BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70980.1
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495758 jgi|Araly1|495758|fgenesh2_kg.8__1574__AT5G56680.1 2170 0.0
Ahg497343 jgi|Araly1|497343|fgenesh2_kg.239__1__AT1G70980.1 1290 0.0
Ahg926483 jgi|Araly1|926483|scaffold_202044.1 1240 0.0
Ahg894470 jgi|Araly1|894470|Al_scaffold_0006_2466 822 0.0
Ahg926121 jgi|Araly1|926121|scaffold_201682.1 479 4e-134
> Ahg495758 jgi|Araly1|495758|fgenesh2_kg.8__1574__AT5G56680.1
Length=1925
Score = 2170 bits (1175), Expect = 0.0
Identities = 1564/1747 (90%), Gaps = 45/1747 (3%)
Strand=Plus/Plus
Query 1 ATGGGTGATGAGATTGTGCCTCCGGCGAATCAGTTAGCCGCCGATA-ACTTGGAAAACGA 59
|||| ||||||||||||||||||||||||||| |||||||| | || ||||| |||||
Sbjct 29 ATGGCTGATGAGATTGTGCCTCCGGCGAATCAATTAGCCGCAG-TATCCTTGGGTAACGA 87
Query 60 TGGATCTACGGTGCAGAAAGCGCAATTTTCAG-ACAGGGTTCTGATTCGATCGATTTT-G 117
|||||||||||||| ||||| |||||||| | || ||||| |||||||| | ||||| |
Sbjct 88 CGGATCTACGGTGCAAAAAGCTCAATTTTC-GAACCGGGTTTTGATTCGAACCATTTTGG 146
Query 118 ---G----G-CGGCGGAGCTAAACTCGCCGGTCA-AAAGGTTAGAATCGGTGGTTGGGTT 168
| | |||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct 147 ATCGACCTGACGGCGGAGCTAAACTCGCCGGTCAGAAA-ATTCGAATCGGTGGTTGGGTT 205
Query 169 AAAACCGGAAGACAGCAAGGGAAAGGGA-CTTTTGCTTTCCTTGAGGTTAACGATGGGTC 227
|||||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||| ||
Sbjct 206 AAAACCGGAAGAGAGCAAGGGAAA-GGAGCTTTCGCTTTCCTTGAGGTTAACGATGGATC 264
Query 228 TTGTCCAGCGAATCTCCAGGTTATGGTTGATTCATCTCTT-TATGATCTCTCTAGGTTGG 286
||||||||||||||| ||||||||||| ||||| ||| || ||||||||||||| |||||
Sbjct 265 TTGTCCAGCGAATCTTCAGGTTATGGTGGATTCGTCT-TTATATGATCTCTCTAAGTTGG 323
Query 287 TTGCGACTGGAACTTGTGTTACTGTTGATGGAGTTTTGAAGATTCCTCCGGAAGGTAAAG 346
||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 324 TTGCGACGGGAACTTGTGTTACTGTTGATGGAGTTTTGAAGGTTCCACCGGAAGGTAAAG 383
Query 347 GTTTGAAGCAGAGTATTGAGCTTAGCGTTGAG-ACGGTGATTGCGGTGGGAACTGTTGAT 405
|| ||||||||| |||||||||||||||| | || ||||||| || |||||||| |||
Sbjct 384 GTACGAAGCAGAGGATTGAGCTTAGCGTTGTGAAC-GTGATTGATGTTGGAACTGTGGAT 442
Query 406 CCGACTACGTATCCGCTTCCTAAGACTAAGTTGACTCCTGAGTTTCTCAGAGATGTGCTT 465
|||||| |||||| |||||||||||||||||||||| ||||||| | ||||||||||||
Sbjct 443 GCGACTAAGTATCCACTTCCTAAGACTAAGTTGACTCTTGAGTTTTTGAGAGATGTGCTT 502
Query 466 CATCTTCGTTCTAGGACTAACTTGATCTCAGCAGTTGCAAGAATCCGTAACGCGCTTGCT 525
|||||||| || |||||||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct 503 CATCTTCGATCCAGGACTAACTCAATCTCTGCAGTTGCCAGAATCCGTAATGCGCTTGCT 562
Query 526 TTTGCGACGCATAGtttttttCAAGAACATAGTTTCCTTTACATTCACACTCCTATCATC 585
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TTTGCGACCCATAGTTTCTTTCAAGAACATAGTTTCCTTTACATTCACACTCCTATCATT 622
Query 586 ACAACAAGTGATTGTGAAGGTGCTGGTGAAATGTTCCAAGTGACAACCTTGATCAATCAC 645
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 623 ACAACAAGTGATTGTGAAGGTGCTGGTGAAATGTTCCAAGCAACAACCTTGATCAATTAC 682
Query 646 ACTGAGAGGGTT-GAGCAGGATCTCATTGATAACCCTCCACCAACTGAGGCTGACGTTGA 704
||||||| ||| ||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 683 ACTGAGA-AGTTGGAGCAGGATCTCATTGATAACCCTCTGCCTACTGAGGCTGATGTCGA 741
Query 705 AGCGGCCAGGCTTATTGTCAAGGAGAGAGGTGAAGCTGTTGCGCAACTTAAAGTTGCCAA 764
||| || ||||| ||||| |||||||||||||| | ||| |||||||| |||| ||||||
Sbjct 742 AGCTGCGAGGCTCATTGTTAAGGAGAGAGGTGATGTTGTAGCGCAACTGAAAGCTGCCAA 801
Query 765 GGCGAGCAAGGAAGAGATCACTGCTTCCGTTGCTCAAC-TAAGTGTAGCAAAGGCGAGTT 823
|| ||||||||||||||||||||| | |||||||||| ||| ||||||||| |||||
Sbjct 802 AGCAAGCAAGGAAGAGATCACTGCTGCTGTTGCTCAACTTAA-AATAGCAAAGGAGAGTT 860
Query 824 TAGCTCATGTTGAAGAGAGGTTAAGGCTTAAGCCTGGACTACCTAAGAATGATGGTAAA- 882
| |||||| |||||||||||| || ||||||||||||||||||||| || ||||| |||
Sbjct 861 TTGCTCATATTGAAGAGAGGTCAAAGCTTAAGCCTGGACTACCTAAAAAAGATGG-AAAC 919
Query 883 ATTGATTATTCCAATGATTTCTTTGGCCGTCAAGCTTTCTTGACAGTTTCTGGTCAGTTA 942
|||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||
Sbjct 920 ATTGATTATTCCAAGGATTTCTTTGGCCGTCAAGCTTTCTTGACAGTTTCGGGGCAATTA 979
Query 943 CAAGTGGAGACCTATGCTTGCGCTCTTAGCAGCGTGTATACATTTGGTCCC-ACTTTTCG 1001
||||||||||| |||||||| ||||||||||| ||||||||||| || ||| ||||| ||
Sbjct 980 CAAGTGGAGACGTATGCTTGTGCTCTTAGCAGTGTGTATACATTCGG-CCCGACTTTCCG 1038
Query 1002 GGCAGAGAACTCTCACACTTCAAGGCATTTAGCTGAGTTCTGGATGGTTGAGCCTGAAAT 1061
|||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1039 GGCAGAGAACTCGCACACTTCAAGGCATCTAGCTGAATTCTGGATGGTTGAGCCTGAAAT 1098
Query 1062 TGCTTTTGCAGATATACATGACGACATGAACTGTGCAGAGGCGTATGTGAAATACATGTG 1121
||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TGCTTTTGCAGATCTAGAGGACGACATGAACTGTGCAGAGGCGTATGTGAAATACATGTG 1158
Query 1122 CAAATGGTTGATGGATAAATGTGGCGATGACATGGAACTTATGGATAAGAACGTCGAC-G 1180
||| |||||| ||||||||||| ||||||||||||||||||||| |||||| |||||
Sbjct 1159 CAAGTGGTTGCTGGATAAATGTCGCGATGACATGGAACTTATGGCTAAGAATTTCGACTC 1218
Query 1181 AGGGATGCACTAAAAGGCTA-AACATGGTTGCCAAAGC--CT-CGTTTAAGCGTGTAACA 1236
| ||||||| | | |||||| || |||||| || | || ||||| |||| |||||
Sbjct 1219 A-GGATGCATTGACAGGCTAGAA-TTGGTTG---AATCAACTCCGTTTGGGCGTATAACA 1273
Query 1237 TACACTGAAGCAATAGAGCGACTTGAGAAAGCTGTAGCTCAAGGAAAGGTTGTTTTTGAT 1296
||||||||||||||||||| ||||||| ||||||| ||| ||||||| | | ||||||
Sbjct 1274 TACACTGAAGCAATAGAGCTACTTGAGGAAGCTGTGGCTAAAGGAAA-G--GAATTTGAT 1330
Query 1297 AACAAAGTGGAGTGGGGAATCGACTTGGCCTCAGAGCATGAAAGATACTTGACAGAGGTT 1356
|||||||| ||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 1331 AACAAAGTTGAGTGGGGAATCGACTTAGCTTCGGAGCATGAAAGATACTTGACAGAGGTT 1390
Query 1357 GAGTTTGATCAAAAGCCAATAATTGTGTATAACTACCCGAAAGGAATCAAAGCTTTTTAC 1416
| || |||||||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 1391 TTG-TT--TCAAAAGCCACTTATTGTCTATAACTACCCGAAAGGAATCAAAGCTTTTTAC 1447
Query 1417 ATGAGACTTAACGATGATGAGAAGACAGTTGCTGCCATGGATGTCCTTGTTCCAAAGGTT 1476
|||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 1448 ATGAGACTTAACGACGATGAGAAGACTGTTGCAGCCATGGATGTCCTCGTTCCAAAGGTT 1507
Query 1477 GGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGATATGATGTTATCAAACAGAGGATC 1536
|||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 1508 GGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGATATGATGTCATAAAAAAGAGGATT 1567
Query 1537 GAGGAGATGGGTCTACCAATGGAGCCATATGAGTGGTACCTAGACTTGCGTCGTTATGGA 1596
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1568 GAGGAGATGGGTCTACCAATAGAGCCATATGAGTGGTACCTAGACTTGCGCCGATATGGA 1627
Query 1597 ACAGTGAAGCATTGTGGATTTGGACTTGGCTTCGAACGTATGATTCAGTTCGCTACAGGA 1656
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1628 ACAGTGAAGCATTGTGGATTTGGACTTGGCTTCGAACGTATGATTCTGTTCGCTACAGGA 1687
Query 1657 ATTGATAACATCAGAGATGTTATTCCTTTCCCTCGCTATCCTGGAAAAGCTGATCTCTGA 1716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1688 ATTGATAACATCAGAGATGTTATTCCTTTCCCTCGCTATCCTGGAAAAGCTGATCTTTGA 1747
Query 1717 TTCCTCT 1723
|||||||
Sbjct 1748 TTCCTCT 1754
> Ahg497343 jgi|Araly1|497343|fgenesh2_kg.239__1__AT1G70980.1
Length=1341
Score = 1290 bits (698), Expect = 0.0
Identities = 821/881 (93%), Gaps = 6/881 (1%)
Strand=Plus/Plus
Query 71 TGCAGAAAGCGCAATTTTCAGACAGGGTTCTGATTCGATCGATTTTGGGCGGCGGAGCTA 130
|||||||||||||||| || ||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 2 TGCAGAAAGCGCAATTCTCCGACCGGGTTTTGATTCGATCGATTTTGAGCGGCGGAGCTA 61
Query 131 AACTCGCCGGTCAAAAGGTTAGAATCGGTGGTTGGGTTAAAACCGGAAGACAGCAAGGGA 190
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 62 AACTTGCCGGTCAAAAGGTTAGAATCGGCGGTTGGGTTAAAACCGGAAGACAACAAGGGA 121
Query 191 AAGGGACTTTTGCTTTCCTTGAGGTTAACGATGGGTCTTGTCCAGCGAATCTCCAGGTTA 250
|||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 122 AAGGGAAATTTGCTTTCCTTGAGGTTAACGATGGATCTTGTCCAGCGAATCTTCAGGTTA 181
Query 251 TGGTTGATTCATCTCTTTATGATCTCTCTAGGTTGGTTGCGACTGGAACTTGTGTTACTG 310
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 182 TGGTTGATTCTTCTCTTTATGATCTCTCTAGGTTAGTTGCGACGGGAACTTGTGTTACTG 241
Query 311 TTGATGGAGTTTTGAAGATTCCTCCGGAAGGTAAAGGTTTGAAGCAGAGTATTGAGCTTA 370
||||||||||||||||| |||| || ||||||||||||||||| |||||||| |||||||
Sbjct 242 TTGATGGAGTTTTGAAGGTTCCACCTGAAGGTAAAGGTTTGAAACAGAGTATCGAGCTTA 301
Query 371 GCGTTGAGACG-GTGATTGCGGTGGGAACTGTTGATCCGACTACGTATCCGCTTCCTAAG 429
|||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 302 ACGTTGAGA-GTGTGATTGATGTGGGAACTGTTGATCCGACTAAGTATCCGCTTCCTAAG 360
Query 430 ACTAAGTTGACTCCTGAGTTTCTCAGAGATGTGCTTCATCTTCGTTCTAGGACTAACTTG 489
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 361 ACTAAGTTGACTCCTGAGTTTCTCAGAGATTTGCTTCATCTTCGTTCCAGGACTAACTTG 420
Query 490 ATCTCAGCAGTTGCAAGAATCCGTAACGCGCTTGCTTTTGCGACGCATAGtttttttCAA 549
||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 421 ATCTCAGCAGTGGCAAGAATCCGTAATGCGCTTGCTTTTGCGACCCACAGTTTTTTTCAA 480
Query 550 GAACATAGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTGATTGTGAAGGTGCT 609
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GAACATGGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTGATTGTGAAGGAGCT 540
Query 610 GGTGAAATGTTCCAAGTGACAACCTTGATCAATCACACTGAGAGGGTTGAGCAGGATCTC 669
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGTGAAATGTTCCAAGTAACAACCTTGATCAATCACACTGAGAGGGTTGAGCAGGATCTC 600
Query 670 ATTGATAACCCTCCACCAACTGAGGCTGACGTTGAAGCGGCCAGGCTTATTGTCAAGGAG 729
||||||||||||||||| ||||||||||| |||||||||| || |||||||||||||||
Sbjct 601 ATTGATAACCCTCCACCCACTGAGGCTGATGTTGAAGCGGAGAGACTTATTGTCAAGGAG 660
Query 730 AGAGGTGAAGCTGT-TGCGCAACTTAAAGTTGCCAAGGCGAGCAAGGAAGAGATCACTGC 788
|||||||||||||| | ||| ||| |||| ||||||||| ||||||||||||||||||||
Sbjct 661 AGAGGTGAAGCTGTGT-CGCGACTGAAAGCTGCCAAGGCAAGCAAGGAAGAGATCACTGC 719
Query 789 TTCCGTTGCTCAACTAAGTGTAGCAAAGGCGAGTTTAGCTCATGTTGAAGAGAGGTTAAG 848
||||||||||||||| | | ||||||||||| |||||||||||||||||||||||| |||
Sbjct 720 TTCCGTTGCTCAACTTACTATAGCAAAGGCGTGTTTAGCTCATGTTGAAGAGAGGTCAAG 779
Query 849 GCTTAAGCCTGGACTACCTAAGAATGATGGTAAAATTGATTATTCCAATGATTTCTTTGG 908
||||||||||||| ||||||| || ||||| |||||||||||||| |||||||||||||
Sbjct 780 GCTTAAGCCTGGATTACCTAAAAAAGATGGAAAAATTGATTATTCGGATGATTTCTTTGG 839
Query 909 CCGTCAAGCTTTCTTGACAGTTTCTGGTCAGTTACAA-GTG 948
|||||||||||||||||| ||| |||||||||||||| |||
Sbjct 840 CCGTCAAGCTTTCTTGACGGTT-CTGGTCAGTTACAACGTG 879
Score = 673 bits (364), Expect = 0.0
Identities = 438/473 (93%), Gaps = 7/473 (1%)
Strand=Plus/Plus
Query 968 TTAGCAGCGTGTATACATTTGGTCCC-ACTTTTCGGGCAGAGAACTCTCACACTTCAAGG 1026
||| || ||||||||||||||| ||| ||||| || ||||||||||||||||||||||||
Sbjct 870 TTA-CAACGTGTATACATTTGG-CCCGACTTTCCGAGCAGAGAACTCTCACACTTCAAGG 927
Query 1027 CATTTAGCTGAGTTCTGGATGGTTGAGCCTGAAATTGCTTTTGCAGATATACATGACGAC 1086
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 928 CATTTAGCTGAATTCTGGATGGTTGAGCCTGAAATAGCTTTTGCAGATATACATGACGAC 987
Query 1087 ATGAACTGTGCAGAGGCGTATGTGAAATACATGTGCAAATGGTTGATGGATAAATGTGGC 1146
|||||||||||||||||||||||||||||||||||||| |||||||| | || ||| |
Sbjct 988 ATGAACTGTGCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGATCAAGAATTGTTCC 1047
Query 1147 GATGACATGGAACTTATGGATAAGAACGTCGACGAGGGATGCACTAAAAGGCTAAACATG 1206
||||||||||| ||||||||||||| || || | ||||||||| ||||||||||| |||
Sbjct 1048 GATGACATGGATTTTATGGATAAGAATGTTGATGGGGGATGCACGAAAAGGCTAAAAATG 1107
Query 1207 GTTGCC-AAAGCCTCGTTTAAGCGTGTAACATACACTGAAGCAATAGAGCG-ACTTGAGA 1264
|||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1108 GTTGCCGAAA-CCTCGTTTAAGCGTGTAACATACACTGAAGCAATAGAG-GTACTTGAGA 1165
Query 1265 AAGCTGTAGCTCAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGTGGGGAATCGACTTGG 1324
||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 1166 AAGCTGTAGCTGAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGAGGAAAATGGACTTGG 1225
Query 1325 CCTCAGAGCATGAAAGATACTTGACAGAGGTTGAGTTTGATCAAAAGCCAATAATTGTGT 1384
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1226 CCTCAGAGCATGAAAGATACTTGACAGAGGTTGAGTATGATCAAAAGCCAATAATTGTTT 1285
Query 1385 ATAACTACCCGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAG 1437
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1286 ATAACTACCCGAAAGAAATCAAAGCTTTTTACATGAGACTTAACGATGATGAG 1338
> Ahg926483 jgi|Araly1|926483|scaffold_202044.1
Length=1340
Score = 1240 bits (671), Expect = 0.0
Identities = 768/814 (94%), Gaps = 9/814 (1%)
Strand=Plus/Plus
Query 917 CTTTCTTGACAGTTTCTGGTCAGTTACAAGTGGAGACCTATGCTTGCGCTCTTAGCAGCG 976
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CTTTCTTGAC-GGTTCTGGTCAGTTACAAGTGGAGACCTATGCTTGCGCTCTTAGCAGCG 579
Query 977 TGTATACATTTGGTCCC-ACTTTTCGGGCAGAGAACTCTCACACTTCAAGGCATTTAGCT 1035
||||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 580 TGTATACATTTGG-CCCGACTTTCCGAGCAGAGAACTCTCACACTTCAAGGCATTTAGCT 638
Query 1036 GAGTTCTGGATGGTTGAGCCTGAAATTGCTTTTGCAGATATACATGACGACATGAACTGT 1095
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 639 GAATTCTGGATGGTTGAGCCTGAAATAGCTTTTGCAGATATACATGACGACATGAACTGT 698
Query 1096 GCAGAGGCGTATGTGAAATACATGTGCAAATGGTTGATGGATAAATGTGGCGATGACATG 1155
||||||||||||||||||||||||||||| |||||||| | || ||| ||||||||||
Sbjct 699 GCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGATCAAGAATTGTTCCGATGACATG 758
Query 1156 GAACTTATGGATAAGAACGTCGACGAGGGATGCACTAAAAGGCTAAACATGGTTGCC-AA 1214
|| ||||||||||||| || || | ||||||||| ||||||||||| ||||||||| ||
Sbjct 759 GATTTTATGGATAAGAATGTTGATGGGGGATGCACGAAAAGGCTAAAAATGGTTGCCGAA 818
Query 1215 AGCCTCGTTTAAGCGTGTAACATACACTGAAGCAATAGAGCG-ACTTGAGAAAGCTGTAG 1273
| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 819 A-CCTCGTTTAAGCGTGTAACATACACTGAAGCAATAGAG-GTACTTGAGAAAGCTGTAG 876
Query 1274 CTCAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGTGGGGAATCGACTTGGCCTCAGAGC 1333
|| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 877 CTGAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGAGGAAAATGGACTTGGCCTCAGAGC 936
Query 1334 ATGAAAGATACTTGACAGAGGTTGAGTTTGATCAAAAGCCAATAATTGTGTATAACTACC 1393
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 937 ATGAAAGATACTTGACAGAGGTTGAGTATGATCAAAAGCCAATAATTGTTTATAACTACC 996
Query 1394 CGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGCCA 1453
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 CGAAAGAAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGCCA 1056
Query 1454 TGGATGTCCTTGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGAT 1513
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1057 TGGATGTCCTCGTTCCAAAGGTGGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGAT 1116
Query 1514 ATGATGTTATCAAACAGAGGATCGAGGAGATGGGTCTACCAATGGAGCCATATGAGTGGT 1573
||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1117 ATGATGTCATCAGACAGAGGATCGAGGAGATGCGTCTACCAATAGAGCCATATGAGTGGT 1176
Query 1574 ACCTAGACTTGCGTCGTTATGGAACAGTGAAGCATTGTGGATTTGGACTTGGCTTCGAAC 1633
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1177 ACCTAGACTTGCGCCGATATGGAACAGTGAAGCATTGTGGGTTTGGACTTGGCTTCGAAC 1236
Query 1634 GTATGATTCAGTTCGCTACAGGAATTGATAACATCAGAGATGTTATTCCTTTCCCTCGCT 1693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GTATGATTCAGTTCGCTACAGGAATTGATAACATCAGAGATGTTATTCCTTTCCCTCGCT 1296
Query 1694 ATCCTGGAAAAGCTGATCTCTGATT-CCTC-TCT 1725
||||||||||||||||||||||||| |||| |||
Sbjct 1297 ATCCTGGAAAAGCTGATCTCTGATTTCCTCCTCT 1330
Score = 743 bits (402), Expect = 0.0
Identities = 468/500 (94%), Gaps = 4/500 (1%)
Strand=Plus/Plus
Query 357 GAGTATTGAGCTTAGCGTTGAGACG-GTGATTGCGGTGGGAACTGTTGATCCGACTACGT 415
|||||| ||||||| |||||||| | ||||||| |||||||||||||||||||||| ||
Sbjct 23 GAGTATCGAGCTTAACGTTGAGA-GTGTGATTGATGTGGGAACTGTTGATCCGACTAAGT 81
Query 416 ATCCGCTTCCTAAGACTAAGTTGACTCCTGAGTTTCTCAGAGATGTGCTTCATCTTCGTT 475
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 82 ATCCGCTTCCTAAGACTAAGTTGACTCCTGAGTTTCTCAGAGATTTGCTTCATCTTCGTT 141
Query 476 CTAGGACTAACTTGATCTCAGCAGTTGCAAGAATCCGTAACGCGCTTGCTTTTGCGACGC 535
| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 142 CCAGGACTAACTTGATCTCAGCAGTGGCAAGAATCCGTAATGCGCTTGCTTTTGCGACCC 201
Query 536 ATAGtttttttCAAGAACATAGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTG 595
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 202 ACAGTTTTTTTCAAGAACATGGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTG 261
Query 596 ATTGTGAAGGTGCTGGTGAAATGTTCCAAGTGACAACCTTGATCAATCACACTGAGAGGG 655
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 262 ATTGTGAAGGAGCTGGTGAAATGTTCCAAGTAACAACCTTGATCAATCACACTGAGAGGG 321
Query 656 TTGAGCAGGATCTCATTGATAACCCTCCACCAACTGAGGCTGACGTTGAAGCGGCCAGGC 715
||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || |
Sbjct 322 TTGAGCAGGATCTCATTGATAACCCTCCACCCACTGAGGCTGATGTTGAAGCGGAGAGAC 381
Query 716 TTATTGTCAAGGAGAGAGGTGAAGCTGT-TGCGCAACTTAAAGTTGCCAAGGCGAGCAAG 774
|||||||||||||||||||||||||||| | ||| ||| |||| ||||||||| ||||||
Sbjct 382 TTATTGTCAAGGAGAGAGGTGAAGCTGTGT-CGCGACTGAAAGCTGCCAAGGCAAGCAAG 440
Query 775 GAAGAGATCACTGCTTCCGTTGCTCAACTAAGTGTAGCAAAGGCGAGTTTAGCTCATGTT 834
||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||
Sbjct 441 GAAGAGATCACTGCTTCCGTTGCTCAACTTACTATAGCAAAGGCGTGTTTAGCTCATGTT 500
Query 835 GAAGAGAGGTTAAGGCTTAA 854
|||||||||| |||||||||
Sbjct 501 GAAGAGAGGTCAAGGCTTAA 520
> Ahg894470 jgi|Araly1|894470|Al_scaffold_0006_2466
Length=1287
Score = 822 bits (445), Expect = 0.0
Identities = 971/1214 (80%), Gaps = 79/1214 (7%)
Strand=Plus/Plus
Query 153 AATCGGTGGTTGGGTTAAAACCGGAAGACAGCAAGGGAAAGGGACTTTTGCTTTCCTTGA 212
|||| | || ||||||||||| ||||| ||||||| ||||||||||| ||||| |||||
Sbjct 102 AATCAGCGGGTGGGTTAAAACGGGAAGGGAGCAAGGAAAAGGGACTTTCGCTTTTCTTGA 161
Query 213 GGTTAACGATGGGTCTTGTC-CAGCGAATCTCCAGGTTATGGTTGATTCATCTCT-TTAT 270
||| |||||||| || || | |||||||||| ||||| | ||| ||| | | | | | |
Sbjct 162 GGTGAACGATGGATCCTG-CGCAGCGAATCTTCAGGTCAAGGTGGATGCTTGTGTGTCA- 219
Query 271 GATCTCTCTAGGTTGGTTGCGACTGGAACTTGTGTTACTGTTGATGGAGT-TTTGAAGAT 329
||| |||| | |||||||||||| ||||||||| | || ||||||||| | |||||||||
Sbjct 220 GATGTCTCCAAGTTGGTTGCGACGGGAACTTGTCTGACCGTTGATGGA-TGTTTGAAGAT 278
Query 330 TCCTCCGGAAGGTAAAGGTTTGAAGCAG-AGTATTGAGCTTAGCGTTGAGACGGTGATTG 388
||||||||||||||||| | ||||||| || ||||||||||||| |||| ||||||||
Sbjct 279 TCCTCCGGAAGGTAAAGCTACGAAGCAGAAG-ATTGAGCTTAGCGCCGAGAAGGTGATTG 337
Query 389 CGGTGGGAACTGTTGATCCGACTACGTATCCGCTTCCTAAGACTAAGTTGACTCCT-GAG 447
|||||||| || |||||| ||||||| ||| |||||||||| ||| ||||| || |||
Sbjct 338 ATGTGGGAACGGTGGATCCGGCTACGTACCCGATTCCTAAGACGAAGCTGACT-CTAGAG 396
Query 448 -TTTCTCAGAGA-TGTGCTTCATCTTCGTTCTAGGACTAACTTGATCTCAGCAGTTGCAA 505
|| | ||||| | | | | || ||||| | ||||| | | ||| |||||||| |||
Sbjct 397 CATT-TGAGAGACTATAC-TAATTTTCGTGCAAGGACCACCACGATGGCAGCAGTTACAA 454
Query 506 GAATCCGTAACG--CGCTTGCTTTTGCGACGCATAGtttt-tttCAAGAACATAG-TTTC 561
||||||| ||| | || || ||| | | || |||| | | | |||||| | | |
Sbjct 455 GAATCCG--ACGTAAGATTACTCTTGAGGCTCA-CCTTTTCTGTGATGAACAT-GATAT- 509
Query 562 CT-TTACATTCACACTCCTATCATCACAACAAGTGATTGTGAAGGTGCTGGTGAAATGTT 620
|| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 510 CTGTCACATTCACACTCCTATCATCACAACAAGTGATTGCGAAGGTGCTGGTGAAATGTT 569
Query 621 CCAAGTGACAACCTTGATCAATCACACTGAGAGGGTTGAGCAGGATCTCATTGATAACCC 680
|||||| |||||||||||||| || | | | || | | | | | | | | |
Sbjct 570 CCAAGTCACAACCTTGATCAACCA-A-TC------T-GA-C-G-A-CA-A--G-T--CGC 610
Query 681 TCCACCAACTGAGGCTGACGTTGAAGCGGCCAGGCTTATTGTCAAGGAGAGAGGTGAAGC 740
||||| ||||||||| ||||||| |||| ||| ||||||||||||| |||||||||
Sbjct 611 -CCACC----GAGGCTGACATTGAAGCTGCCAAGCTCATTGTCAAGGAGAAAGGTGAAGC 665
Query 741 TGTTGCGCAACTTAAAGTTGCCAAGGCGAGCAAGGAAGAGATCACTGCTTCCGTTGCTCA 800
||| |||||||| |||| |||||| || |||||| ||||||| || ||||||||||||||
Sbjct 666 TGTAGCGCAACTCAAAGCTGCCAAAGCAAGCAAGCAAGAGATTACGGCTTCCGTTGCTCA 725
Query 801 ACTAAGTGTAGCAAAGGCGAGTTTAGCTCATG-TTGAAGAGAGGTTAAGGCTTAAGCCTG 859
||| | || |||||||| || ||||||| ||| |||||||||||| ||||||||||||||
Sbjct 726 ACTCACTGAAGCAAAGGAGACTTTAGCT-ATGGTTGAAGAGAGGTCAAGGCTTAAGCCTG 784
Query 860 GACTACCTAAGAATGATGGTAAAATTGATTATTCC-AATGATTTCTTTGGC-CGTCAAGC 917
|| ||||||| || ||||| ||||||||||||||| || |||||||||| | ||||||||
Sbjct 785 GATTACCTAAAAAGGATGGAAAAATTGATTATTCCCAA-GATTTCTTTG-CTCGTCAAGC 842
Query 918 TTTCTTGACAGTTTCTGGTCAGTTACAAGTGGAGACCTATGCTTGC-GCTCTTAGC-AGC 975
|||| | |||||||||||||| ||||| | || |||||||||||| | | | | |
Sbjct 843 TTTCCTCACAGTTTCTGGTCAATTACACGCCGAAACCTATGCTTGCAG-TATGGGTGAT- 900
Query 976 GTGTATACATTTGGTCCCACTTTTCGGGCAGAGAACTCTCACACTTCAAGGCAT-TTAGC 1034
|||||||||||||| |||||||| ||||||||||| |||||||| ||||||||| || ||
Sbjct 901 GTGTATACATTTGGCCCCACTTTCCGGGCAGAGAAGTCTCACACCTCAAGGCATCTT-GC 959
Query 1035 TGAGTTCTGGATGGTTGAGCCTGAAATT-GCTTTTGCAGATATACATGACGAC-ATGAAC 1092
||||||||||||||||||| |||| || |||||||| | | || | || | | ||||||
Sbjct 960 TGAGTTCTGGATGGTTGAGGTTGAA-TTAGCTTTTGCCGGTGTAGAGGAGG-CTATGAAC 1017
Query 1093 TGTGCAGAGGCG-TATGTGAAATACATGTGCAAATGGTTGATGGATAAA-TGTGGCGATG 1150
|| |||||||| | ||||||| |||| ||||| | |||| | || ||| |||| ||||
Sbjct 1018 TGCGCAGAGGCACT-TGTGAAAGACATTTGCAATTCGTTGCTTGA-AAAGTGTGATGATG 1075
Query 1151 ACATGGAACTTATGGATAAGAACGTCGACGAGGGATGCACTAAAAGGCTAAACAT-GGTT 1209
||||| ||||||||| |||||| |||||| | | |||| | | |||||| || ||||
Sbjct 1076 ACATGAAACTTATGGCTAAGAATGTCGACAAAGCCTGCATTGACAGGCTACT-ATTGGTT 1134
Query 1210 GCCAAAGCCTCG-TTTAAG-CGTGTAACATACACTGAAGCAATAGA-GCGACTTGAGAAA 1266
||| | || | ||| | || ||||||||||| ||||||||| | || ||||||||||
Sbjct 1135 GCCTC-GACTGGGTTTG-GTCGAGTAACATACACCGAAGCAATA-ACGCTACTTGAGAAA 1191
Query 1267 GCTGTAGCTCAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGTGGGGAATCGACTTGGCC 1326
||||| |||||||||||| ||| || ||| |||||||||||||||||||||| ||
Sbjct 1192 GCTGTGGCTCAAGGAAAGAAA-TTT--GAGAACCAAGTGGAGTGGGGAATCGACTTAGCA 1248
Query 1327 TCAGAGCATGAAAG 1340
|| |||||||||||
Sbjct 1249 TCTGAGCATGAAAG 1262
> Ahg926121 jgi|Araly1|926121|scaffold_201682.1
Length=1534
Score = 479 bits (259), Expect = 4e-134
Identities = 477/579 (82%), Gaps = 27/579 (5%)
Strand=Plus/Plus
Query 1147 GATGACATGGAACTTATGGATAAGAACGTCGACGAGGGATGCACTAAAAGGCTA-AACAT 1205
||||||||||||||||| | ||||| |||||||| | |||| | | |||||| || ||
Sbjct 954 GATGACATGGAACTTAT-G--AAGAATGTCGACGAAGCCTGCATTCACAGGCTACAA-AT 1009
Query 1206 GGTTGCCAAAG-CCTCGTTT-AAGCGTGTAACATACACTGAAGCAATAGA-GCGACTTGA 1262
||||||| | | |||||| || || ||||||||||| |||||||| | | ||| ||
Sbjct 1010 GGTTGCC-TTGACTTCGTTTGAA-CGAGTAACATACACCAAAGCAATA-ACTCTACTCGA 1066
Query 1263 GAAAGCTGTAGCTCAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGTGGGGAATCGACTT 1322
| ||||||| ||| ||||||| | ||||| ||| |||||||| || |||| |||||
Sbjct 1067 GGAAGCTGTGGCTAAAGGAAA-G--AAATTTGAGAACCAAGTGGAGCGGAGAATGGACTT 1123
Query 1323 GGCCTCAGAGCATGAAAGATACTTGACAGAGGTTGAGTTTG-ATCAAAAGCCAATAATTG 1381
|| || ||||||||||||||||| ||||||| | |||| || ||||||| | ||||
Sbjct 1124 AGCATCTGAGCATGAAAGATACTTAACAGAGG-T---TTTGTATAAAAAGCCTGTTATTG 1179
Query 1382 TGTATAACTACCCGAAAGGA-ATCAAAGCTTTTTACATGAGACTTAACGATGAT-GAGAA 1439
| ||||||||||||||| || ||||||||||| ||||||||||||||||||||| || ||
Sbjct 1180 TCTATAACTACCCGAAA-GAGATCAAAGCTTTCTACATGAGACTTAACGATGATGGA-AA 1237
Query 1440 GACAGTTGCTGCCA-TGGATGTCCTTGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCC 1498
||||||||||| || | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1238 GACAGTTGCTG-CATTTGATGTCCTCGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCC 1296
Query 1499 AAAGGGAAGAACGATATG-ATGTTATCAAACAGAGGATCGAGGAGATGGGTCTACCAATG 1557
||||||||||||| ||| | ||| ||| | || || ||||||| ||||||||||||
Sbjct 1297 AAAGGGAAGAACGG-ATGGACGTTCTCATGGAAAGAATGGAGGAGAAGGGTCTACCAATA 1355
Query 1558 GAGCCATATGAGTGGTACCTAGACTTGCGTCGTTATGGAACAGTGAAGCATTGTGGATTT 1617
|| ||| ||||||||| | |||||| | ||| |||||||||||||||||| |||||||
Sbjct 1356 AAGGAATACGAGTGGTACATTGACTTGAGACGTCATGGAACAGTGAAGCATTCTGGATTT 1415
Query 1618 GGACTTGGCTTCGAACGTATGATTCAGTTCGCTACAGGAATTGATAACATCAGAGATGTT 1677
||||| ||||| || |||||| ||| || ||||||||||| ||||| || ||||| |||
Sbjct 1416 GGACTGGGCTTGGAGCGTATGCTTCTCTTTGCTACAGGAATGGATAATATTAGAGACGTT 1475
Query 1678 ATTCCTTTCCCTCGCTATCCTGGAAAAGCTGATCTCTGA 1716
||||| ||||||||||||||||||| |||||| || |||
Sbjct 1476 ATTCCCTTCCCTCGCTATCCTGGAAGAGCTGACCTTTGA 1514
Score = 291 bits (157), Expect = 2e-77
Identities = 425/548 (78%), Gaps = 43/548 (8%)
Strand=Plus/Plus
Query 120 CGGCGGAGCTAAACTCGCCGGTCAAAAGGTTAG-AATCGGTGGTTGGGTTAAAACCGGAA 178
||| |||||| ||| |||||||| |||| | | |||| | || |||||||||| ||||
Sbjct 158 CGGTGGAGCTGGACTTGCCGGTCAGAAGG-TCGAAATCAGCGGGTGGGTTAAAAAGGGAA 216
Query 179 GACAGCAAGGGAAAGGGACTTTTGCTTTCCTTGAGGTTAACGATGGGTCTTGTC-CAGCG 237
| ||||||| ||||||||||| ||||| |||||||| |||||||| || || | |||||
Sbjct 217 GGGAGCAAGGAAAAGGGACTTTCGCTTTTCTTGAGGTGAACGATGGATCCTG-CGCAGCG 275
Query 238 AATCTCCAGGTTATGGTTGATTCATCTCTTTAT--GATCTCTCTAGGTTGGTTGCGACTG 295
||||| ||||| | ||| ||| | | ||| ||| |||||||| | ||||||| |||| |
Sbjct 276 AATCTTCAGGTCAAGGTGGATGC-T-TCTGTATCAGATCTCTCCAAGTTGGTTACGACCG 333
Query 296 GAACTTGTGTTACTGTTGATGGAGT-TTTGAAGATTCCTCCGGAAGGTAAAGGTTTGAAG 354
||||| || | || ||||||| | |||||||||||||||| ||||||||| | |||
Sbjct 334 GAACTAGTCTGACCATTGATGG-TTGTTTGAAGATTCCTCCGCAAGGTAAAGCTACGAAA 392
Query 355 CAG-AGTATTGAGCTTAGCGTTGAGACGGTGATTG-CGGTGGGAACTGTTGAT---C-C- 407
||| || ||||||||||||| ||||| ||| |||| | |||||||| || ||| | |
Sbjct 393 CAGAAG-ATTGAGCTTAGCGCTGAGAAGGTCATTGAC-GTGGGAACAGTGGATCAACACG 450
Query 408 G----ACTACGTATCCGCTTCCTAAGACTAAGTTGACTCCT-GAGT-TTCTCAGAGA-TG 460
| ||| | || ||| |||||||||| ||| ||||| || |||| || | |||||
Sbjct 451 GTAAAACTCCATACCCGATTCCTAAGACGAAGCTGACT-CTAGAGTATT-TGAGAGACCA 508
Query 461 TGCTTCATC-TTCGTTCTAGGACTAACTTGATCTCAGCAGTTGCAAGAATCCGTA-ACGC 518
| | | | | ||||| | || || | | ||| |||||||| |||||||||| | |
Sbjct 509 TAC-T-AACTTTCGTGCAAGAACCACCACGATGGCAGCAGTTACAAGAATCCG-ACATAA 565
Query 519 G-CTTGCTTTTGCGACGCATAGtttt-tttCA-AGAACATAG-TTTCCT-TTACATTCAC 573
| ||| | ||||| | || ||||| | | | | ||||| | | | | ||||||||||
Sbjct 566 GATTTG-TCTTGCGGCCCA-CGTTTTCTGTGATA-AACAT-GATAT-ATGTTACATTCAC 620
Query 574 ACTCCTATCATCACAACAAGTGATTGTGAAGGTGCTGGTGAAATGTTCCAAGTGACAACC 633
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 621 ACTCCTATCATCACAACAAGTGATTGCGAAGGTGCTGGTGAAATGTTCCAAGTGACAACT 680
Query 634 TTGATCAA 641
||||||||
Sbjct 681 TTGATCAA 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73095180155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5