BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71020.1
Length=2185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476233 jgi|Araly1|476233|fgenesh2_kg.2__1363__AT1G71020.1 3081 0.0
Ahg472553 jgi|Araly1|472553|fgenesh2_kg.1__2507__AT1G23030.1 1153 0.0
> Ahg476233 jgi|Araly1|476233|fgenesh2_kg.2__1363__AT1G71020.1
Length=2131
Score = 3081 bits (1668), Expect = 0.0
Identities = 1974/2119 (93%), Gaps = 32/2119 (2%)
Strand=Plus/Plus
Query 35 AAATTCGAATTTTAAGCCGCCGTGTGAGACGGCGTAATGGCTGGTGGAGCTATCACTCCC 94
|||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 AAATTCGAATTTCAAGCCGCCGTATGCGACGGCGTAATGGCTGGTGGAGCTATCACTCCC 60
Query 95 GATTCTCTCATCGGTCTTAT-TGCTGAAATCAATGAGATTCCGGGGAATTTTGGTTTGTT 153
| |||||| |||| |||||| | | |||||||||| | |||||| ||||||||| ||||
Sbjct 61 GCTTCTCTGATCGATCTTATCT-CCGAAATCAATGGGGTTCCGGTGAATTTTGGGGTGTT 119
Query 154 TAAGAAGGATTGTTCCGATCTCGCGCGACGAGTCGGTCTCCTGACGCATTTGATTGAGGA 213
||||||||||||| |||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 120 TAAGAAGGATTGTGCCGATCTCGCGCGACGTGTTGGTCTCTTGACGCATTTGATTGAGGA 179
Query 214 AATCAGGGATTC-T-T-CTCCGCCGTCGGAATCTGATGCTTCTTCTTCGTTGAATTCTCA 270
|| |||||||| | | |||| ||| |||||||||||||||| || ||||||| |||| |
Sbjct 180 GATTAGGGATTCTTCTCCTCCTCCGCCGGAATCTGATGCTTCGTCGTCGTTGATTTCTTA 239
Query 271 TGAATGTGATTGGTGGTCTGATCTTGTGGTGGGACTTCAAGCCGCGAAGCGTCTTTTGTC 330
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 240 TGAATGTGATTGGTGGTCTGATCTTGTTGTGGGGCTTCAAGCCGCGAAGCGTCTTTTGTC 299
Query 331 TTCAGCTACTAGTTTCCAAGCTCGCGAGTCCTCTGATGGGGCAGCCAAGAGGATCTCATT 390
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||
Sbjct 300 TTCAGCTACTAGTTTCCAAGCTCGCGAGTCCTCTGATGGGGCTGCCAAGAGAATCTTATT 359
Query 391 CCAGTTCCAATGTGTTACATGGAAGCTGGAGAAAGCATTAGGTGATTTGACATATGATAG 450
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 360 CCAGTTCCAATGTGTTACATGGAAGTTGGAGAAAGCATTAGGTGATTTGCCATATGATCG 419
Query 451 ATATGATATCTCTGACGAAGTCCGTGAACAGGTGGAACTAGCAAGATTACAGTTAAGAAG 510
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 420 ATATGACATCTCTGACGAAGTCCGCGAACAGGTGGAACTAGCAAGATTGCAGTTAAGAAG 479
Query 511 AGCAATGCAGAGATATGGATCGTTAAATTCGAAGAAGTTCTCGAGTGGTTTATCTGAGCC 570
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 480 AGCAATGCAGAGATATGGATCTTTAAATTCGAAGAAGTTCTCGAGTGAATTATCTGAGCC 539
Query 571 AATGGAGAAAGATGCCTCAAG---TA-ATAGA--AAAGTTATTGAAAAGTTGGAGAGTAT 624
||||||||||||||||||||| || | ||| ||||||||||| ||||||||||||||
Sbjct 540 AATGGAGAAAGATGCCTCAAGCAATACAAAGAGCAAAGTTATTGAGAAGTTGGAGAGTAT 599
Query 625 TCCAGAGACAGTG-----C-A--TT-CTTTATCAGATGAGAAGAAATTTGAATCACCCCC 675
||||||||| ||| | | || ||||||||||||||||||||||||||||||| ||
Sbjct 600 TCCAGAGACGGTGCATTCCAACGTTCCTTTATCAGATGAGAAGAAATTTGAATCACCGCC 659
Query 676 TCCTTGGAAGAGCTCTTCAGTATCATTGGCCTTCTTTTTATCAAAGGATGGTGATGATGA 735
|||| ||||||||||||| || || ||||||||||||||||||||||||| ||| |||||
Sbjct 660 TCCTCGGAAGAGCTCTTCGGTTTCCTTGGCCTTCTTTTTATCAAAGGATGCTGACGATGA 719
Query 736 GAGATTAGAGAAAGCAGTTACCGAGAACAGCGATGACTCACAGAAATCGGATAATCTCAC 795
|||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||
Sbjct 720 GAGATTAGAGAAAGTAGTTACCAAGAACAGTGATGACTCACAGAAATCGGATAAACTCAC 779
Query 796 GATTCCAGAGGACTTTCTTTGTCCAATCTCTCTGGAACTGATGAAGGATCCTGCTATTGT 855
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GATCCCTGAGGATTTTCTTTGTCCAATCTCTCTGGAACTGATGAAGGATCCTGCTATTGT 839
Query 856 TTCCACAGGACAGACATACGAGAGGTCGTTCATTCAGAGATGGATAGACTGTGGAAATCT 915
||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 840 TTCCACAGGACAGACATACGAGAGGTCGTACATACAGAGGTGGATAGACTGTGGAAATCT 899
Query 916 GAGCTGCCCAAAGACACAGCAGAAACTTGAAAACTTTACTCTTACTCCAAACTATGTCCT 975
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 900 AAGATGCCCAAAGACCCAGCAGAAACTCAAAAACTTTACTCTTACTCCAAACTATGTCCT 959
Query 976 CAGAAGCCTGATATCTCAGTGGTGCACTAAGCACAACATTGAGCAACCAGGTGGTTACAT 1035
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CAGAAGCCTGATATCACAGTGGTGCACTAAGCACAACATTGAGCAACCAGGTGGTTACAT 1019
Query 1036 GAACGGTAGGACCAAAAACAGTGATGGGTCTTTCCGTGATCTAAGTGGAGATATGTCAGC 1095
||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 GAACGGTAGGACCCAAAACCCTGATGGGTCTTTCCGTGATCTAAGTGGAGACATGTCAGC 1079
Query 1096 GATCCGAGCATTGGTTTGTAAACTCTCTAGCCAATCAATCGAAGACCGCAGGACTGCGGT 1155
|||||| |||||||| ||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1080 GATCCGGGCATTGGTGCGTAAACTCTCTAGCCGATCAATCGAAGAGCGCAGGACTGCGGT 1139
Query 1156 TTCTGAAATCCGCTCTCTGTCAAAAAGAAGCACAGACAACCGAATTCTGATTGCAGAGGC 1215
|||||||||||| ||||||||||||| |||||| || ||||| |||||| ||||||| ||
Sbjct 1140 TTCTGAAATCCGTTCTCTGTCAAAAACAAGCACGGATAACCGCATTCTGCTTGCAGAAGC 1199
Query 1216 AGGAGCCATCCCTGTTTTGGTCAAGCTTTTGACCTCAGATGGTGACACTGAAACGCAGGA 1275
|||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 1200 AGGAGCCATCCCTGTTTTGGTCAAGCTTTTGATCTCAGA--G-GACACTGAAACGCAGGA 1256
Query 1276 AAATGCTGTCACTTGCATTCTTAACCTCTCCATATACGAACACAACAAAGAACTGATCAT 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AAATGCTGTCACTTGCATTCTTAACCTCTCCATATACGAACACAACAAAGAACTGATCAT 1316
Query 1336 GCTTGCAGGAGCAGTCACATCTATAGTGCTAGTCCTCCGAGCTGGAAGCATGGAAGCTAG 1395
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1317 GCTTGCAGGAGCAGTCACGTCTATAGTGCTAGTCCTCCGAGCTGGAACCATGGAAGCTAG 1376
Query 1396 AGAAAACGCTGCAGCTACTCTCTTTAGTCTTTCGTTAGCTGATGAGAACAAGATCATTAT 1455
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1377 AGAAAACGCTGCAGCTACTCTCTTTAGCCTTTCGTTAGCTGATGAAAACAAGATCATAAT 1436
Query 1456 AGGCGCATCAGGTGCGATAATGGCCTTAGTGGATCTGCTTCAATATGGAAGCGTCAGAGG 1515
||||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||
Sbjct 1437 AGGCGCATCGGGTGCGATACTGGCCTTAGTGGATCTGCTTCAGTATGGAAGCACCAGAGG 1496
Query 1516 GAAGAAAGACGCAGCTACGGCTCTGTTCAACTTGTGTATTTACCAGGGAAACAAAGGCAG 1575
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1497 GAAGAAAGACGCAGCTACGGCTCTGTTTAACTTGTGTATTTATCAGGGAAACAAAGGCAG 1556
Query 1576 AGCAGTTAGAGCCGGTATAGTAAAGCCATTGGTGAAAATGCTGACAGACTCCTCGAGCGA 1635
||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1557 AGCGGTTAGAGCCGGTATAGTAAACCCATTGGTGAAAATGCTGACTGACTCCTCGAGCGA 1616
Query 1636 GAGGATGGCTGATGAAGCCTTGACCATACTCTCGGTTCTAGCTAGTAACCAAGTCGCGAA 1695
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 CAGGATGGCCGATGAAGCCTTGACCATACTCTCGGTTCTAGCTAGTAACCAAGTCGCGAA 1676
Query 1696 AACTGCGATTTTGAGAGCCAACGCAATACCACCTTTGATAGATTGTCTCCAGAAGGATCA 1755
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1677 AACTGCGATTTTGAGAGCCAACGCGATACCACCTTTGATAGATTGTCTCCAGAAGGATCA 1736
Query 1756 ACCGCGAAACCGAGAGAACGCAGCTGCGATACTACTGTGTCTTTGCAAGAGAGATACTGA 1815
|||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 1737 ACCGCGAAACCGAGAGAATGCAGCTGCGATACTACTATCTCTTTGCAAGAGAGATACTGA 1796
Query 1816 AAAACTGATCTCCATTGGTAGACTTGGAGCTGTTGTTCCATTGATGGAACTATCAAGAGA 1875
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 AAAACTAATCTCCATTGGTAGACTTGGAGCTGTTGTTCCATTGATGGAACTATCAAGAGA 1856
Query 1876 CGGTACAGAGAGAGCTAAACGAAAAGCTAATTCTTTACTAGAGCTTCTCCGTAAATCATC 1935
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1857 TGGGACAGAGAGAGCTAAACGAAAAGCTAATTCTTTGCTAGAGCTTCTCCGTAAATCATC 1916
Query 1936 CCGAAAATTAGGTTCACTCTAAATAGCCCTTAACATGAATTAATTTAGTTTTGCTGGCTA 1995
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1917 CCGAAAATTAGGTTCACTCTAAATAGCCCTTAACAAGAATTAATTTAGTTTTGCTGGCTA 1976
Query 1996 TTGATCTGTTTATTATGTCCTGTATC-TTATTGAGTTTTTGGAAGACTAATTTAATTTCC 2054
||||||||||||||||||||||| | || ||||||||||||| |||||||| |||||||
Sbjct 1977 TTGATCTGTTTATTATGTCCTGTTTTATTTTTGAGTTTTTGGATGACTAATT-AATTTCC 2035
Query 2055 ATTTGAGGAGAAG-G-TGGAGTCAAAAGAGTTAACGAGAATCGAACTCTTT---GACTCA 2109
||| ||| | ||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2036 ATTGGAG-A-AAGTGGTGGAGTCAAAAGAGTTAACGAGAATCGAACTCTTTTTTGACTCA 2093
Query 2110 TCTTTGTATTGATTTGTTA 2128
||||||||||||||||||
Sbjct 2094 CCTTTGTATTGATTTGTTA 2112
> Ahg472553 jgi|Araly1|472553|fgenesh2_kg.1__2507__AT1G23030.1
Length=2182
Score = 1153 bits (624), Expect = 0.0
Identities = 1442/1823 (79%), Gaps = 112/1823 (6%)
Strand=Plus/Plus
Query 152 TTT-AAGAAGGATTGTTCCGATCTCGCGCGACGAGTCGGTCTCCTGACGCATTTGATT-G 209
||| ||||||||||| | |||||| | ||||||||| ||||| ||||||||||| || |
Sbjct 182 TTTCAAGAAGGATTGCGCGGATCTCACTCGACGAGTCTGTCTCTTGACGCATTTG-TTAG 240
Query 210 AGGAAATCAGGGATTCTTCTCCGCCGTCGGAATCTGATGCTTCTTCTTCGTTGAATTCTC 269
| || || || || || ||||| || || || | |||||| || |||| | |
Sbjct 241 AAGAGATTAGAGACTCAACTCCG--ATC-GATTCCGCTGCTTCGTCGTCGTCGGA----- 292
Query 270 ATGAATGTGATTGGTGGTCTGATCTTGTGGTGGGACTTCAAGCCGCGAAGCGTCTTTTGT 329
| || ||| ||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 293 A--AA--TGACTGGTGGTCTGATCTTGTGGCGGGACTTCAAGCCGCGAAGCGTCTTCTCT 348
Query 330 CTTCAGCTACTAGTTTCCAAGCTCGCGAGTCCTCTGATGGGGCAGCCAAGAGGATCTCAT 389
| ||||| | | |||||||||||||| ||||||||||| || || ||||| |||||||
Sbjct 349 CCACAGCT-C--GATTCCAAGCTCGCGATTCCTCTGATGGTGCTGCGAAGAGAATCTCAT 405
Query 390 TCCAGTTCCAATGTGTTACATGGAAGCTGGAGAAAGCATT-AGGTGAT-TTGACATATGA 447
|||||||||||||||||||||||||||| ||||||||||| || || || |||||||
Sbjct 406 TCCAGTTCCAATGTGTTACATGGAAGCTTGAGAAAGCATTGAGCA-ATCTTC-CATATGA 463
Query 448 TAGATATGATATCTCTGACGAAGTCCGTGAACAGGTGGAACTAGCAAGATTACAGTTAAG 507
| |||||||||||||||||||| | ||||| ||||| ||||| |||| ||||| |
Sbjct 464 TCTTTATGATATCTCTGACGAAGTTGGAGAACAAGTGGAGCTAGCGAGATCGCAGTTGCG 523
Query 508 AAGAGCAATGCAGAGATATGGATCGTTAAATTCGAAGAAGTTCTCGAGTGGTTTATCTGA 567
||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct 524 AAGAGCAATGCAGAGATATGGATCGTTGAATTCGAATAAGTTCTCGAGTGCTTTATCTGA 583
Query 568 GCCAATGGAGAAAGATGC-CT---CAA-GTAATA--GA--AAAGTT-ATTGAAAAG-TTG 616
||||||||||| ||||| || ||| || ||| || |||| | | |||||| |||
Sbjct 584 GCCAATGGAGAGAGATGGTCTTAGCAATGTTATAAAGATCAAAGCTGAG-GAAAAGCTTG 642
Query 617 GAGAGTATTCCAGAGACAGTGCATTCTT-TATCAG-ATGAGAAGAAATTTGAATCACCC- 673
||||| || |||| ||| | |||| || | | || | ||| ||||| || || |||
Sbjct 643 -AGAGTGTTTCAGAAACACTTCATT-TTGT-TGAGGAGGAGGAGAAACAAGATTC-CCCA 698
Query 674 CCTCCTT-GGAAGA-GCTCTTC-AGTATCATTGGCCTTCTT-TTTATCAAAGGATGGTGA 729
|||| | ||| || ||||||| | | || ||||| || || ||| || ||||||| |||
Sbjct 699 CCTC-TAAGGA-GAAGCTCTTCCATT-TCGTTGGC-TTATTATTTGTCCAAGGATGCTGA 754
Query 730 TGAT-GAGAGATTAGAGAAAGCAGTTACCGAGAACAGC-GATGACTC-ACAGAAATCGGA 786
| | || |||||||| ||| |||| | |||||| | ||||| || | |||| || ||
Sbjct 755 T-ACCGATAGATTAGACAAAATGGTTAACAAGAACA-CTGATGAATCGA-AGAAGTCTGA 811
Query 787 TAATCTCACGATTCCAGAGGACTTTCTTTGTCCAATCTCTCTGGAACTGATGAAGGATCC 846
||| ||||||||||| | || ||||||||||| | || ||||||||||||||||||||
Sbjct 812 TAAACTCACGATTCCGGTTGATTTTCTTTGTCCGGTGTCGCTGGAACTGATGAAGGATCC 871
Query 847 TGCTATTGTTTCCACAGGACAGACATACGAGAGGTCGTTCATTCAGAGATGGATAGACTG 906
| ||||||| | ||||||||||| || |||||| ||| ||| ||||||||||| |||||
Sbjct 872 AGTTATTGTTGCTACAGGACAGACTTATGAGAGGGCGTACATACAGAGATGGATCGACTG 931
Query 907 TGGAAATCTGAGC-TGCCCAAAGACACAGCAGAAACTTGAAAACTTTACTCTTACTCCAA 965
||| ||||| | | || || ||||| ||||||||||| ||||||||||| ||||| ||||
Sbjct 932 TGGGAATCTAA-CATGTCCTAAGACTCAGCAGAAACTCGAAAACTTTACGCTTACACCAA 990
Query 966 ACTATGTCCTCAGAAGCCTGATATCTCAGTGGTGCACT-AAGCACAACATTGAGCAACCA 1024
||||||| ||||||||||| || |||| |||||||||| || |||||||||||||||||
Sbjct 991 ACTATGTTCTCAGAAGCCTCATCTCTCGGTGGTGCACTGAA-CACAACATTGAGCAACCT 1049
Query 1025 GGTGGTTACATGAACGGTAGGACCAAAAACAGTGATGGGTCTTTCCGTGATCTAAGTGGA 1084
| |||||||| ||||| ||| | |||||||||| | | | | || | ||| |
Sbjct 1050 GCAGGTTACATTAACGGCAGGTCAAAAAACAGTG--GAGA-TAT--GT---CG--GTG-A 1098
Query 1085 GATATGTCAGCGATCCGAGCATTGGTTT-GTAAACTCTCTAGCCAATCAATC-GAAGACC 1142
| | || | || |||||| | | |||||| |||| |||| | || || |
Sbjct 1099 --T----C--CG----G-GCCTTGGTTCAG-AGACTCTCAAGCCGGTCAA-CAGAGGATC 1143
Query 1143 GCAGGACTGCGGTTTCTGAAATCCGCTCTCTGTCAAAAAGAAGCACAGACAACCGAATTC 1202
| |||| |||||||||||||||||| ||||||||||| |||||||| ||||| || ||||
Sbjct 1144 GAAGGAATGCGGTTTCTGAAATCCGGTCTCTGTCAAAGAGAAGCACGGACAATCGCATTC 1203
Query 1203 TGATTGCAGAGGCAGGAGCCATCCCTGTTTTGGTCAAGCTTTTGACCTCAGATGGTGACA 1262
|||||||||| |||||||| |||||||||||||| || ||||| |||||||| || ||
Sbjct 1204 TGATTGCAGAAGCAGGAGCAATCCCTGTTTTGGTGAACCTTTTAACCTCAGA-GG--ACG 1260
Query 1263 CTGAAACGCAGGAAAATGCTGTCACTTGCATTCTTAACCTCTCCATATACGA-ACACAAC 1321
|| |||||||||||| || | || || |||| |||||||| ||||| || | |||||
Sbjct 1261 TTGCAACGCAGGAAAACGCAATTACATGTGTTCTCAACCTCTCTATATATGAGA-ACAAC 1319
Query 1322 AAAGAACTGATCATGCTTGCAGGAGCAGTCACATCTATAGTGCTAGTCCTCCGAGCTGGA 1381
||||| ||||| ||| |||| || |||||||| || || || | |||||| |||| |||
Sbjct 1320 AAAGAGCTGATAATGTTTGCTGGTGCAGTCACCTCAATCGTTCAAGTCCTTAGAGCCGGA 1379
Query 1382 AGCATGGAAGCTAGAGAAAACGCTGCAGCTACTCTCTTTAGTCTTTCGTTAGCTGATGAG 1441
| ||||||||| ||||||||||| ||||| || || ||||| ||||||||||| ||||||
Sbjct 1380 ACCATGGAAGCAAGAGAAAACGCAGCAGCGACACTTTTTAGCCTTTCGTTAGCCGATGAG 1439
Query 1442 AACAAGATCATTATAGGCGCATCAGGTGCGATAA-TGGCCTTAGTGGATCTGCTTCAATA 1500
||||||||||| || |||| ||| ||||||||| || ||||||||||||||||| || |
Sbjct 1440 AACAAGATCATAATCGGCGGATCGGGTGCGATACCTG-CCTTAGTGGATCTGCTTGAAAA 1498
Query 1501 TGGAAGCGTC-AGAGGGAAGAAAGACGCAGCTACGGC-TCTGTTCAA-CTTGTGTATTTA 1557
|| | | | |||||||||||||| ||||| ||||| | ||||||| || || |||||
Sbjct 1499 CGGGACCC-CGAGAGGGAAGAAAGATGCAGCCACGGCAT-TGTTCAATCTC-TGCATTTA 1555
Query 1558 CCAGGGAAACAAAGG-CAGAGCAGTTAGAGCCGGTATAGTAA-AGCCATTGGTGAAAATG 1615
|| ||||||||||| | |||| || |||||||||||||||| ||| |||||| || |||
Sbjct 1556 TCATGGAAACAAAGGTC-GAGCGGTCAGAGCCGGTATAGTAACAGC-ATTGGTTAAGATG 1613
Query 1616 CTGACAGACTCCTCGAGCGAGAGGATGGCTGATGAAGCCTTGACCATACTCTCGGTTCTA 1675
|||| || ||| | || | |||||| ||||||||| ||||| || ||||| |||||
Sbjct 1614 CTGAGTGATTCCACCCGCCACCGGATGGTTGATGAAGCTTTGACAATTCTCTCAGTTCTT 1673
Query 1676 GCTAGTAACCAAGTCGCGAAAACTGCGATTTTGAGAGCCAACGCAATACCACCTTTGATA 1735
|| | ||| |||| ||||||| | ||||| | | ||| || | |||| | ||||||
Sbjct 1674 GCAAATAATCAAGACGCGAAATCCGCGATAGTAAAAGCGAATACTTTACCTGCATTGATA 1733
Query 1736 GAT-TGTCTCCAGAAGGATCAACCGCGAAACCGAGAGAACGCAGCTGCGATACTACTGTG 1794
| | | |||||||| ||||||| | ||||||||||||| ||||| |||||| ||||||
Sbjct 1734 GGTAT-TCTCCAGACGGATCAAACTAGAAACCGAGAGAATGCAGCAGCGATATTACTGTC 1792
Query 1795 TCTTTGCAAGAGAGATACTGAAAAACTGATCTCCATTGGTAGACTTGGAGCTGTTGTTCC 1854
||| || |||||||| ||||| |||||| |||| || |||||||| || || ||||| ||
Sbjct 1793 TCTGTGTAAGAGAGACACTGAGAAACTGGTCTCTATCGGTAGACTCGGCGCGGTTGTGCC 1852
Query 1855 ATTGATGGAACTATC-AAGAGACGGTACAGAGAGAG-CTAAACGAAAAGCTA-ATTCTTT 1911
||||||||| ||||| |||| | || |||||||||| | ||| |||| || | || ||||
Sbjct 1853 ATTGATGGATCTATCGAAGA-ATGGAACAGAGAGAGGCAAAAGGAAA-GCCATAT-CTTT 1909
Query 1912 ACTAGAGCTTCTCCGTAAATCAT 1934
|||||||||| |||||| |||
Sbjct 1910 GTTAGAGCTTCTACGTAAAGCAT 1932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82236838955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5