BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G71050.1

Length=974
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926449 jgi|Araly1|926449|scaffold_202010.1                        784    0.0  


> Ahg926449 jgi|Araly1|926449|scaffold_202010.1
Length=499

 Score =  784 bits (424),  Expect = 0.0
 Identities = 476/501 (95%), Gaps = 3/501 (1%)
 Strand=Plus/Plus

Query  327  TCTTGGTGAGAGTAATAGACATGGGAGCTCTTGATTCTCTTTCCGAGTATATCTCCGACT  386
            |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1    TCTTGGTGAGAGTAGTAGACATGGGTGCTCTTGATTCTCTTTCCGAGTATATCTCCGACT  60

Query  387  ACTTCCGCGTCACCAGAAAAAGGAGGAAGCGGAAAGTCATGCAGACGGTGAATATAAAGG  446
            ||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  61   ACTTCCGCGTCTCCAGAAATAGGAGGAAGCGTAAAGTCATGCAGACGGTGAATATAAAGG  120

Query  447  TGAAAATGGACTGCGATGGTTGTGAACGCAGAGTCAAGAACGCGGTTTCCTCCATGAAAG  506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TGAAAATGGACTGCGATGGTTGTGAACGCAGAGTCAAGAACGCGGTTTCCTCCATGAAAG  180

Query  507  GTGTGAAATCGGTGGAGGTGAATAGAAAGATACATAAAGTGACGGTGAGTGGATACGTGG  566
            | |||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  181  GGGTGAGATCGGTGGAGGTGAACAGAAAGATACACAAAGTGACGGTGAGTGGATACGTGG  240

Query  567  AACCAAAGAAGGTATTAAAGAGAATCGAAAGGACAGGGAAAAAAGCGGAGATATGGCCGT  626
            |||| |||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct  241  AACCGAAGAAGGTGTTAAAGAGAGTCGAAAGGACAGGGAAAAAGGCGGAGATATGGCCGT  300

Query  627  ACGTTCCTTACAACATGGTCGCATATCCATACGCGGTCGGAACTTACGACAAAAAAGCTC  686
            ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  301  ACGTTCCCTACAACATGGTCGCATATCCATACGCAGTCGGAACTTACGACAAAAAAGCTC  360

Query  687  CGGCCGGTTATGTCAGGAAATCTGAGCAGTCGCAGTTGCAGCTGTTGCCGGGAGCTCCCG  746
            | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  361  CTGCCGGTTATGTCAGGAAATCTGAGCAGTCGCAGTTGCAGCTATTGCCGGGAGCTCCCG  420

Query  747  A-GAACCACTACATTTCTCTTTTTAGCGACGAGAATCCCAACGCTTGCACCGTTATGTAA  805
            | || | ||| | |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  421  ACGA-CAACTTCGTTTCTCTTTTTAGCGACGAGAATCCCAACGCTTGTACCGTTATGTAA  479

Query  806  TAAATAATTTACTCTAGTAGT  826
            ||| || ||||||||||||||
Sbjct  480  TAA-TAGTTTACTCTAGTAGT  499



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36178648233


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5