BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71040.1
Length=2079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476236 jgi|Araly1|476236|fgenesh2_kg.2__1366__AT1G71040.1 2680 0.0
Ahg472551 jgi|Araly1|472551|fgenesh2_kg.1__2505__AT1G23010.1 913 0.0
> Ahg476236 jgi|Araly1|476236|fgenesh2_kg.2__1366__AT1G71040.1
Length=1968
Score = 2680 bits (1451), Expect = 0.0
Identities = 1755/1897 (93%), Gaps = 40/1897 (2%)
Strand=Plus/Plus
Query 1 AACTTCTCTCCTCAACTTTTAAGTATTCcacacatacaaacacacacacacacTTGACTT 60
|||||||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 1 AACTTCTCTCCTCAACTTTTAAGTATTCCACACATACAAACACACA-A-ACAC---A--- 52
Query 61 TTCTCATATAATTTCGACAGCTCGTGAAGGACAAAGACATGGAGCCT-----T-CTCGGA 114
| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 53 ----C-----ATTTCGACAGCTCGTGAAGGACAAAGACATGGAGCCTAAGCCTGCTCGGA 103
Query 115 GGAGAATGACCAGAGACATGTTGCTTCTAATCGTAACGATGGCATGGCTCGTAACCGGAG 174
||| |||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||
Sbjct 104 GGATAATGACCAGAGACATGTTCCTCCTAATCGTAGCGATGACATGGCTCGTAACCGGAG 163
Query 175 ACGAAGGAGGCATAAA-GCAAGAGGAGCGACTGTTTAATCTTGGGAAGCTTGAGATGTTC 233
||| |||||||||||| || ||||||||||||||| ||||||| |||||| |||||||||
Sbjct 164 ACGCAGGAGGCATAAAGGC-AGAGGAGCGACTGTTCAATCTTGAGAAGCTAGAGATGTTC 222
Query 234 GTTGACAAGCTTCCTCATATACCAACACTTCATGGCTACCACTTCGTCAATGGCTTCCTC 293
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 223 GTTGACAAGCTTCCTCATATACCTACTCTTCATGGCTACCACTTCGTCAATGGCTTCCTT 282
Query 294 AAACCCAAATCTCTTCACATAGGCATGTTCTTCAAGAAATGGAAATTCCACAGAGACTTG 353
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 AAACCCAAATCTCTTAACATAGGCATGTTCTTCAAGAAATGGAAATTCCACAGAGACTTG 342
Query 354 CCTGCCACGCCAGTGTTCGCATATGGTACATCAAAG-CGT-TCAGCAACAGTTCCTGGAC 411
|||||||||||||||||||| ||||||||||| || ||| | ||| |||||||||||||
Sbjct 343 CCTGCCACGCCAGTGTTCGCGTATGGTACATC-GAGACGTGT-AGCCACAGTTCCTGGAC 400
Query 412 CAACAATAGAAGCTGTTTATGGCGTCGACACCTACGTGACGTGGCGAAATCACCTCCCTT 471
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 401 CGACAATAGAAGCTGTTTATGGAGTCGACACATACGTGACGTGGCGAAATCACCTTCCTT 460
Query 472 TACATCATATCCTCCCTTGGGACCCAACAATCTCTCCGGCAATCCCTAAACACGGCGGCA 531
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 461 TACATCATATCCTCCCTTGGGACCCAACAATCTCCCCTGCAATCCCTAAACACGGCGGCA 520
Query 532 TTCCCACGGTGGTTCACTTGCACGGAGGTATCCACGAACCAACTAGCGATGGAAATGCAG 591
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 521 TTCCCACCGTGGTTCACTTGCACGGCGGCATCCACGAACCAACTAGCGATGGAAATGCAG 580
Query 592 ATTCATGGTTCACCGCTGGTTTCAAAGAAACTGGTTCCAAATGGACCAAAAAGACTACAC 651
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 581 ATTCATGGTTCACCGCTGGTTTCAAAGAGACAGGTTCCAAATGGACCAAAAAGACTACGC 640
Query 652 ATTACGTCAACAAGCAACAACCTGGAAACATGTGGTACCATGACCACGCGGCAGGG-TTG 710
||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 641 ATTACGTTAACAAGCAACAACCTGGAAACATGTGGTACCATGACCACGC-GTTGGGTTTG 699
Query 711 ACCAGAGTCAACCTTCTTGCCGGTTTGTTAGGCT-CTTACATTCTCCGTCATAGCTCAGT 769
||||||||||||||||| |||||||||||||| | ||||||||||||| || ||||| ||
Sbjct 700 ACCAGAGTCAACCTTCTCGCCGGTTTGTTAGG-TGCTTACATTCTCCGCCACAGCTCCGT 758
Query 770 CGAATCGCCTCTTCGGTTACCTACCGGACGCGAATTCGATCGTCCTTTGGTCATCTTTGA 829
|||||||||||| || |||||||||| || ||||| |||||||||||||||||||||||
Sbjct 759 CGAATCGCCTCTCCGACTACCTACCGGCCGTGAATTTGATCGTCCTTTGGTCATCTTTGA 818
Query 830 CCGATCTTTTCGTAAAGATGGTTCCATTTACATGAACGCTACAGGGAACAATCCAACGAT 889
|||| ||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 819 CCGAAGTTTTCGTAAAGATGGTTCCATTTACATGAACGCCACAGGGAACAACCCGTCGAT 878
Query 890 TCATCCACAATGGCAGCCAGAGTATTTCGGCGACGCCATCATTGTGAACGGTAAAGCATG 949
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 879 TCACCCGCAATGGCAGCCAGAGTATTTCGGCGACGCCATCATTGTGAACGGTAAAGCTTG 938
Query 950 GCCGAGATTAACCGTCCGCCGCCGGAAATATAGATTTCGAATCACAAACGCTAGTAACGC 1009
|||| || |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 939 GCCGCGACTAACCGTCCGTCGCCGGAAATATAGATTTCGGATCACAAACGCTAGTAACGC 998
Query 1010 AAGGTTCTTCCGGTTCTTCTTCTCCAACGGTCTCGACTTCATTGTCGTTGGTTCCGATTC 1069
|||||| |||||||| || ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 999 AAGGTTTTTCCGGTTTTTTTTCTCCAACGGTCTCGAATTCATTGTCGTGGGTTCTGATTC 1058
Query 1070 CGCTTATCTAGCGAAACCAGTATCGACCAAATCTGTTCTCCTAGCTCCGTCGGAGATTGT 1129
||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||| |
Sbjct 1059 AGCTTACCTAGCGAAACCAGTATCGACCAAATCAGTTCTACTTGCTCCGTCGGAGATTAT 1118
Query 1130 CGACGTAC-TCGTTGACTTTTCAAAGTCAACATCGAAAACGGCAATTCTTGCCAACAATG 1188
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 CGACGT-CGTCGTTGACTTTTCAAAGTCAACATCGAAAACGGCAATTCTTGCCAACAATG 1177
Query 1189 CACCTTATCCTTACCCGTCGGGAGATCCCGTCACGGAAGAGAACAGCAAAGTCATGAAGT 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 CACCTTATCCTTACCCGTCGGGAGATCCCGTCACGGAAGAGAACAGCAAAGTCATGAAGT 1237
Query 1249 TTATAATCAACTACAAATCAGAAGTTGACACGTCGATTATTCCGAAGAAGCTAATTGAAT 1308
||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1238 TTAAAATCAAGAACAAATCAGAAGTTGACACGTCGACTATTCCGAAGAAGCTAATTGAAT 1297
Query 1309 ACCCTCCTGCTCATGTATCAACCTCCACACGTACACGTTACATTGCTATGTTCGAGTATG 1368
|||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1298 ACCCGCCTGCTAATGTATCAACCTCCTCACGTACACGTTACATTGCTATGTTCGAGTATG 1357
Query 1369 TGTCAAGCATTGACGAGCCAACACATCTATACATCAACGGTCT-GCCTTACAACGCTCCC 1427
|||| |||| |||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 1358 TGTCTAGCACTGACGAGCCAACACATCTATACATCAACGG-CTTGCCGTACAACGCTCCC 1416
Query 1428 GTAACCGAAACTCCAAAAATCGGCACAAGCGAGGTGTGGGAAGTGATAAACTTAACCGAG 1487
|| || ||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct 1417 GTGACAGAAACTCCAAAAATCGGCACAAGCGAGGTGTGGGAAGTGATTAATTTGACGGAG 1476
Query 1488 GATAACCATCCGTTGCACATTCACTTGGGATTGTTTAAAGTATTGGAGCAAACGGCATTG 1547
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1477 GATAACCATCCATTGCACATTCACTTGGGATTGTTCAAAGTATTGGAGCAAACGGCATTG 1536
Query 1548 GTGAAGAGTGAGGAGTTCATAGAGTGCATGACTAAAAGAAA-CGATGCCGTCAAGTGTGA 1606
||||| ||||||||||||||||| || ||||||||| |||| |||||||||||||||| |
Sbjct 1537 GTGAATAGTGAGGAGTTCATAGACTGTATGACTAAA-GAAAACGATGCCGTCAAGTGTCA 1595
Query 1607 GATTAGCAAATACGCACGAGGGAACAAGACCGCGGTTACGGTACACGAGCGGGGATGGAA 1666
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1596 GATTAGCAAATACGCACTAGGGAACAAGACCGCGGTGACGGTACACGAGCGGGGATGGAA 1655
Query 1667 AAACGTATTCAAGATGATGCCGGGACATGTAACGAAGATACTCGTTAGATTTTCTTACAT 1726
|||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||
Sbjct 1656 AAACGTATTCAAGATGATGCCGGGGCATGTCACGAAGATCCTCGTCAGATTTTCTTACAT 1715
Query 1727 TCACTCAAACGAATCTTACTCCTTTGACGCAACTCAAGAGCCAGGCTATGTTTACCACTG 1786
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1716 TCACTCGAACGAATCTTACTCCTTTGATGCAACTCAAGAGCCAGGCTATGTCTACCATTG 1775
Query 1787 TCACATATTGGACCATGAAGACAATATGATGATGAGGCCCTTTGCAATGGTGCTATAATT 1846
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1776 TCACATATTGGACCATGAAGACAATATGATGATGAGGCCCTTTGCAATGGTGCTATGATT 1835
Query 1847 CTAAAACGAAAACAATTTACAATTACGAGTGCAGAAT 1883
||||||| ||| ||| ||| |||||||||||||||||
Sbjct 1836 CTAAAACTAAA-CAACTTATAATTACGAGTGCAGAAT 1871
> Ahg472551 jgi|Araly1|472551|fgenesh2_kg.1__2505__AT1G23010.1
Length=2036
Score = 913 bits (494), Expect = 0.0
Identities = 1290/1663 (78%), Gaps = 99/1663 (6%)
Strand=Plus/Plus
Query 219 AAGCTTGAGATGTTCGTTGACAAGCTTCCTCATATACCAACACTTC-ATGGCTACCACTT 277
|||||| |||||||||| ||| | || || |||| || | || || |||||| || |
Sbjct 184 AAGCTTAAGATGTTCGTCGACGACCTCCCAGATATGCCTAGAC-TCTATGGCTTTAAC-T 241
Query 278 C-G-TCAATGGCT-TCCTCAAACCCAAATCTCTTCACATAGGCATGTTCTTCAAGAAATG 334
| | || || | | || ||||||||| |||||||| || |||||||||| || |||||
Sbjct 242 CTGTTC-AT-GATATCATCAAACCCACTTCTCTTCAAATCGGCATGTTCTCCACTAAATG 299
Query 335 GAAATTCCACAGAGACTTGCCTGCCACGCCAGTGTTCGCATATGGTACATCAAAGCGTTC 394
||||||||| ||||| |||||||| ||||| ||||| || ||||||||||| | | | |
Sbjct 300 GAAATTCCATAGAGATTTGCCTGCGACGCCTGTGTTTGCGTATGGTACATC-ACG-GAGC 357
Query 395 -A-GCAACAGTTCCTGGACCAACAATAGAAGCTGTTTATGGCGTCGACACCTACGTGACG 452
| ||||| |||||||| || || || |||||||||||||| || ||||| ||||| ||
Sbjct 358 AAGGCAACGGTTCCTGGTCCGACGATCGAAGCTGTTTATGGAGTAGACACATACGTTACA 417
Query 453 TGGCGAAATCACCTCCCTTTA-CATCATATCCTCCCTTGGGACCCAACAATCTCTCCGGC 511
|||||||||||||| |||| | | ||| ||||| ||||||||||| ||||| || || ||
Sbjct 418 TGGCGAAATCACCTTCCTTCATC-TCACATCCTTCCTTGGGACCCTACAATTTCCCCTGC 476
Query 512 AATC-CCTAAACACGGCGGCATTCCCACGGTGGTTCACTTGCACGGAGGTATCCACGAAC 570
|| | || |||||||| || ||||| ||||| |||||||| || || || ||||||||||
Sbjct 477 AA-CTCCAAAACACGGTGGAATTCCTACGGTTGTTCACTTACATGGTGGAATCCACGAAC 535
Query 571 CAACTAGCGATGGAAATGCAGATTCATGGTTCACCGCTGGTTTCAAAGAAACTGGTTCC- 629
|||| || ||||||||||| || |||||||||| || ||||| | ||| || || ||
Sbjct 536 CAACAAGTGATGGAAATGCCGACGCATGGTTCACTGCCGGTTTTAGAGAGACAGG-ACCA 594
Query 630 AAATGGACCAAAAAGAC-TACACATTACGTCAACAAGCAACAACCTGGAAACATGTGGTA 688
||||||||||||| ||| | ||||||| || |||||||||||||| |||||||||||
Sbjct 595 AAATGGACCAAAACGACGT-TGCATTACGAGAATAAGCAACAACCTGGTAACATGTGGTA 653
Query 689 CCATGACCACGCGGCA-GGG-TTGACCAGAGTCAACCTTCTTGCCGGTTT-GTTAGGCT- 744
||||||||| || || ||| |||||| |||||||||| || |||||||| ||| || |
Sbjct 654 CCATGACCATGC--CATGGGTTTGACCCGAGTCAACCTCCTCGCCGGTTTGGTT-GG-TG 709
Query 745 CTTACATTCTCCGTCA-TAGCTCAGTCGAATCGCCTCTT-CGGTTACCTACCGGACG-CG 801
| || ||||| || || | | | || ||||| || || | | |||| || || || |
Sbjct 710 CCTATATTCTTCGCCACCA-CGCCGTAGAATCTCC-GTTGCAGCTACCCACTGG-CGATG 766
Query 802 AATTCGATCGTCCTTTGGTCATCTTTGACCG-ATCTTTTCGTAAAGATGGTTCCATTTAC 860
||||||| || || ||| |||| ||||| || | | || |||||||| || || ||||||
Sbjct 767 AATTCGACCGACCGTTGATCATTTTTGATCGAAGC-TTCCGTAAAGACGGGTCAATTTAC 825
Query 861 ATGAACGCTACAGGGAACAATCCAACGATTCATCCACAATGGCAGCCAGAGTA-TTTCGG 919
|||||||| || |||||||| ||| ||||||| || |||||||| || || || ||| ||
Sbjct 826 ATGAACGCGACTGGGAACAACCCATCGATTCACCCGCAATGGCAACCGGAATACTTT-GG 884
Query 920 CGACGCCATCATTGTGAACGGTAAAGCATGGCCGA-GATTAACCGTCCGCCGCCGGAAAT 978
||| | || || || || || ||||||||||| | |||||| |||||| || ||||||
Sbjct 885 CGATGTGATAATCGTTAATGGAAAAGCATGGCC-ACGATTAAACGTCCGACGTAGGAAAT 943
Query 979 ATAGATTTCGAATCACAAACGCTAGTAACGCAAGGTTCTTCCGGTTCTTCTTCTCCAACG 1038
| ||||| || |||| |||||| || ||||| || || ||| || |||||||||||||
Sbjct 944 ACAGATTCCGTATCATAAACGCAAGCAACGCTAGATTTTTCAAATTTTTCTTCTCCAACG 1003
Query 1039 GTCTCGACTTCATTGTCGTTGGTTCCGATTCCGCTTATCTAG-CGAAACCAGT-ATCGAC 1096
|||| | ||||| || || ||||| ||||| || ||| | | | ||||| || || |||
Sbjct 1004 GTCTAAATTTCATCGTTGTGGGTTCTGATTCGGCGTAT-TTGTCAAAACCGGTGAT-GAC 1061
Query 1097 CAAATCTG-TTCTCCTAGCTCCGTCGGAGATTGTCGACGTAC-TCGTTGACTTT-TC-AA 1152
|||||| | ||||| || ||||||| || ||||| ||||| | ||||||| ||| || ||
Sbjct 1062 CAAATC-GATTCTCTTATCTCCGTCAGAAATTGTAGACGT-CATCGTTGA-TTTCTCGAA 1118
Query 1153 AGTCAACATCGAAAACGGCAATTCTTGCCAACAATGCACCTTATCCTTACCCGTCG-GGA 1211
| ||| |||||| ||| | | || || ||| | || || |||||||| || | | ||
Sbjct 1119 A-TCACCATCGAGAACCGTGGTACTCGCTAACGACGCGCCGTATCCTTATCC-TAGTGGT 1176
Query 1212 GATCCCGTC-ACGGAAGAGAACAGCAAAGTCATGAAGTTTATAATCAACTACAAATC-AG 1269
||||| ||| || ||||| || |||| || ||||| ||||| |||||| || || | ||
Sbjct 1177 GATCCGGTCAAC-GAAGAAAATGGCAAGGTAATGAAATTTATCATCAACAACGAA-CGAG 1234
Query 1270 AAGTTGACACGTCG-ATTATTCCGAAGAAGCTAATTGAA-TACCCTCCTGCTCA-TGTAT 1326
| | |||| | | | | ||||| |||||||| | | || ||||| | |||| | | | |
Sbjct 1235 AGGATGACTCAT-GTACAATTCCCAAGAAGCTCA-TCAACTACCCGCATGCTGACT-TGT 1291
Query 1327 CAACCTCCACACGTACA--CGTTACAT-TGCTATGTTCGAGTATGTG-TCAAGCAT-TGA 1381
||| | | || | || |||||||| | |||||| |||||| ||| ||| | | |||
Sbjct 1292 CAAACGCGGTAC-T-CAGGCGTTACATCT-CTATGTACGAGTACGTGAGCAA-C-TCTGA 1346
Query 1382 CGAGCCAACACATCTATAC-A-TCAACGGTC-TGCCTTACAACGCTCCCGTAACCGAAAC 1438
|| ||||| ||| | | | | ||||||| | | || || | ||||| || || |||||
Sbjct 1347 TGAACCAACTCAT-T-TGCTAGTCAACGG-CTTACCCTATGATGCTCCTGTCACAGAAAC 1403
Query 1439 TCCAAAAATC-GGCACAAGCGAGGTGTGGGAAGTGATAAACTTAACCGAGGATAACCATC 1497
||| |||||| || || | ||||| ||||||||||||||| || || |||||||||||||
Sbjct 1404 TCC-AAAATCAGGAACCACCGAGGCGTGGGAAGTGATAAATTTGACGGAGGATAACCATC 1462
Query 1498 CGTTGCACATTCACT-TGGGATTGTTTAAAGTATTGGAGCAAACGGCA-T--TGG-TG-A 1551
|||| |||||||| | | |||||||| ||||| | |||||||||||| | ||| |
Sbjct 1463 CGTTACACATTCA-TCTAGGATTGTTCAAAGTGGTAGAGCAAACGGCATTACTGGCGGCG 1521
Query 1552 AGAGT-GAGGAGTTCATA-GAGTGCATGACTAAA-AGAAACGATGCCGTCAAGTGTGAGA 1608
|| | |||||||||| | || || ||||| ||| | |||||| || |||||||| | |
Sbjct 1522 GGATTGGAGGAGTTCA-AGGAATGTATGACGAAACA-AAACGACGCGGTCAAGTGCCAAA 1579
Query 1609 TTAGCAAATACGCACGAGGGAACAAGACCGCGGTTACGGTACACGAGCGGGGATGGAAAA 1668
| ||||||||||| || ||||| ||||| || || |||| ||||||| |||| ||||| |
Sbjct 1580 TCAGCAAATACGCTCGTGGGAAAAAGACGGCAGTGACGGCACACGAGAGGGGTTGGAAGA 1639
Query 1669 ACGTATTCAAGATGATGCCGGGACATGTAACGAAGATACTCGTTAGATTTTCTTACATTC 1728
|||||||||||||||||||||||||||| |||| ||||||||| | ||||| || || |
Sbjct 1640 ACGTATTCAAGATGATGCCGGGACATGTTACGAGGATACTCGTCCGCTTTTCGTATATCC 1699
Query 1729 ACTCAAACGAATCTTACTCCTTT-GA-CGCAACTCAAGAGCCAGGCTATGTTTACCACTG 1786
|| | |||| ||| ||| || || || | | || | ||| || |||||||| ||||| ||
Sbjct 1700 ACACTAACGCATCGTAC-CCATTCGATC-CGACCCTAGAACCTGGCTATGTCTACCATTG 1757
Query 1787 TCACATATTGGACCATGAAGACAATATGATGATGAGGCC-CTT 1828
|||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1758 TCACATATTGGACCATGAGGACAATATGATGATGAGGCCGCTT 1800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78199272985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5