BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71030.1
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476235 jgi|Araly1|476235|fgenesh2_kg.2__1365__AT1G71030.1 1149 0.0
> Ahg476235 jgi|Araly1|476235|fgenesh2_kg.2__1365__AT1G71030.1
Length=907
Score = 1149 bits (622), Expect = 0.0
Identities = 827/920 (90%), Gaps = 37/920 (4%)
Strand=Plus/Plus
Query 1 TCAACCCACCAGTCCAAGTCAAACC----TCCTCAAGCCATCCCCTAATCCTATATATCA 56
||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1 TCAACCCACCAGTCCAAGTCAAACCTATATCCTCTATCCATCCCCTAATCCTATATATCA 60
Query 57 GTTT-CTTCTCGCAAACCACCTCACAATCTATCAACAG-----TTTT---aaaaaaaGAC 107
|||| ||||||||||||||||||| |||| |||||||| |||| ||||||| ||
Sbjct 61 GTTTGCTTCTCGCAAACCACCTCATAATCAATCAACAGTTTTTTTTTAAAAAAAAAAAAC 120
Query 108 ATAACTCAACCAATCTCACTTTGAAAAAGACATGAACAAAACCCGCCTTCGTGCTCTCTC 167
||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct 121 ATAACTCAACCAATCTCACTTTGAAAAAGACATGAACAAGAGCCGCCTCCGTGCTCTCTC 180
Query 168 CCCACCTTCCGGTATGCAACACCGT--AAG-AGATGTCGATTGAGAGGTCGAAACTACGT 224
|| |||||||| |||||||||||| || ||||||||||||||||| |||||||| |
Sbjct 181 TCCGCCTTCCGGAATGCAACACCGTGGTAGAAGATGTCGATTGAGAGGAAGAAACTACAT 240
Query 225 AAGGCCAGAAGTTAAACAACGCAACTTCTCAAAAGATGAAGACGATCTCATCCTCAAGCT 284
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGGCCAGAAGTTAAACAAAACAACTTCTCAAAAGATGAAGACGATCTCATCCTCAAGCT 300
Query 285 TCATGCACTTCTTGGCAATAGATGGTCATTGATAGCGGGAAGATTGCCAGGACGAACCGA 344
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 301 TCATGCACTTCTTGGCAATAGATGGTCATTGATAGCGGGCAGATTGCCTGGACGAACGGA 360
Query 345 CAACGAAGTTAGGATCCATTGGGAAACTTACCTAAAAAGGAAGCTCGTAAAAATGGGAAT 404
||||||||||||||||||||||||||||||| |||| ||||||||| | |||||||||||
Sbjct 361 CAACGAAGTTAGGATCCATTGGGAAACTTACTTAAAGAGGAAGCTCATGAAAATGGGAAT 420
Query 405 CGACCCAACCAATCATCGTCTCCACCATCACACCAACTACATTTCTAGACG-TCACCTCC 463
||||||||| ||||||||||||||||| ||||||||||||||||| ||||| | |||||
Sbjct 421 CGACCCAACTAATCATCGTCTCCACCACCACACCAACTACATTTCGAGACGAT-ACCTCA 479
Query 464 ATTCTTCACATAAGGAACATGAAACCA-AGATTATTAGTGATCAATCTTCTTCGGTATCC 522
|||| |||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct 480 ATTCCTCACGTAAGGAACATGAAAC-AGAGATTATTAGTGATCAATCTTCTTCAGTATCC 538
Query 523 GAATCATGTGGTGTAA---CAATTTTGCCCATTCCAAGTACCAATTGCTCGGAGGATAGT 579
||||||| |||| ||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 539 GAATCATCTGGTATAAGTACAATCTTACCCATTCCAAGTACCAATTGCTCGGAGGATAGT 598
Query 580 ACTAGTACCGGACGAAGTCATTTGCCTGACCTAAACATTGGTCTCATCCCGGCCGTGACT 639
|||||||||||||||||||||||||||||||| ||||| | ||||| |||| ||||||||
Sbjct 599 ACTAGTACCGGACGAAGTCATTTGCCTGACCTCAACATCGCTCTCACCCCGACCGTGACT 658
Query 640 TCTTTGCCAGCTCTTTGCCTTCAGGACTCTAGCGAATCCTCTACCAATGGTTCAACAGGT 699
|||||||||||| |||||||||||||| ||| |||||||||| ||| ||||||||||||
Sbjct 659 TCTTTGCCAGCTGGTTGCCTTCAGGACTTTAGTGAATCCTCTAACAAAGGTTCAACAGGT 718
Query 700 CAAGAAACGCTTCTTCTATTCCGATGAGAAATGGT-GTATTTGTTTGTACACATTTGTTA 758
|||||||||||||||||||||| |||| |||| || |||||| ||||||||||| ||||
Sbjct 719 CAAGAAACGCTTCTTCTATTCCAATGA-AAATTGTTGTATTTCTTTGTACACAT--GTTA 775
Query 759 TATTACAAATGCAC--ATATTATAATATTCACTAGAGAGATGGTATAACGATGTTTGAAA 816
|||||||| || | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 776 CATTACAAAGGCCCCTATATTATAATATTCACTAGAGAGATG-TATAACGATGTTTGAAA 834
Query 817 TATGTTAATCCTGAATTGGACCGGCTGGTCATTGAACAACTATTCTCTTAAATGTCCGGT 876
||||||||||||||||||||||| || | |||||||||||||||||||||| |||
Sbjct 835 TATGTTAATCCTGAATTGGACCGT-TG---A---AACAACTATTCTCTTAAATGTCTGGT 887
Query 877 TCTGTTTTCAGTGATTAGTA 896
| ||||||| ||||||||||
Sbjct 888 TTTGTTTTCGGTGATTAGTA 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36636123237
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5