BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71070.1
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476239 jgi|Araly1|476239|fgenesh2_kg.2__1369__AT1G71070.1 2534 0.0
> Ahg476239 jgi|Araly1|476239|fgenesh2_kg.2__1369__AT1G71070.1
Length=1707
Score = 2534 bits (1372), Expect = 0.0
Identities = 1608/1719 (94%), Gaps = 28/1719 (2%)
Strand=Plus/Plus
Query 15 CGGAGATCGAAGTTTTGAACCTAAGAATCTCGTTGTCTTCTTCTTCTGCAGAGCCTCCAA 74
||||||||||||||||| |||| |||| ||||||||||||||| | | || |||||||||
Sbjct 1 CGGAGATCGAAGTTTTGTACCTGAGAACCTCGTTGTCTTCTTC-T-T-CAAAGCCTCCAA 57
Query 75 AGTCTAAATC-TTTTGGTTACGTCTCTCAAACCCCAACCTTTA-TACTCACTCTCTTTCT 132
|||| ||||| ||||||||||||||||||||||| || ||||| | |||||||||| |||
Sbjct 58 AGTCCAAATCTTTTTGGTTACGTCTCTCAAACCCTAATCTTTATTTCTCACTCTCTCTCT 117
Query 133 TTTTCTCT-C-TTACCTCCATTGGCTTCTTCTTGAGATCTCGTCAGGCTCTGATCCCAAT 190
|||| | || | ||||||||||||||||||||||| || |||||||||||||||
Sbjct 118 CCCACTCTCCATT--TTTCATTGGCTTCTTCTTGAGATCTCCTCGGGCTCTGATCCCAAT 175
Query 191 CTATGTTCGATCTCACTCTCACCGAGATCTCATCTTCCTCCATTTTTTCAAAGATCCATA 250
||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 176 CTATGCTCGATCTCACTCACACCGAGATCTCATCTTCCTCCA-TATTTCAAAGATCCATA 234
Query 251 TATGAGCTCTAAAACCACAGATTTCAATCTGTGAATCCGTATATATGCTCAATCGGAGCC 310
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 235 TATGAGCTCTAAAACCACAGATTTGAATCTGTGAATCCACATATATGCTCAATCGGAGCC 294
Query 311 AGATTCTAACAAATCAAA---GAAAGGAAG-AAGAAGTGAAGAACAATGGGAGCTGAAAA 366
|||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 295 AGATTCTAACAAATCAAAGGTGAAA-GAAGAAAGAAGTGAAGAACAATGGGAGCTGAAAA 353
Query 367 GAAATGGCTTTTCACACTCTTCTCTGTAGTATTCCTCTCAGTGTTCCTTCTCTTACTTTA 426
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 354 GAAATGGCTTTTCACTCTCTTCTCTGTAGTATTTCTCTCAGTGTTCCTTCTCTTACTTTA 413
Query 427 TTCTATCTCTGCTTTCACCTCTAAACCATTCCCTTCTTCAATTCGTCACGGTGCTCATTA 486
|| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 414 CTCAATCTCTGCTTTTACCTCTAAACCATTCCCTTCTTCAATCCGTCACGGTGCTCATTA 473
Query 487 CCCACCTGCTTTTGCTTATTACATAACCGGTGGTCGTGGAGATAATGACCGGATCTCTCG 546
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 474 CCCACCAGCTTTCGCTTATTACATAACCGGTGGTCGTGGAGATAATGACCGGATCTTTCG 533
Query 547 GTTATTGCTTGCGGTTTATCATCCTAGGAATCGGTATCTTATCCATCTGGGTGCTGAAGC 606
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 534 TTTATTGCTCGCGGTTTATCATCCTAGGAATCGGTATCTTCTCCATCTGGGTGCTGAATC 593
Query 607 TACTGATGCAGAGAGGCTAGCTCTTCTCTCTGATTTGAAATCTGTTCCTGCTGTGAATGC 666
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 594 TACTGATGCTGAGAGGCTTGCTCTTCTCTCGGATTTGAAATCTGTTCCTGCTGTGAATGC 653
Query 667 TTTTGGGAATGTTGATGTTTTAGGGAAAGTTGATCGTTTGTCTGAGAATGGTGCTTCTAA 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TTTTGGGAATGTTGATGTTTTAGGGAAAGTTGATCGTTTGTCTGAGAATGGTGCTTCTAA 713
Query 727 GATTGCTTCTACTCTTCACGCTGTTTCTATTCTTCTTAAGCTTGATCCTACTTGGAATTG 786
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 714 GATTGCTTCTACTCTTCACGCTGTTTCTATTCTTCTTAAGCTTGATCGTACTTGGAATTG 773
Query 787 GTTTATTGAGCTTAGTGCTTTGGATTATCCTCTCATAACTCAAGATGACCTATCTCATGT 846
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 774 GTTTATTGAGCTTAGTGCTTTGGATTATCCTCTCATTACTCAAGATGACCTATCTCATGT 833
Query 847 GTTTGCCTCGGTGAACAGAAGTCTCAATTTTATTGATCACACTAGTGACCTTGCTTGGAA 906
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 834 GTTTGCCTCAGTGAACAGAAGCCTCAATTTTATTGATCACACTAGTGACCTTGCTTGGAA 893
Query 907 AGAATCTCAGAGAATCAAGCCTATTGTTGTTGATCCAGCACTTTACTTAGCTAGAAGAAC 966
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AGAGTCTCAGAGAATCAAGCCTATTGTTGTTGATCCAGCACTTTACTTAGCTAGAAGAAC 953
Query 967 TCAGCTCTTCACTGCTACCGA-AAAGCGACCAACACCAGATGCATTCAAAGTCTTTACAG 1025
|||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 954 TCAGCTATTCACTGCTACCGAGAAA-CGACCAACACCAGATGCATTCAAAGTCTTTACAG 1012
Query 1026 GCTCGCCTTGGATTGTACTAAGCAGACCTTTCCTAGAATACTGCATCTTCGGTTGGGATA 1085
||||||||||||||||||| || ||| |||||||||||||||||||| |||||||||| |
Sbjct 1013 GCTCGCCTTGGATTGTACTGAGTAGATCTTTCCTAGAATACTGCATCCTCGGTTGGGACA 1072
Query 1086 ATTTACCAAGAATCCTTCTCATGTATTTTAACAATGTCATTCTCTCTGAAGAATGCTACT 1145
||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1073 ATTTACCGAGAGTCCTTCTGATGTATTTTAACAATGTCATTCTCTCTGAAGAATGCTATT 1132
Query 1146 TCCACACGGTGATATGCAACGCACCGGAGTTCAGTAACACGACAGTCAACGGGGACTTAC 1205
||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1133 TCCACACAGTGATATGCAACGCACCCGAGTTCAGTAACACGCCAGTCAACGGGGACTTAC 1192
Query 1206 GATACATGATATGGGACAGTCCACCAAAAATGGAACCACATTTCCTTACTATATCGGATT 1265
|||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||
Sbjct 1193 GATACATGATATGGGACAGTCCACCAAAGATGGAACCACACTTCCTTACTGTATCAGATT 1252
Query 1266 TCGA-CCAAATGGCTCAAAGCGGAGCAGCTTTCGCTAGACAATTCAAGAAAGATGATCCA 1324
|||| |||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1253 TCGAACCAA-TGGCTCAAAGCGGAGCAGCTTTCGCCAGACAGTTCAAGAAAGACGATCCA 1311
Query 1325 GTACTCGACATGGTCGATAGAGAGATCCTGAAACGTGGACGTTACAGAGTCACTCCTGGC 1384
|||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 1312 GTACTCGACATGGTCGATAGAGAGATCCTGAAACGTGGGCGTTACCGTGTCACTCCTGGA 1371
Query 1385 GCTTGGTGCTCGAGCCACAGTAGCTGGTGGACAGATCCTTGCTCGGAGTGGGATGAAGTA 1444
||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 1372 GCTTGGTGCTCGAGCCACAATAGCTGGTGGACAGATCCTTGCTCAGAATGGGATGAAGTC 1431
Query 1445 AACATTGTCAAAGCTGGACCTCAAGCTAAGAAGCTAGACGAAACAATAACGAATTTTCTT 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 AACATTGTCAAAGCTGGACCTCAAGCTAAGAAGCTAGACGAAACAATAACGAATTTTCTT 1491
Query 1505 GATGATTTGAATTCACAATCGAATCAATGCAAGTGATTATACGACACACGAGAC-----T 1559
||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1492 GATGATTTGAATTCACAATCGAATCAATGCAAGTGATTATACGACACACGACACGAGAAT 1551
Query 1560 ACATTGTTTTCAGTCTCTGTAAGGTTAAATTCTTTGGGCAACAACACAGTGGCTGCTGTA 1619
||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1552 ACACTGTTTTCAGTCTCTGTAAGGTTAA-TTCTTTGGGCAACAACACAGTGGCTGATGTA 1610
Query 1620 TTTATACGAGGAGAAGGAGAAAGAGAAGAGAAAGGAGATATTTTTATTCTCTTTCCCAGA 1679
||||||| ||| ||||||| | ||||| |||||||||| |||||| || ||||||| |||
Sbjct 1611 TTTATACAAGGGGAAGGAGCA-GAGAATAGAAAGGAGAGATTTTTTTTATCTTTCCTAGA 1669
Query 1680 TTTTGTAATTCCTTTGTTAAAGCCA-TTAGAGAACTTTT 1717
||||||||||||||||||||||||| || ||||||||||
Sbjct 1670 TTTTGTAATTCCTTTGTTAAAGCCACTT-GAGAACTTTT 1707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67267372670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5