BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71015.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926445 jgi|Araly1|926445|scaffold_202006.1 990 0.0
> Ahg926445 jgi|Araly1|926445|scaffold_202006.1
Length=635
Score = 990 bits (536), Expect = 0.0
Identities = 604/636 (95%), Gaps = 8/636 (1%)
Strand=Plus/Plus
Query 80 ACACAACATCATTCACCAAAATGGGAAATAGCTTGGGAACCAAGAAAACAGCGACAATCA 139
||| ||||||||||||||||||||| |||||||||| || ||||||||| |||| |||||
Sbjct 1 ACAAAACATCATTCACCAAAATGGGTAATAGCTTGGTAAGCAAGAAAACTGCGAAAATCA 60
Query 140 TGAACATCAATGGCGAGAGTTTCAAACTGAAAACGCCTGTGGAAGCTGGTACAGTGGTTA 199
||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct 61 TGAACATCAATGGCGAGAGTTTCAAGCTGAAAACGCCGGTGAAAGCTGGTACAGTGGTTA 120
Query 200 AAGATTTTCCAGGCCACGTTCTCTTGGAATCCGAAGCAGTGAAGCG-TTTAGGAATCAGA 258
|||||||||| ||||| |||||||||||||||||||||||||||| ||| || ||||||
Sbjct 121 AAGATTTTCCGGGCCATATTCTCTTGGAATCCGAAGCAGTGAAGCGATTT-GGGATCAGA 179
Query 259 GCAAAGCCCTTGGAGCCTCACCAAAACTTGGAATCCAAAAGGATTTACTTCATGGTTGAA 318
||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |||
Sbjct 180 GCAAAGCCCTTAGAGCCACACCAAAACTTGGAATCCAAAAGGCTTTACTTCATGGTGGAA 239
Query 319 CTTCCAAGAACATGGAAAGAGAGAACTCCAAGAAGGGTTCGGTCGGGAATCCAGATGAGT 378
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 CTTCCAAGAACATGGAAAGAGAGAACCCCAAGAAGGGTTCGGTCGGGAATCCAGATGAGT 299
Query 379 GCGAAGGAGAGATTAGAGAATCTGAAGCTGTCTCGTAGATCATCATCTGATCTCTCGGTA 438
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCGAAGGAGAGACTAGAAAATCTGAAGCTGTCTCGTAGATCATCATCTGATCTCTCGGTA 359
Query 439 ATGAAGAAGAAGAC--A-GAGGTTAATGATGAAGAGAGAGAAGTGAGTAGCGTGAAGTTG 495
|||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 ATGAAGAAGAAGACAGAGGAGGTTGATGATGAAGAGAGAGAAGTGAGTAGCGTGAAGTTG 419
Query 496 AAGTTACCAAAGTGGAAAATTGAGAAACTGAGGAAAGAGAGTGAGAGTGGCTCTGATTTC 555
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGTTACCAAAGTGGAAAATTGAAAAACTGAGGAAAGAGAGTGAGAGTGGCTCTGATTTC 479
Query 556 TCCAACAAGATCACACAACTTTGTCTCCTTCACATACCAAGTGGTTTGATTCATCAAAGA 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCCAACAAGATCACACAACTTTGTCTCCTTCACATACCAAGTGGTTTGATTCATCAAAGA 539
Query 616 CAACA---TTTGCTTCGTAATGGAGGAAGAAACTTTGGGATTGAAGAAAAAGAAGAAGGT 672
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAACAACATTTGCTTCGTAATGGAGGAAGAAACTTTGGGATTGAAGAAAAAGAAGAAGGT 599
Query 673 GCCAAAATCACATGAGGTGATCAATACTTTTGAAGG 708
|||||||||||||||||||||||||| |||| ||||
Sbjct 600 GCCAAAATCACATGAGGTGATCAATATTTTTTAAGG 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5