BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G70970.1 Length=1209 Score E Sequences producing significant alignments: (Bits) Value Ahg926435 jgi|Araly1|926435|scaffold_201996.1 335 5e-91 > Ahg926435 jgi|Araly1|926435|scaffold_201996.1 Length=1280 Score = 335 bits (181), Expect = 5e-91 Identities = 827/1123 (74%), Gaps = 107/1123 (10%) Strand=Plus/Plus Query 1 ATGGAGAATTCAAGTTCCGAAACACTTCATGTTGAAGATTTACAAACGGAGATAATGTCA 60 |||| |||||||| |||| |||| | | | ||||||| || ||| | |||| | | | Sbjct 22 ATGGTGAATTCAAATTCCCAAAC-C--CCTCCTGAAGATCTAGAAAAGAAGATTCTTTTA 78 Query 61 TGGCTGCCTCTGAAAAGCTTGTTGAGATTCGT-CATCGTCTCAAAGAAATGGGCATCTAT 119 || ||||||||||| |||| ||| | || | || ||||||||||||||||||||||| Sbjct 79 CGGTTGCCTCTGAAATCCTTGGTGAAACTCATCCA-AGTCTCAAAGAAATGGGCATCTAT 137 Query 120 TATCCGTGGAGAACAATTCAAA-GCTCTTTACTTGCGTC-GATCGATGACAAGGCCTCG- 176 ||||||||| ||| |||||| | | | ||||||| || |||| |||||||| ||||| Sbjct 138 TATCCGTGGGGAAGAATTCAGACG-TGAGTACTTGC-TCCGATCAATGACAAGACCTCGA 195 Query 177 GCTGATGTTCATGGTCCGA-CGAATTG-CAACCCTACCACCCGAACCTGAGATGGT-GTG 233 | ||||| | ||||| || ||||| | || |||| |||| ||||||| ||||| | ||| Sbjct 196 G-TGATGCTAATGGTG-GAACGAAT-GACATCCCTCCCACACGAACCTAAGATG-TCGTG 251 Query 234 GTTTCA-G-TCTTTTTGTAAAGAGGAAAGATGTATTCCC-GGC-CAACTCGAAGT-TGAG 288 |||||| | | ||| || || ||| ||||| ||| ||| ||| || |||| | |||| Sbjct 252 GTTTCACGATGTTTATG-AA-GAGCAAAGACGTAA-CCCTGGCTCAGG-CGAA-TATGAG 306 Query 289 TTCTTGTTTCACTCTGTTTATCAAGAAAAGATACCGTATTTTTCATCTGGTCAACAGCAG 348 | ||||||||||||||||||||||| |||| ||| | ||| || ||||||||||| ||| Sbjct 307 GTGTTGTTTCACTCTGTTTATCAAGAGAAGAAACCATCTTTGTCCTCTGGTCAACAACAG 366 Query 349 TTGCGTGTTCCTCCTAATACAAA-CTATACGTC-TGTTTCTCAACCCAT-CGGAGGTTTG 405 || ||| ||||| | | | || | | | | | |||||||||| || || ||||||| Sbjct 367 TTACGTATTCCTTTTGAGA-AAGTCGGTTC-TAATATTTCTCAACCTATACG-AGGTTTG 423 Query 406 ATC-TGTCTTCAGTCAGAAACTAAGTTTGCGCTTTGCAATCCGGGTACGAAAAAGTCTCG 464 | | |||||||| | ||| |||||| ||||| |||||||||| ||||| ||||| | ||| Sbjct 424 A-CATGTCTTCATTTAGATACTAAGGTTGCGATTTGCAATCCCGGTACCAAAAATTATCG 482 Query 465 GGCTTTACCTGATATCCAAGCACATGAA-A--AAGC-T--------T-TT--ATAACAA- 508 |||||| || |||| ||||| |||| | ||| | | || |||| || Sbjct 483 TATTTTACCGGAGATCCCAGCACTTGAAGATGAAGAGTGGCGCGAATCTTCCATAA-AAT 541 Query 509 GTTTTTTAGGATACGATGAAGCTACGAACGTATTCAAGGTGTTATGT-TTGACGATGGTA 567 ||||||| ||||||||||||| |||||| |||||||||||||| ||| || | || | | Sbjct 542 GTTTTTTTGGATACGATGAAGATACGAATGTATTCAAGGTGTTGTGTATTAA-GACG--A 598 Query 568 TGGGCCCATGAACCATCAAAACGAGTTTATGAGTATCAAGTCTTGACGGTGGAATCCGGT 627 || || || || || | || | || | || | ||| |||||||||||||||| ||| Sbjct 599 -GGAACC-TGT-CC-TCTATACCAATTAACGATTGTCATGTCTTGACGGTGGAATTGGGT 654 Query 628 GTAGAGTCTTGTTCTTGGAGAGGGATCACATGTAAGGAGAAGGATCACACACCAGAAACT 687 | ||| ||| || ||||||| |||||| |||||| || | |||| |||||| ||| Sbjct 655 GCAGAACCTTCTTATTGGAGACGGATCATATGTAATGAT--G-ATCATTCACCAGTTACT 711 Query 688 CAAGGACTATGTAAAGGAGGGGTT-TTGTACTATGGAGCTCGGTCCACTAGTGACCATCG 746 ||| ||||| ||||||||| || ||||||||||||||| |||| | || || | | | Sbjct 712 GAAGCACTATTTAAAGGAGGT-TTCTTGTACTATGGAGCTTGGTCTAGTACTGGCAA-CA 769 Query 747 ACCTCTGGTAATGAGCTTTAATGTGAGGTCTCAAGAGTTTACCGCCATTG--AACT-TCC 803 | | ||||| |||| || || |||| |||| |||||||||||| ||| ||| || Sbjct 770 AT-T-TGGTAGTGAGGTTCAACGTGACGTCTGAAGAGTTTACCGT--TTGGGAACCGTC- 824 Query 804 TGA-----T-CAAC-T-A--CAT-ATT--AGTTATTT----TTGGAATTTTGTGATTTAC 846 ||| | |||| | | | | ||| |||| || |||||| || ||||||||| Sbjct 825 TGAAGAGGTTCAACGTGATGC-TGATTTCAGTT-TTCCACGTTGGAAATTCGTGATTTAC 882 Query 847 AATGGG-GATATTGCCTTAGT-GAACGAATCTGACTTTGA-CCCTAGA-GTTGTGAATGA 902 | | || |||||| |||| || || | || |||| |||| | | || || ||| Sbjct 883 GA-GAAAGACATTGCCCTAGTAGAT-GACTTTG-CTTTTTTCCCT-GCTGCTGAGATTGA 938 Query 903 ACCGAATGGGAATAAAGTTTTTCAC-ATATGGGTTAGGGATGCAACTGCACAAGAATG-G 960 | | |||||| ||| ||||| | | |||| ||||| |||| || | || ||| | | Sbjct 939 TCGGGATGGGACTAACGTTTTCC-CTATATTGGTTATAGATGAAATTTCAGGAGACTTTG 997 Query 961 CAGAGAACCCGCATCGAGATTCCTCGTTGGGAACAAAATGTTGGACATG-TGGACTATGT 1019 |||||| |||| |||||| | ||||| ||||||| |||||| ||| || | | | | Sbjct 998 -AGAGAAAAATCATCAAGATTCATGGTTGGCAACAAAAAGTTGGAGATGATGTATTTTAT 1056 Query 1020 TTTCAGAGGTACCACTGGAACAAAAGAACTTGTTTTCGCCCAA 1062 || || |||||||| ||||||| ||||||||||||||| ||| Sbjct 1057 TT-CAAAGGTACCATTGGAACAGGAGAACTTGTTTTCGCACAA 1098 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45137533728 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5