BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70970.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926435 jgi|Araly1|926435|scaffold_201996.1 335 5e-91
> Ahg926435 jgi|Araly1|926435|scaffold_201996.1
Length=1280
Score = 335 bits (181), Expect = 5e-91
Identities = 827/1123 (74%), Gaps = 107/1123 (10%)
Strand=Plus/Plus
Query 1 ATGGAGAATTCAAGTTCCGAAACACTTCATGTTGAAGATTTACAAACGGAGATAATGTCA 60
|||| |||||||| |||| |||| | | | ||||||| || ||| | |||| | | |
Sbjct 22 ATGGTGAATTCAAATTCCCAAAC-C--CCTCCTGAAGATCTAGAAAAGAAGATTCTTTTA 78
Query 61 TGGCTGCCTCTGAAAAGCTTGTTGAGATTCGT-CATCGTCTCAAAGAAATGGGCATCTAT 119
|| ||||||||||| |||| ||| | || | || |||||||||||||||||||||||
Sbjct 79 CGGTTGCCTCTGAAATCCTTGGTGAAACTCATCCA-AGTCTCAAAGAAATGGGCATCTAT 137
Query 120 TATCCGTGGAGAACAATTCAAA-GCTCTTTACTTGCGTC-GATCGATGACAAGGCCTCG- 176
||||||||| ||| |||||| | | | ||||||| || |||| |||||||| |||||
Sbjct 138 TATCCGTGGGGAAGAATTCAGACG-TGAGTACTTGC-TCCGATCAATGACAAGACCTCGA 195
Query 177 GCTGATGTTCATGGTCCGA-CGAATTG-CAACCCTACCACCCGAACCTGAGATGGT-GTG 233
| ||||| | ||||| || ||||| | || |||| |||| ||||||| ||||| | |||
Sbjct 196 G-TGATGCTAATGGTG-GAACGAAT-GACATCCCTCCCACACGAACCTAAGATG-TCGTG 251
Query 234 GTTTCA-G-TCTTTTTGTAAAGAGGAAAGATGTATTCCC-GGC-CAACTCGAAGT-TGAG 288
|||||| | | ||| || || ||| ||||| ||| ||| ||| || |||| | ||||
Sbjct 252 GTTTCACGATGTTTATG-AA-GAGCAAAGACGTAA-CCCTGGCTCAGG-CGAA-TATGAG 306
Query 289 TTCTTGTTTCACTCTGTTTATCAAGAAAAGATACCGTATTTTTCATCTGGTCAACAGCAG 348
| ||||||||||||||||||||||| |||| ||| | ||| || ||||||||||| |||
Sbjct 307 GTGTTGTTTCACTCTGTTTATCAAGAGAAGAAACCATCTTTGTCCTCTGGTCAACAACAG 366
Query 349 TTGCGTGTTCCTCCTAATACAAA-CTATACGTC-TGTTTCTCAACCCAT-CGGAGGTTTG 405
|| ||| ||||| | | | || | | | | | |||||||||| || || |||||||
Sbjct 367 TTACGTATTCCTTTTGAGA-AAGTCGGTTC-TAATATTTCTCAACCTATACG-AGGTTTG 423
Query 406 ATC-TGTCTTCAGTCAGAAACTAAGTTTGCGCTTTGCAATCCGGGTACGAAAAAGTCTCG 464
| | |||||||| | ||| |||||| ||||| |||||||||| ||||| ||||| | |||
Sbjct 424 A-CATGTCTTCATTTAGATACTAAGGTTGCGATTTGCAATCCCGGTACCAAAAATTATCG 482
Query 465 GGCTTTACCTGATATCCAAGCACATGAA-A--AAGC-T--------T-TT--ATAACAA- 508
|||||| || |||| ||||| |||| | ||| | | || |||| ||
Sbjct 483 TATTTTACCGGAGATCCCAGCACTTGAAGATGAAGAGTGGCGCGAATCTTCCATAA-AAT 541
Query 509 GTTTTTTAGGATACGATGAAGCTACGAACGTATTCAAGGTGTTATGT-TTGACGATGGTA 567
||||||| ||||||||||||| |||||| |||||||||||||| ||| || | || | |
Sbjct 542 GTTTTTTTGGATACGATGAAGATACGAATGTATTCAAGGTGTTGTGTATTAA-GACG--A 598
Query 568 TGGGCCCATGAACCATCAAAACGAGTTTATGAGTATCAAGTCTTGACGGTGGAATCCGGT 627
|| || || || || | || | || | || | ||| |||||||||||||||| |||
Sbjct 599 -GGAACC-TGT-CC-TCTATACCAATTAACGATTGTCATGTCTTGACGGTGGAATTGGGT 654
Query 628 GTAGAGTCTTGTTCTTGGAGAGGGATCACATGTAAGGAGAAGGATCACACACCAGAAACT 687
| ||| ||| || ||||||| |||||| |||||| || | |||| |||||| |||
Sbjct 655 GCAGAACCTTCTTATTGGAGACGGATCATATGTAATGAT--G-ATCATTCACCAGTTACT 711
Query 688 CAAGGACTATGTAAAGGAGGGGTT-TTGTACTATGGAGCTCGGTCCACTAGTGACCATCG 746
||| ||||| ||||||||| || ||||||||||||||| |||| | || || | | |
Sbjct 712 GAAGCACTATTTAAAGGAGGT-TTCTTGTACTATGGAGCTTGGTCTAGTACTGGCAA-CA 769
Query 747 ACCTCTGGTAATGAGCTTTAATGTGAGGTCTCAAGAGTTTACCGCCATTG--AACT-TCC 803
| | ||||| |||| || || |||| |||| |||||||||||| ||| ||| ||
Sbjct 770 AT-T-TGGTAGTGAGGTTCAACGTGACGTCTGAAGAGTTTACCGT--TTGGGAACCGTC- 824
Query 804 TGA-----T-CAAC-T-A--CAT-ATT--AGTTATTT----TTGGAATTTTGTGATTTAC 846
||| | |||| | | | | ||| |||| || |||||| || |||||||||
Sbjct 825 TGAAGAGGTTCAACGTGATGC-TGATTTCAGTT-TTCCACGTTGGAAATTCGTGATTTAC 882
Query 847 AATGGG-GATATTGCCTTAGT-GAACGAATCTGACTTTGA-CCCTAGA-GTTGTGAATGA 902
| | || |||||| |||| || || | || |||| |||| | | || || |||
Sbjct 883 GA-GAAAGACATTGCCCTAGTAGAT-GACTTTG-CTTTTTTCCCT-GCTGCTGAGATTGA 938
Query 903 ACCGAATGGGAATAAAGTTTTTCAC-ATATGGGTTAGGGATGCAACTGCACAAGAATG-G 960
| | |||||| ||| ||||| | | |||| ||||| |||| || | || ||| | |
Sbjct 939 TCGGGATGGGACTAACGTTTTCC-CTATATTGGTTATAGATGAAATTTCAGGAGACTTTG 997
Query 961 CAGAGAACCCGCATCGAGATTCCTCGTTGGGAACAAAATGTTGGACATG-TGGACTATGT 1019
|||||| |||| |||||| | ||||| ||||||| |||||| ||| || | | | |
Sbjct 998 -AGAGAAAAATCATCAAGATTCATGGTTGGCAACAAAAAGTTGGAGATGATGTATTTTAT 1056
Query 1020 TTTCAGAGGTACCACTGGAACAAAAGAACTTGTTTTCGCCCAA 1062
|| || |||||||| ||||||| ||||||||||||||| |||
Sbjct 1057 TT-CAAAGGTACCATTGGAACAGGAGAACTTGTTTTCGCACAA 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5