BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G71000.1

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316086 jgi|Araly1|316086|fgenesh1_pm.C_scaffold_2001119           396    9e-110


> Ahg316086 jgi|Araly1|316086|fgenesh1_pm.C_scaffold_2001119
Length=441

 Score =  396 bits (214),  Expect = 9e-110
 Identities = 240/253 (95%), Gaps = 0/253 (0%)
 Strand=Plus/Plus

Query  1    ATGGAAGGTGGCATTAGGCAAACGTATTACGAGATTCTCGGTGTTGCCGTTGATTCTTCG  60
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAGGTGGCATTAAGCAAACGTATTACGAGATTCTCGGTGTTGCCGTTGATTCTTCG  60

Query  61   GCGGAGCAGATACGACGAGCATATCACAAGCTTGCTAAGATATGGCATCCTGACCGGTGG  120
            ||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||
Sbjct  61   GCGGAGCAGATACGACGTGCATATCACAAGCTTGCTATGAGATGGCATCCTGACCGGTGG  120

Query  121  ACGAAAGATCCTTTTAGATCTGGAGAAGCTAAACGAAGATTCCAGCAGATTCAAGAAGCT  180
            || |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct  121  ACAAAAGATCCTTTTAGGTCTGGTGAAGCTAAACGAAGATTTCAGCAAATTCAAGAAGCT  180

Query  181  TATTCAGTTTTGTCGGATGAGAGGAAACGAAGCTCGTACGACGTTGGACTCTATGATTCT  240
            |||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||
Sbjct  181  TATTCAGTTTTGTCGGATGAGAGGAAACGAAGCTTGTACGATGTTGGACTGTATGATTCT  240

Query  241  GGAGAAGATGAGG  253
            || ||||||||||
Sbjct  241  GGTGAAGATGAGG  253


 Score =  296 bits (160),  Expect = 9e-80
 Identities = 185/197 (94%), Gaps = 1/197 (1%)
 Strand=Plus/Plus

Query  303  AAGA-GAGGAAAAGCAATACAGCTTGGAAGAGCTACAGACAATGGTCGATGACATGGTCT  361
            |||| ||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct  245  AAGATGAGGAAAAGCAGTACAGCTTGGATGAGTTGCAGACAATGGTCGATGACATGGTCT  304

Query  362  ATGAGTTCCAATCAGAACCATTGTTCCAGAACCAATCAATGCAAATGAATTTCGACTTGA  421
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  305  ATGAGTTCCAATCAGAACCATTGTTCCAGAACCAATCAATTCAAATGAATTTCGACTTGA  364

Query  422  ACCAAACGCCTGATTGGCATTCACAGATGTCTCTACCGCTTTCAAGCTTTGAGTTCTATT  481
            ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct  365  ACCAACCGCCTGATTGGCATTCACAGATGTCTCTGCCGCTTTCAAGCTTTGAGTTCTATC  424

Query  482  CTCAAAGCAGCTACTGA  498
            | || || |||||||||
Sbjct  425  CGCAGAGTAGCTACTGA  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18085749186


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5