BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70960.1
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926360 jgi|Araly1|926360|scaffold_201921.1 754 0.0
Ahg339268 jgi|Araly1|339268|fgenesh1_pg.C_scaffold_2001367 723 0.0
Ahg926355 jgi|Araly1|926355|scaffold_201916.1 684 0.0
Ahg926439 jgi|Araly1|926439|scaffold_202000.1 555 3e-157
Ahg926363 jgi|Araly1|926363|scaffold_201924.1 243 3e-63
> Ahg926360 jgi|Araly1|926360|scaffold_201921.1
Length=1188
Score = 754 bits (408), Expect = 0.0
Identities = 934/1174 (80%), Gaps = 92/1174 (8%)
Strand=Plus/Plus
Query 1 ATGGTGAACACAAGTTTCGAAACACTTCCTAGACATATGCAAATGGAGATTCTGTCACGG 60
||||||||||||||||||||||||| |||| || | ||||| ||||||||||| |||||
Sbjct 21 ATGGTGAACACAAGTTTCGAAACACCTCCT-GA-A-ATGCATGTGGAGATTCTGGCACGG 77
Query 61 GTGCCTCTGAAATTTTTAATGAAATTCATGTGCGTCTCAAAGAAATGGGCATCTATCATT 120
|||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 78 TTGCCTCTGAAATCCTTAATGAAATTCATGTCCGTCTCAAAGAAATGGGAATCTATCATA 137
Query 121 CGTGGGGAAGAATTCAGA-GAAGATTACTTGTTCCAATCAATGAAAAGGCCTCGAGTGTT 179
||||||||| |||||||| | ||||||||| |||||||||||| |||||||||||||||
Sbjct 138 CGTGGGGAACAATTCAGACG-TGATTACTTGATCCAATCAATGACAAGGCCTCGAGTGTT 196
Query 180 GTTCGTCATCGATCATAGAGAATACCTCCCTATCAAACCCGAAGCGTTCTTTCACTCTGT 239
||||||| | ||| |||| | | || | | |||||||||||||| ||||||| |||||
Sbjct 197 GTTCGTCGCCAATCGTAGATACTTCCACAATTTCAAACCCGAAGCGCTCTTTCATTCTGT 256
Query 240 TTATCAAGAAGATCAACCATTGTTGTTGTCTGGTAAACAGC-GTATGCGTACATTCGAAA 298
|||||||| || |||||| || ||| ||| || ||||| | |||||||||| |||||
Sbjct 257 TTATCAAG-AG--GAACCATCGTCGTTATCTAGTGTACAGCAG-ATGCGTACATACGAAA 312
Query 299 CACCACTTGT-TCAA-GTTTTTCAACCCATCCGTGGTTTGATCTGTCAACAAGGATATGG 356
|||||||| | | || |||| ||||||| ||||||||||||| ||||| |||||| ||
Sbjct 313 CACCACTT-TAT-AAGGTTTCTCAACCCGTCCGTGGTTTGATATGTCATCAAGGAGATAC 370
Query 357 TAAGATTGTGATTTGCAATCCGGGTTTAAAAAAGTTTCGGAGTTTACCGCAGATCAAAGT 416
||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 371 TAATATTGTGATTTGCAATCCGGGTTTGAAAAAGTTTCGGAACTTACCGCAGATCGAAGT 430
Query 417 TCATAAAGGAGCACCCATGAGAACtttttttGGATACGATGAAGATAAGGATGTATTCAA 476
| | || ||| ||||||||| |||||| ||||| ||||||| |||| ||||||||||
Sbjct 431 GCCTGAATTTGCATCCATGAGAAGTTTTTTCGGATATGATGAAGTTAAGAATGTATTCAA 490
Query 477 GGTGTTATGTAT-A-ACA--T-G-----GCTCCGA-AA-TGGT-AA-GCG--AT-CAGAA 519
|||||||||||| | ||| | | || || || | | || | | || || ||
Sbjct 491 GGTGTTATGTATAACACAGTTAGTAAAATATCAGACAACTACTGAAGGTGATATACACAA 550
Query 520 -GT-A-A---G-T-AAGGAATATCTTGTATACACGATGGGATCGGATGAAGAATCTTCTT 571
|| | | | | ||| | ||| ||||||||| || ||||||||| ||||||||||
Sbjct 551 GGTGAGATCGGATGTAGG-ACATCAGGTATACACGGTGAGATCGGATGTGGAATCTTCTT 609
Query 572 CTTGG--AGGCTGATCACATGTGAGCATGACCATGCACCAGTTACCGAAGGACTTTTTAA 629
||||| ||| |||| ||||| | |||| || || ||||||| |||||||| |||||
Sbjct 610 CTTGGAAAGG--GATCGCATGTAATTATGATTATTCAGCAGTTACTGAAGGACTATTTAA 667
Query 630 AGGAGGAGTGTTGTACTATGGAGCTAAATCCAATAATGGCAAATCAGTGGTAATGAGCTT 689
|||||| | ||||||||||||||| | |||||||||| | |||| ||||||||||| ||
Sbjct 668 AGGAGGTTTCTTGTACTATGGAGCTCAGTCCAATAATGACCAATCTGTGGTAATGAGTTT 727
Query 690 CAACGTGAATTCTGAAGATTTTAGTGTCATTGAGTTG------GAAGTCGAAATT-AGTC 742
|||||||| |||||||||||||||||||||||||||| |||||||| || | |
Sbjct 728 CAACGTGAGTTCTGAAGATTTTAGTGTCATTGAGTTGCCTAACGAAGTCGACTTTGA-TA 786
Query 743 CTTATTGGAGATTGGTGAATTACAA-GGGGGATATTGCCCTA----ATGA--ACAACATT 795
| |||||| ||||||||||||||| ||||| ||||||| | |||| ||||| ||
Sbjct 787 ATAATTGGAAATTGGTGAATTACAAAGGGGG-TATTGCCTTGGTGGATGAGGACAACTTT 845
Query 796 GAGGAT--AGCTTGTATCACAGTCGAGAATTTGAAATGTGGGTTAGGAACGAGGTTACTG 853
|| || | |||| || || | ||| ||| |||| | | |||||||||| ||| |||
Sbjct 846 GAC-ATTCA-CTTGAATGGCAATAGAGTTTTTAAAATTTTGTTTAGGAACGAAGTTGCTG 903
Query 854 GAAATTGGGACAGA-ACTAGCATTAAGATTTCTCATTGGAATGGAACTGTTGATGGTAA- 911
|||||||||| | | | | |||| ||||| ||| |||||| | ||| |||||| ||
Sbjct 904 GAAATTGGGAGATAGAG-ACCATTGAGATTCCTCGTTGGAAAGAAACGGTTGAT---AAC 959
Query 912 GACGTTT-T-ATTTCAAAGGTACTATTGGAACAAAAGAACTT---GCTTTCGCACCAGAC 966
|| | || | |||| |||||||| ||||||||| ||||||| | ||||| |||| ||
Sbjct 960 GAGGATTATCATTTTAAAGGTACCATTGGAACAGGAGAACTTCTTGTTTTCGTACCA-AC 1018
Query 967 T-ATTGGTT-T-GG---GGAACAACATTTTGTGTCGTATTACGAT-ACAGAAACAAAGAA 1019
| || ||| | || || | || | | || | ||||| |||| | || ||||||||
Sbjct 1019 TCAT-GGTACTCGGTTCGGGAGAAGAGT--GT-T-GTATTGCGATGA-AGCCACAAAGAA 1072
Query 1020 CCTCAGAAGATTTGATATTGAAG---GAATGGTTGATCAAGATGATTTTGTTCGAACCTT 1076
||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||||
Sbjct 1073 CCTCAGAAGATTTGATATTGAAGAAAGAATGATTGATGAAGATCATATTGTTCGAACCTT 1132
Query 1077 CTTTGATCATGTTGATAGTACTTGGCTTATATGA 1110
|||||||||||||||||||||||||||||| |||
Sbjct 1133 CTTTGATCATGTTGATAGTACTTGGCTTATGTGA 1166
> Ahg339268 jgi|Araly1|339268|fgenesh1_pg.C_scaffold_2001367
Length=1713
Score = 723 bits (391), Expect = 0.0
Identities = 913/1151 (79%), Gaps = 92/1151 (8%)
Strand=Plus/Plus
Query 1 ATGGTGAACACAAGTTTCGAAACACTTCCTAGACATATGCAAATGGAGATTCTGTCACGG 60
||||||||||||||||||||||||| |||| || | ||||| ||||||||||| |||||
Sbjct 1 ATGGTGAACACAAGTTTCGAAACACCTCCT-GA-A-ATGCATGTGGAGATTCTGGCACGG 57
Query 61 GTGCCTCTGAAATTTTTAATGAAATTCATGTGCGTCTCAAAGAAATGGGCATCTATCATT 120
|||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 58 TTGCCTCTGAAATCCTTAATGAAATTCATGTCCGTCTCAAAGAAATGGGAATCTATCATA 117
Query 121 CGTGGGGAAGAATTCAGA-GAAGATTACTTGTTCCAATCAATGAAAAGGCCTCGAGTGTT 179
||||||||| |||||||| | ||||||||| |||||||||||| |||||||||||||||
Sbjct 118 CGTGGGGAACAATTCAGACG-TGATTACTTGATCCAATCAATGACAAGGCCTCGAGTGTT 176
Query 180 GTTCGTCATCGATCATAGAGAATACCTCCCTATCAAACCCGAAGCGTTCTTTCACTCTGT 239
||||||| | ||| |||| | | || | | |||||||||||||| ||||||| |||||
Sbjct 177 GTTCGTCGCCAATCGTAGATACTTCCACAATTTCAAACCCGAAGCGCTCTTTCATTCTGT 236
Query 240 TTATCAAGAAGATCAACCATTGTTGTTGTCTGGTAAACAGC-GTATGCGTACATTCGAAA 298
|||||||| || |||||| || ||| ||| || ||||| | |||||||||| |||||
Sbjct 237 TTATCAAG-AG--GAACCATCGTCGTTATCTAGTGTACAGCAG-ATGCGTACATACGAAA 292
Query 299 CACCACTTGT-TCAA-GTTTTTCAACCCATCCGTGGTTTGATCTGTCAACAAGGATATGG 356
|||||||| | | || |||| ||||||| ||||||||||||| ||||| |||||| ||
Sbjct 293 CACCACTT-TAT-AAGGTTTCTCAACCCGTCCGTGGTTTGATATGTCATCAAGGAGATAC 350
Query 357 TAAGATTGTGATTTGCAATCCGGGTTTAAAAAAGTTTCGGAGTTTACCGCAGATCAAAGT 416
||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 351 TAATATTGTGATTTGCAATCCGGGTTTGAAAAAGTTTCGGAACTTACCGCAGATCGAAGT 410
Query 417 TCATAAAGGAGCACCCATGAGAACtttttttGGATACGATGAAGATAAGGATGTATTCAA 476
| | || ||| ||||||||| |||||| ||||| ||||||| |||| ||||||||||
Sbjct 411 GCCTGAATTTGCATCCATGAGAAGTTTTTTCGGATATGATGAAGTTAAGAATGTATTCAA 470
Query 477 GGTGTTATGTAT-A-ACA--T-G-----GCTCCGA-AA-TGGT-AA-GCG--AT-CAGAA 519
|||||||||||| | ||| | | || || || | | || | | || || ||
Sbjct 471 GGTGTTATGTATAACACAGTTAGTAAAATATCAGACAACTACTGAAGGTGATATACACAA 530
Query 520 -GT-A-A---G-T-AAGGAATATCTTGTATACACGATGGGATCGGATGAAGAATCTTCTT 571
|| | | | | ||| | ||| ||||||||| || ||||||||| ||||||||||
Sbjct 531 GGTGAGATCGGATGTAGG-ACATCAGGTATACACGGTGAGATCGGATGTGGAATCTTCTT 589
Query 572 CTTGG--AGGCTGATCACATGTGAGCATGACCATGCACCAGTTACCGAAGGACTTTTTAA 629
||||| ||| |||| ||||| | |||| || || ||||||| |||||||| |||||
Sbjct 590 CTTGGAAAGG--GATCGCATGTAATTATGATTATTCAGCAGTTACTGAAGGACTATTTAA 647
Query 630 AGGAGGAGTGTTGTACTATGGAGCTAAATCCAATAATGGCAAATCAGTGGTAATGAGCTT 689
|||||| | ||||||||||||||| | |||||||||| | |||| ||||||||||| ||
Sbjct 648 AGGAGGTTTCTTGTACTATGGAGCTCAGTCCAATAATGACCAATCTGTGGTAATGAGTTT 707
Query 690 CAACGTGAATTCTGAAGATTTTAGTGTCATTGAGTTG------GAAGTCGAAATT-AGTC 742
|||||||| |||||||||||||||||||||||||||| |||||||| || | |
Sbjct 708 CAACGTGAGTTCTGAAGATTTTAGTGTCATTGAGTTGCCTAACGAAGTCGACTTTGA-TA 766
Query 743 CTTATTGGAGATTGGTGAATTACAA-GGGGGATATTGCCCTA----ATGA--ACAACATT 795
| |||||| ||||||||||||||| ||||| ||||||| | |||| ||||| ||
Sbjct 767 ATAATTGGAAATTGGTGAATTACAAAGGGGG-TATTGCCTTGGTGGATGAGGACAACTTT 825
Query 796 GAGGAT--AGCTTGTATCACAGTCGAGAATTTGAAATGTGGGTTAGGAACGAGGTTACTG 853
|| || | |||| || || | ||| ||| |||| | | |||||||||| ||| |||
Sbjct 826 GAC-ATTCA-CTTGAATGGCAATAGAGTTTTTAAAATTTTGTTTAGGAACGAAGTTGCTG 883
Query 854 GAAATTGGGACAGA-ACTAGCATTAAGATTTCTCATTGGAATGGAACTGTTGATGGTAA- 911
|||||||||| | | | | |||| ||||| ||| |||||| | ||| |||||| ||
Sbjct 884 GAAATTGGGAGATAGAG-ACCATTGAGATTCCTCGTTGGAAAGAAACGGTTGAT---AAC 939
Query 912 GACGTTT-T-ATTTCAAAGGTACTATTGGAACAAAAGAACTT---GCTTTCGCACCAGAC 966
|| | || | |||| |||||||| ||||||||| ||||||| | |||||||||| ||
Sbjct 940 GAGGATTATCATTTTAAAGGTACCATTGGAACAGGAGAACTTCTTGTTTTCGCACCA-AC 998
Query 967 T-ATTGGTT-T-GG---GGAACAACATTTTGTGTCGTATTACGAT-ACAGAAACAAAGAA 1019
| || ||| | || || | || | | || | ||||| |||| | || ||||||||
Sbjct 999 TCAT-GGTACTCGGTTCGGGAGAAGAGT--GT-T-GTATTGCGATGA-AGCCACAAAGAA 1052
Query 1020 CCTCAGAAGATTTGATATTGAAG---GAATGGTTGATCAAGATGATTTTGTTCGAACCTT 1076
||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||||
Sbjct 1053 CCTCAGAAGATTTGATATTGAAGAAAGAATGATTGATGAAGATCATATTGTTCGAACCTT 1112
Query 1077 CTTTGATCATG 1087
|||||||||||
Sbjct 1113 CTTTGATCATG 1123
> Ahg926355 jgi|Araly1|926355|scaffold_201916.1
Length=1079
Score = 684 bits (370), Expect = 0.0
Identities = 657/790 (83%), Gaps = 42/790 (5%)
Strand=Plus/Plus
Query 1 ATGGTGAACACAAGTTTCGAAACACTTCCTAGACATATGCAAATGGAGATTCTGTCACGG 60
|||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 24 ATGGTGAAAACAAGTTTCGAAACACTTCCTTTAGATATGCAAATGGAGATTCTGTCACGA 83
Query 61 GTGCCTCTGAAATTTTTAATGAAATTCATGTGCGTCTCAAAGAAATGGGCATCTATCATT 120
|||||||||||| |||||| || |||||||||||||||||||||||||||||||||
Sbjct 84 TTGCCTCTGAAATCCTTAATGGGATGCATGTGCGTCTCAAAGAAATGGGCATCTATCATC 143
Query 121 CGTGGGGAAGAATTCAGAGAAGATTACTTGTTCCAATCAATGAAAAGGCCTCGAGTGTTG 180
||| | ||| ||||||||| |||||||| || || |||| ||||||||||||||||
Sbjct 144 CGTTCGAAAGCATTCAGAGATCATTACTTGAGCCGGTCGATGACAAGGCCTCGAGTGTTG 203
Query 181 TTCGTCATCGATCATAGAGAATACCTCCCTA-TCAAACCCGAAGCGTTCTTTCACTCTGT 239
|||||| | |||||||||||| || | | ||| | |||||||||||||| |||||||
Sbjct 204 TTCGTCGCCAATCATAGAGAATTCC-ACAAATTCACATCCGAAGCGTTCTTTTACTCTGT 262
Query 240 TTATCAAGAAGATCAACCATTGTTGTTGTCTGGTAAACAGC-GTATGCGTA-CATTCGAA 297
|||||||||||| ||||||||| ||||||||||||||||| | ||||||| | |||
Sbjct 263 TTATCAAGAAGAGGAACCATTGTGGTTGTCTGGTAAACAGCAG-ATGCGTAGC-GAAGAA 320
Query 298 ACACCACTTGTTCAAGTTTTTCAACCCATCCGTGGTTTGATCTGTCAACAAGGATATGGT 357
||||||| || |||||| ||||||||||| |||| ||||||||||||||||| || |
Sbjct 321 GTACCACTTCTTAAAGTTTCTCAACCCATCCTTGGTCTGATCTGTCAACAAGGAAATACT 380
Query 358 AAGATTGTGATTTGCAATCCGGGTTTAAAAAAGTT-TCGGAGTTTACCGCAGATCAAAGT 416
|||||||| || ||||||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct 381 AAGATTGTTATATGCAATCCGGGTTCGAAAAA-TTGTCGGACTTTACCGCAGATCAAAGT 439
Query 417 TCATAAAGGAGCACCCATGAGAACtttttttGGATACGATGAAGATAAGGATGTATTCAA 476
| |||||||||| |||||| || |||||| ||||||||| |||||||||||||||||||
Sbjct 440 GCCTAAAGGAGCATCCATGACAAGTTTTTTCGGATACGATAAAGATAAGGATGTATTCAA 499
Query 477 GGTGTTATGTATAACATGGCTCCGAAATGGTAAGCGATCAG-AAGTAAGTAAGGAATATC 535
|||||||||||||||| ||| | || | | || || || | ||| |||
Sbjct 500 GGTGTTATGTATAACA--------AAA-GC-AA-CTA--AGGAA-TA--TCAGG--TAT- 540
Query 536 TTGTATACACGATGGGATCGGATGAAGAATCTTCTTCTTGGAGGCTGATCACATGTGAGC 595
||| | | || ||||||||||||||||||||| |||||| | ||||| || |||||
Sbjct 541 --GTA--CG-G-TGAGATCGGATGAAGAATCTTCTTTTTGGAGACCGATCAGATATGAGC 594
Query 596 ATGACCATGCACCAGTTACCGAAGGACTTTTTAAAGGAGGAGTGTTGTACTATGGAGCTA 655
||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 595 ATGACCATGCACCAGTTACTGAAGGACTATTTAAAGGAGGAGTTTTGTACTATGGAGCTC 654
Query 656 AATCCAATAATGGCAAATCAGTGGTAATGAGCTTCAACGTGAATTCTGAAGATTTTAGTG 715
|||| || || |||||| ||||| |||||||||||||||| ||||||||| |||||||
Sbjct 655 TGTCCACTAGTGACAAATCTGTGGTCATGAGCTTCAACGTGAGTTCTGAAGAGTTTAGTG 714
Query 716 TCATTGAGTTG------GAAGTCGAAATT-AGTCCTTATTGGAGATTGGTGAATTACAAG 768
||||||| ||| |||||| ||||| | || | |||||| |||||||||||||||
Sbjct 715 TCATTGAATTGCCTAACGAAGTCAAAATTGA-TCATCATTGGACATTGGTGAATTACAAA 773
Query 769 GGGGATATTG 778
||||||||||
Sbjct 774 GGGGATATTG 783
> Ahg926439 jgi|Araly1|926439|scaffold_202000.1
Length=640
Score = 555 bits (300), Expect = 3e-157
Identities = 473/554 (85%), Gaps = 22/554 (4%)
Strand=Plus/Plus
Query 517 GAAGTAAGTAAGGAATATCTTGTATACACGATGGGATCGGATGAAGAATCTTCTTCTTGG 576
||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 93 GAAGTAACAAAGGAATATCAGGTATACACGATGACATCGGATGAAGAATCTTCTTCTTGG 152
Query 577 AGGCTGATCACATGTGAGCATGACCATGCACCAGTTACCGAAGGACTTTTTAAAGGAGGA 636
|| | ||||| |||| |||||||||||||||||||||| |||||||| | ||||||||||
Sbjct 153 AGACCGATCATATGTAAGCATGACCATGCACCAGTTACTGAAGGACTATGTAAAGGAGGA 212
Query 637 GTGTTGTACTATGGAGCTAAATCCAATAATGGCAAATCAGTGGTAATGAGCTTCAACGTG 696
|| ||||||||||||||||| ||||||| || |||||| |||||||||||||||||||||
Sbjct 213 GTTTTGTACTATGGAGCTAAGTCCAATAGTGACAAATCTGTGGTAATGAGCTTCAACGTG 272
Query 697 AATTCTGAAGATTTTAGTGTCATTGAG-T---T--GGAAGTCGAAATTAGTCCTTATTGG 750
| ||||||||||||||||||||||||| | | |||||||||| ||| || | |||||
Sbjct 273 AGTTCTGAAGATTTTAGTGTCATTGAGTTGCCTAAGGAAGTCGAACTTATTCATCATTGG 332
Query 751 AGATTGGTGAATTACAAGGGGGATATTGCCCTAATGAACAACATTGAG---GATAGCTTG 807
||||||||||||||||| |||||||| ||| ||||| || || |||| |||| |||
Sbjct 333 AGATTGGTGAATTACAAAGGGGATATCGCCTTAATGCACTACGGTGAGTACTATAGATTG 392
Query 808 TA-TCACAGTCGAG-AATTTGAAATGTGGGTTAGGAACGAGGTT-ACTGGAAATTGGGAC 864
| | |||| ||| || ||| ||||||||||||||||||||| | ||||||||||||
Sbjct 393 -ACCCGCAGTGGAGTAA-CTGACATGTGGGTTAGGAACGAGGTTGA-TGGAAATTGGGAG 449
Query 865 AG-AACTAGCATTAAGATTTCTCATTGGAATGGAACTGTTGATGGTAA-GACGTTTTATT 922
|| ||| ||||||||||||||||||||||| | |||| ||||| ||| || |||| |||
Sbjct 450 AGAAAC-AGCATTAAGATTTCTCATTGGAAAGAAACTTTTGATAATAAGGA-GTTTCATT 507
Query 923 TCAAAGGTACTATTGGAACAAAAGAACTTGCTTTCGCACCAGACT-ATTGGTTTGGGGAA 981
|||||| ||| |||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 508 TCAAAGCTACCATTGGAACAAAAGAACTTGCTTTCGCACCACACCCATTGGATTGGGGAA 567
Query 982 CAACAT-TTTGTGTCGTATTACGATACAGAAACAAAGAACCTCAGAAGATTTGATATTGA 1040
|||| | ||||||| || || |||| |||| ||| |||| ||||||||||||| |||||
Sbjct 568 CAAC-TCTTTGTGTTGTTTTCCGATGCAGACGCAACGAACTTCAGAAGATTTGAGATTGA 626
Query 1041 AGGAATGGTTGATC 1054
| ||||||||||||
Sbjct 627 AAGAATGGTTGATC 640
> Ahg926363 jgi|Araly1|926363|scaffold_201924.1
Length=492
Score = 243 bits (131), Expect = 3e-63
Identities = 368/475 (77%), Gaps = 45/475 (9%)
Strand=Plus/Plus
Query 669 CAAATCAGTGGTAATGAGCTTCAACGTGAATTCTGAAGATTTTAGTGTCATTGAGTTG-- 726
|||||| ||||||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 8 CAAATCTGTGGTAATGAGTTTCAAAGTGAGTTCTGAAGATTTTAGTGTCATTGAGTTGCC 67
Query 727 ----GAAGTCGAAATTAG-TCCTTATT---GGAGATT-GGTGAATTACAAGGGGGATATT 777
|||||| || || | | | ||| ||| ||| |||||||||||| ||||||||
Sbjct 68 TAACGAAGTC-AACTTTGATTATAATTACTGGA-ATTTGGTGAATTACAAAAGGGATATT 125
Query 778 GCCCTAATG-A--A---CAACATTGAGGATAG-CTTGTATCACAGTCGAGAATTTGAAAT 830
||| || || | | |||| |||| || | || | || || | ||| ||| ||||
Sbjct 126 GCCTTAGTGGATGAGGGCAACTTTGAC-ATTGACTCGAATGGCAATGGAGTTTTTAAAAT 184
Query 831 GTGGGTTAGGAACGAGGTTACTGGAAATTGGGACAGAACTAGCATTAAGATTTCTCATTG 890
| ||||||||| || ||| ||||||||||||| |||| ||||| ||||| ||| |||
Sbjct 185 TTTGGTTAGGAAGGAAGTTGCTGGAAATTGGGAGAGAAAGCGCATTGAGATTCCTCGTTG 244
Query 891 GAATGGAACTGTTGATGGTAA-GACG-TT-TTATTTCAAAGGTACTATTGGAACAAAAGA 947
||| | ||| |||||| || || | || |||||| |||||||| ||||||||| |||
Sbjct 245 GAAAGAAACGGTTGAT---AACGAGGATTATTATTTTAAAGGTACCATTGGAACAGGAGA 301
Query 948 ACTT---GCTTTCGCACCAGACTATTGGTT-T-GG---GGAACAACATTTTGTGTCGTAT 999
|||| | |||||||||| ||| |||| | || || | || | | || | ||||
Sbjct 302 ACTTCTTGTTTTCGCACCA-ACTCGTGGTACTCGGTTCGGGAGAAGAGT--GT-T-GTAT 356
Query 1000 TACGAT-ACAGAAACAAAGAACCTCAGAAGATTTGATATTGAAG--G-AATGGTTGATCA 1055
|||||| | || ||| |||||||||||||||||||||||||| | |||| ||||| |
Sbjct 357 TACGATGA-AGCCACAGGGAACCTCAGAAGATTTGATATTGAAGAAGGAATGATTGATGA 415
Query 1056 AGATGATTTTGTTCGAACCTTCTTTGATCATGTTGATAGTACTTGGCTTATATGA 1110
|||| ||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 416 AGATCATTTTGTTCGAACCTTCTTCGATCATGTTGATAGTACTTGGCTTATGTGA 470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41363364945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5