BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G70990.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476229 jgi|Araly1|476229|fgenesh2_kg.2__1359__AT1G70990.1 850 0.0
> Ahg476229 jgi|Araly1|476229|fgenesh2_kg.2__1359__AT1G70990.1
Length=663
Score = 850 bits (460), Expect = 0.0
Identities = 617/688 (90%), Gaps = 29/688 (4%)
Strand=Plus/Plus
Query 13 AGTATATCAGTCCCATGCACCCTCTTACCAAACCACCTCACCAAATTTTCAACTCTTTTT 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AGTATATCAGTCCCATGCACCCTCTTACCAAACCACCTCACCAAATTTTCAACTC-TTTT 59
Query 73 ACGTCCAACCAAAGAATCTTCCCAAACCTCTCTTTA-TTCGATTCTCCAGGCATATAACA 131
| |||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 60 ---T--------AGAATCTTCCCAAACCTCTCTTTATTTCGATT-AAAAAACATATAACA 107
Query 132 ACTCTCACCATGCCGGAGAAAACTCGCCGTACAAAGGCTCTCGCCGCCACGCTCTTGACG 191
|||||||||||||||||||||| ||||||||||||||||||| | ||||| || | |||
Sbjct 108 ACTCTCACCATGCCGGAGAAAAATCGCCGTACAAAGGCTCTCACGGCCACTATCCTCACG 167
Query 192 ACAG-TGGTGTTTCTCACGTTTCCAATGATCATCAACGCTTCAGATTCATCAACCAATAG 250
| | || ||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 168 GC-GATGACGTTTCTCGCGTTTCCAATGATTATCAACGCTTCAGATTCATCAACCAATAG 226
Query 251 AAAACTCGAAGAGGATCCTATAAAATGTACACCATGTCTTCAAAACATTCCTCCTCCGTC 310
|||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct 227 AAAACTCGAAGAGGATCCAATAAAATGCACACCTTGTCTCCAAAACATTCCTCCTCC--- 283
Query 311 ACCTCCACCGCCATCACCTCCACCGCCGTCTCAAGCTTGTCCTCCACCACCACTACCTCC 370
||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 284 ACC------GCCATCACCTCCACCGCCGTCTCCAGCTTGTCCTCCACCACCACTGCCTCC 337
Query 371 TTCACCGCCGAAGAAGTCTTATTGTCCACCGCCTCCGTCCACTTACATATACATGACGGG 430
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 338 TTCACCGCCAAAGAAGTCTTATTGTCCACCACCTCCGTCCACTTACATATACATGACTGG 397
Query 431 TCCACCAGGAGAGTTGTATCCCATTGACCAGCAGTTTGGAGCGGCTGTTACAAAAAGCTT 490
||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||
Sbjct 398 TCCACCAGGAGAGTTGTATCCCATTGATCAGCAGTTTGGAGCGGCTGCTGCAAAAAGGTT 457
Query 491 CACCGTGGTGAAGATCTCAGGCCTGATCGCGTTTGGGGTTATGAGTTTCTTGATGATCAT 550
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 458 CACGGTGGTGAAGATCTCAGGCCTGATCGCGTTTGGAGTTATGAGTTTCTTGATGATCAT 517
Query 551 GAATTGATGATGTTTCGTTGACCCCCTT-TTTATCGTTTCATAGATTCGTTTACTTTTAA 609
||| ||||| |||||||||||| | || ||||||||||||||||||||||||||||| |
Sbjct 518 GAACTGATGTTGTTTCGTTGACTCG-TTGTTTATCGTTTCATAGATTCGTTTACTTTTGA 576
Query 610 CGGATGGGTATATGTTGTTCAGATAACTCTGAATTACTTATTATCTC-ATAAATTAACGA 668
|||||||||||||||||||||||||||||| ||||| | |||||| | |||||||| |||
Sbjct 577 CGGATGGGTATATGTTGTTCAGATAACTCTTAATTAATGATTATC-CGATAAATTATCGA 635
Query 669 TTGTGCATTTTCTCTTAGGTTAGGATCA 696
|||||||||||||||| |||||||||||
Sbjct 636 TTGTGCATTTTCTCTTTGGTTAGGATCA 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5