BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71060.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476238 jgi|Araly1|476238|fgenesh2_kg.2__1368__AT1G71060.1 2294 0.0
> Ahg476238 jgi|Araly1|476238|fgenesh2_kg.2__1368__AT1G71060.1
Length=1539
Score = 2294 bits (1242), Expect = 0.0
Identities = 1449/1547 (94%), Gaps = 22/1547 (1%)
Strand=Plus/Plus
Query 1 ATGGTCTTCTCTCGATTCTTCAGAGT-CACCGGAGTGAATCTCTCTCGACGTGTGTACTC 59
||||||||||||||||||||||| | | ||||||||||||||||||| ||||| ||||
Sbjct 1 ATGGTCTTCTCTCGATTCTTCAG-CTCCGCCGGAGTGAATCTCTCTCGCCGTGTCTACT- 58
Query 60 T-CGAATCTCTTCGTCTTCG---TC-A-C-CGAGTCTCGAATCGATTCCATGGATTCATA 112
| |||||||||| |||||| || | | |||||||||||||||||||||||||||||
Sbjct 59 TAAGAATCTCTTCTTCTTCGTCCTCAAGCTTGAGTCTCGAATCGATTCCATGGATTCATA 118
Query 113 AAGCTTCAAACTTTACACTTTACGGATCATTTCACGCTTCTTCTGTTGAAACCCAAGTTT 172
|||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 119 AAGCTTCAAATTTTACAGTTTATGGATCATTTCACGCTTCTTCTGTTGAAACCCAAGTTT 178
Query 173 CTGCTAATGATGCTTCACAAGACGCAGAGAGAATCTGCAAGATTCTCACCAAATTCACGG 232
|||||||||||| |||||||||||| || | ||||||||| ||||| ||||||| || |
Sbjct 179 CTGCTAATGATGTTTCACAAGACGCTGATAAAATCTGCAATATTCTGTCCAAATTTACAG 238
Query 233 ATTCAAAGGTTGAAACTTTGCTGAACGAAGCTTCTGTTAAACTTTCACCAG-CCTTAATC 291
||||||||||||||||||||||||||||||||||||||||||| || || | | |||||
Sbjct 239 ATTCAAAGGTTGAAACTTTGCTGAACGAAGCTTCTGTTAAACTCTCGCCGGTAC-TAATC 297
Query 292 GAAGAAGTACTGAAGAAGCTAAGCAACGCTGGTGTTTTAGCTTTGTCTGTATTCAAATGG 351
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 298 GAAGAAGTACTGAAGAAGCTAAGCAACGCTGGGGTTTTAGCTTTATCTGTATTCAAATGG 357
Query 352 GCAGAGAATCAAAAGGGTTTCAAGCACACTACTTCAAACTACAACGCATTGATCGAATCA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GCAGAGAATCAAAAGGGTTTCAAGCACACTACTTCAAACTACAACGCATTGATCGAATCA 417
Query 412 TTAGGTAAGATCAAACAATTCAAACTCATTTGGAGT-TTAGTAGACGACATGAAAGCAAA 470
|||||||||||||| ||||||||||||||||||| | || ||||||||||||||| ||||
Sbjct 418 TTAGGTAAGATCAAGCAATTCAAACTCATTTGGAATCTT-GTAGACGACATGAAA-CAAA 475
Query 471 A-AAGCTTTTGAGCAAAGAGACATTTGCTCTTATCTCTAGACGTTACGCTAGAGCTAGGA 529
| ||||||||||||||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 476 AGAAGCTTTTGAGCAAAGACACGTTTGCTCTCATTTCTAGACGTTACGCTAGAGCTAGGA 535
Query 530 AAGTTAAAGAAGCTATAGGTGCGTTTCATAAGATGGAAGAGTT-TGGGTTTAAGATGGAA 588
| |||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct 536 AGGTTAAAGAAGCTATAGCTGCGTTTCATAAGATGGAAGA-TTATGGGTTTAAGATGGAA 594
Query 589 TCAAGTGATTTTAATCGTATGCTTGATACTTTGAGCAAATCTAGAAATGTTGGGGATGCA 648
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 595 TCAAGTGATTTCAATCGTATGCTTGATACTTTGAGCAAATCTAGAAATGTTGGAGATGCA 654
Query 649 CAGAAGGTGTTCGATAAAATGAAAAAGAAAAGGTTTGAGCCTGATATTAAGTCTTATACT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CAGAAGGTGTTCGATAAAATGAAAAAGAAAAGGTTTGAGCCTGATATTAAGTCTTATACT 714
Query 709 ATTCTACTTGAAGGTTGGGGTCAGGAGTTGAATCTTTTGAGAGTTGATGAGGTTAACAGA 768
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 715 ATTTTACTTGAAGGTTGGGGTCAGGAGTTGAATCTTTTGAGAGTTAATGAGGTTTATAGA 774
Query 769 GAGATGAAAGACGAAGGTTTTGAACCGGATGTTGTCGCTTACGGTATTATTATCAATGCG 828
|||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct 775 GAGATGAAAGACGAAGGTTTTGAACCGGATGTGGTTGCGTACGGTATCATTATCAATGCG 834
Query 829 CATTGCAAGGCGAAGAAGTATGAAGAAGCTATTAGATTCTTCAATGAGATGGAACAGAGG 888
|||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 835 CATTGCAAGGCGAAAAAGTATGATGAAGCTGTTAGATTCTTCAATGAGATGGAACAGAGG 894
Query 889 AATTGTAAGCCAAGTCCTCACATTTTCTGTAGTTTGATTAATGGACTTGGCTCTGAGAAG 948
||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 895 AATTGTAAGCCGAGTCCTCACATTTTCTGTAGTCTGATTAATGGACTGGGCTCTGAGAAG 954
Query 949 AAGTTGAATGATGCTCTTGAGTTCTTTGAGAGATCAAAGAGTTCCGGGTTTCCTCTTGAA 1008
||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 955 AAGCTGAATGATGCTCTTGAATTCTTCGAGAGATCAAAGAGTTCCGGGTTTCCTCTTGAA 1014
Query 1009 GCACCTACTTACAATGCGCTAGTAGGTGCTTATTGCTGGTCACAGCGAATGGAAGACGCA 1068
|| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1015 GCTCCTACTTACAATGCACTAGTAGGAGCTTATTGCTGGTCACAGCGAATAGAAGACGCA 1074
Query 1069 TACAAAACCGTTGATGAGATGAGATTAAAAGGGGTTGGGCCAAATGCTAGAACTTATGAT 1128
| |||||||| ||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 1075 TTTAAAACCGTGGATGAGATGAGATCGAAAGGGATTGGCCCAAATGCTAGAACTTATGAT 1134
Query 1129 ATAATTCTTCATCATTTGATTAGAATGCAGCGCTCGAAAGAAGCGTATGAAGTTTATCAG 1188
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1135 ATAATTCTTCATCATTTGATTAGAATGCAGCGCACAAAAGAAGCCTATGAAGTTTATCAG 1194
Query 1189 ACGATGAGTTGTGAACCGACGGTGAGTACTTACGAGATCATGGTGAGGATGTTTTGTAAC 1248
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1195 AAGATGAGTTGTGAACCGACGGTGAGTACTTACGAGATCATGGTGAGGATGTTTTGCAAC 1254
Query 1249 AAAGAGAGATTGGATATGGCGATCAAGATTTGGGACGAGATGAAAGG-GAAAGGTGTTCT 1307
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1255 AAAGAGAGATTGGATATGGCGATCAAGATTTGGGACGAGATGAAAGGAGAA-GGTGTTCT 1313
Query 1308 TCCAGGAATGCACATGTTCTCAAGTTTGATCACAGCTCTGTGCCATGAGAACAAATTAGA 1367
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TCCGGGAATGCACATGTTCTCAAGTTTGATCACAGCTCTGTGCCATGAGAACAAATTAGA 1373
Query 1368 CGAGGCTTGTGAGTATTTCAATGAGATGTTGGATGTGGGTATTAGGCCACCGGGACATAT 1427
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1374 CGAAGCTTGTGAGTATTTCAATGAAATGTTGGATGTGGGTATTAGGCCACCGGGACAAAT 1433
Query 1428 GTTTAGCCGTCTTAAACAAACACTTCTCGATGAAGGCCGGAAAGATAAAGTCA-CGGATT 1486
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 1434 GTTTAGCCGTCTTAAACAAACGCTTCTCGATGAAGGCCGGAAAGATAAAGT-AGCGGATT 1492
Query 1487 TGGTTGTAAAGATGGATAGGCTGAGGAAAACCCAACTTGTTGGCTGA 1533
| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TAGCTGTGAAGATGGATAGGCTGAGGAAAACCCAACTTGTTGGCTGA 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5