGAAAGCACATTTTGAAGCTCATTTCAAGAAGAAA 309
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 TCTAAACCTGGTTCTGTTACTGAGATGAAAGCACATTTTGAGGCTCATTTCAAGAAGAAA 239
Query 310 GGAATCCGATTTCCAGCTTCTCTTGAATCTCAAACTTGGGGAGTTCATCAAACAAGTAAT 369
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 GGAATCCGATTTCCGGCTTCTCTTGAATCTCAAACTTGGGGAGTTCATCAAACAAGTGGT 299
Query 370 GAGCCTGATGATGAAGCTGTTCATGCTACTGAAAGTTTCGAGGATTATCGATCTGATGGG 429
|| || |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 300 GAACCGGATGATGAAGCTGTCCATGCAACTGAAAGTTTCAAGGATTATCGATCTGATGGG 359
Query 430 AGTTTCTCGGAGGATACTAGTCAATCGAATAGTGTTTGTAACTATAGCCATGAACAAGAG 489
|||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||
Sbjct 360 AGTTTCTCGGAGAATACTAGTCGATCAAATAGTGTTTGTAACTATAGCCTTGAACAAGAG 419
Query 490 AAATGTGGTCAAGGAAAGAGTCAATGTGAGTTTGATGAGGAAAGTGATCATTGTGTTAGC 549
||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| ||
Sbjct 420 AAATGTGGTCAAGGAAAGAGTCAATGTGAGTATGATGAGGAAAGTGATAAATGTGTTTGC 479
Query 550 TATGATGAGATTCTAGTGAATTCTGATGAAGTTATTGAGCTTGATGAAGAAGAAGGCGGT 609
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 480 TATGATGAGATTCTAGTGAATTCTGATGAAGTGATTGAGCTTGATGAAGAAGAAGGTGGT 539
Query 610 GGTGACCACGGGAGGGTTGCTGATCTTGTTGAGTGTGAGAATCTTGGACCTCCTGAGATG 669
||||||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||
Sbjct 540 GGTGACCACGGGACGGTTGCTGTTCCTGTTGAGTGTGAGGATCTTGGACCTCCTGAGATG 599
Query 670 CCACAAGAGATTGTGATTCAAGATTCTGCTTTAGTTGAAGAGGCGGGATCGAAACTCGAT 729
||||||||||||| |||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 600 CCACAAGAGATTGAGATTCAAGATTCTGTTTTAGTTGAAGAGACCGGATCGAAACTCGAT 659
Query 730 GAACATGCTT-CAAAAAAGCCAT-CTAATTCTATGGAAACACCCTCCT-C-C----TCT- 780
||||||| || |||||||||||| | || ||| |||||||||||||| | | |||
Sbjct 660 GAACATG-TTCCAAAAAAGCCATAC-GATGCTACGGAAACACCCTCCTCCTCTGTATCTG 717
Query 781 G-T--AA---AC--------GTGAAACCTATTATTCCTAATGATGTGCGTGTGACTAAAG 826
| | || || |||||||||| ||||||| ||||||||||||||| |||||
Sbjct 718 GATCGAAGTCACGGGAGAAGGTGAAACCTAGTATTCCTCATGATGTGCGTGTGATTAAAG 777
Query 827 CTTCTACAAAGGGACATGATGTAACGCCAAAAGCTGCTTCAAGGAGGACAAAGGGTTCTT 886
||||||||||| || || ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 778 CTTCTACAAAGAGAGATAATGTAACACCAAAAGCTGCTTCAAGGAGGACAAATGGTTCTT 837
Query 887 CTTTAAGTTCTAATTCTAAAACCAATGTAGATGCCAAGAGCCAAAAGGAACTAAGACCGA 946
||||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||
Sbjct 838 CTTTAAGTTCTAATTATAAAACTAATGTAGATGGCAAGAGCCAAAAGGAATTAAGACCGA 897
Query 947 AGAAAACCATTGAGTCTCAACCTAAATCATCGAACAAAACCGAGACTCGACCTCCTATTG 1006
|||||||||||||||||||||||||| ||||||| |||| |||||||||| |||||||||
Sbjct 898 AGAAAACCATTGAGTCTCAACCTAAAACATCGAAGAAAATCGAGACTCGAACTCCTATTG 957
Query 1007 CTACGAACAGGTGCAAGACTAGTACCACTTCTTCTAAGCTGGAGATGAGTACAGGTTCTA 1066
|||| ||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 958 CTACAAACAGGTGCAAGAGTAGTACCACTTGTGCTAAGCTGGAGATGAGTACAGGTTCTA 1017
Query 1067 CTAGTTTCCGTTTCAAATGTAGCGAACGAGCTGAGAAGAGAAAAGAGTTCTATATGAAAC 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTAGTTTCCGTTTCAAATGTAGCGAACGAGCTGAGAAGAGAAAAGAGTTCTATATGAAAC 1077
Query 1127 TGGAGGAGAAAATACATGCTAAGAAAACAGAAACAAACCAAGTTCAGGCCAAAACACAGC 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGGAGGAGAAAATACATGCTAAGAAAACAGAAACAAACCAAGTTCAGGCCAAAACACAGC 1137
Query 1187 AAAAGGCAGAAGCTGAGATTAAACAGTTCAGGAAAAGCCTCAATTTTAAGGCAACACCAA 1246
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 AAAAGGTAGAAGCTGAGATTAAACAGTTCAGGAAAAGCCTCAACTTTAAGGCAACACCAA 1197
Query 1247 TGCCTTCATTCTACAACATCGGTACTAGACCGGTGTCTCATAACAAGACCGAGCC-ATCT 1305
|||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| | |
Sbjct 1198 TGCCTTCATTCTACAACACCGGTACTAGACCGGCGTCTCATCACAAGACCGAGCCCAG-T 1256
Query 1306 AAAGTAGCACAATCAAGATCACGACCAGCGACCTCAGCCTCAATTACAAACAGGGCGGTC 1365
|||||||||| ||||||||||| ||| |||||||||||||||||||||||| |||| |||
Sbjct 1257 AAAGTAGCACCATCAAGATCACAACCCGCGACCTCAGCCTCAATTACAAACCGGGCAGTC 1316
Query 1366 ACCAGAGTTTCTTATAAACACGGTTTTGAAGAAGCTGAAATGGTAAAGGTAATGGTCAGT 1425
|| ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1317 ACAAGAGTTTCTTACAAACACGGTTTCGAAGAAGCTAAAATGGTAAAGGTAATGGTCAGT 1376
Query 1426 AATAGAAAACAGAGTGCGGCTAAAGATTCAGATTTGCAAAAGGGTAATCTTATGGCGGTT 1485
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1377 AATAGAAAACAAAGTGCGGCTAAAGATTCGGATTTGCAAAAGGGTAATCTTATGGCTGTA 1436
Query 1486 GAAATGAAACAACAGATT-G---GTGCTCGAAGAAGCAGAAACT 1525
||||| |||||| || || | |||||||||||||| ||||||
Sbjct 1437 GAAATAAAACAAAAGGTTAGCTAGTGCTCGAAGAAGCGGAAACT 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61630016410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5