BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71080.1
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476240 jgi|Araly1|476240|fgenesh2_kg.2__1370__AT1G71080.1 1832 0.0
Ahg337082 jgi|Araly1|337082|fgenesh1_pg.C_scaffold_1003647 409 3e-113
> Ahg476240 jgi|Araly1|476240|fgenesh2_kg.2__1370__AT1G71080.1
Length=1281
Score = 1832 bits (992), Expect = 0.0
Identities = 1203/1299 (93%), Gaps = 38/1299 (3%)
Strand=Plus/Plus
Query 12 AAAATTCTGATCTCGGATTCGTCTTCTCTGCCCTAAAAGAAAAACCCTACGTGAGCTGCG 71
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AAATTTCTGATCTCGGATTCGTCTTCTCTGCCCT-AAAGAAAAACCCTACGTGAGCTGCG 59
Query 72 TCAGTTCTGGGTCCTCCGCAATTTGAGAATCGGAGATATCTCAAGTTTCGC-AAAGTCTC 130
|||||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||||
Sbjct 60 TCAGTTCTGGGTCCTCCGCAATTTGAGAATCGGAGAGACCTCAAGTTTCGCGAAA-TCTC 118
Query 131 G-T--G--GATTTGATCTTCGTC-TCCTTGATCGATGGATTCACCTTGAGCAATCGTTGA 184
| | | ||||||||||||||| ||| ||||||||||||||||||||| |||||||| |
Sbjct 119 GTTGCGTCGATTTGATCTTCGTCTTCC-TGATCGATGGATTCACCTTGATCAATCGTTAA 177
Query 185 TCGAGCTTCGAAGATGTCGAATCACTCCAGAGATGAGCCTAGTACTGCCCCGAAGACAGA 244
||||||||||||||||||||||||||||| |||||| || ||||| ||||||||||||||
Sbjct 178 TCGAGCTTCGAAGATGTCGAATCACTCCATAGATGAACCCAGTACCGCCCCGAAGACAGA 237
Query 245 TCAATGGTATGATCTTGTCCTTGGTTCCTCTGCCAAAGATGACTCCTCCCATAAATTCTG 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 238 TCAATGGTATGATCTTGTCCTTGGTTCCTCTGCCAAAGATGATTCCTCCCATAAATTCTG 297
Query 305 CACTTTGCGATATGAATTTAAGCCGGCTTCAATCGATAAGAACAGGTCAGGATCAATGCA 364
|||||||||||||||||| |||||||||||||| |||||||||||||||||| || ||||
Sbjct 298 CACTTTGCGATATGAATTCAAGCCGGCTTCAATAGATAAGAACAGGTCAGGAACACTGCA 357
Query 365 CAAGAAGAAGGATAACAGAGTTTCAGTTGAGTTTCAGAATAACCAACCA-GGTAAACCCA 423
|||||||||||||||||||||||| | ||| ||||||||||||||| || ||||||||||
Sbjct 358 CAAGAAGAAGGATAACAGAGTTTCTGCTGAATTTCAGAATAACCAA-CATGGTAAACCCA 416
Query 424 AGGTGACATTTGAAGGTAGTAGTGAGGATTACAAAGAA-AGCGATGCGGTGTTGTTTTTC 482
| |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 417 AAGTGACATTTGAAGGTAGTAGCGAGGATTACAAAGAACA-CGATGCGGTGTTGTTTTTC 475
Query 483 GATGGGGAGAAGTTTCGTTTAGAGAGGTTGCATCGGGCTGTTACGCAGCTGCGACATGTT 542
|||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||
Sbjct 476 GATGGGGAGAAGTTTCGTTTGGAGAGGTTGCATCGAGCTGTGAAGCAGCTGCGACATCTT 535
Query 543 AGGACACCTGGTGAATCTGCTGCGG---CTTCTCAATCTGCGGTGCCTGTGGAGC---AT 596
|||||||| |||||||||||||||| ||||||| ||||| |||||||||||| ||
Sbjct 536 AGGACACCAGGTGAATCTGCTGCGGCTTCTTCTCAGGCTGCGATGCCTGTGGAGCATAAT 595
Query 597 CGGTTATCTCCTGTTGGTCGTGCTGCTAAATCTCCACAAGTCAATAGAAGTTTGCTTCCT 656
|| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 596 CGATTATCTCCTGTTGATCGTGCTGCTAAATCTCCACAAGTGAATAGAAGTTTGCTTCCA 655
Query 657 GATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAGCTGAACCT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAGCTGAACCT 715
Query 717 GCCAACACTGGAAACGTGCCTGCAACCTCACCAGTCGAGGACAAGAACGATGATGGAGAT 776
|||| | |||||||||| |||| |||||||||| || |||||||||||||||||||||
Sbjct 716 GCCATCGCTGGAAACGTATCTGCTGCCTCACCAGTTGATGACAAGAACGATGATGGAGAT 775
Query 777 GAGCATCAAGAGATCGATCTGGTTGAAATATTTGGCTCATTTACACCAGAGAACGACAAT 836
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GAACATCACGAGATTGATCTGGTTGAAATATTTGGCTCATTTACACCAGAGAACGACAAT 835
Query 837 GCAGAGAAAGAGAACGCTGATGGTGGAGAATATGTAGAAAGCTTAAATAAACAGCTTAGC 896
|||||||||||||| ||||| |||||||| || || ||||||||||| ||||||||||||
Sbjct 836 GCAGAGAAAGAGAATGCTGACGGTGGAGAGTACGTCGAAAGCTTAAACAAACAGCTTAGC 895
Query 897 ATGACGGAAGAAGAGATTGCAGATGTAGATGACGATAGCGGCGGTGAAGGAGAAAAAGGT 956
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 896 ATCACGGAAGAAGAGATTGCAGATGTAGATGACGATAGCGGTGGTGAAGGAGAAAAAGGT 955
Query 957 CTTAACGCAGCAGAAGCACTTAGAGCACAAGTGAACGCAGAGGTGCAAAAGAGTCAAACC 1016
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CTAAATGCAGCAGAAGCACTTAGAGCACAAGTGAACGCAGAGGTGCAAAAGAGTCAAACC 1015
Query 1017 TCAAGCTCAAGCAGTAGCAGTGGAAGTAGCAGCGGAAGTGACAGTGATGGTCGTAGCAAA 1076
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1016 TCAAGCTCAAGCAGTAGCAGTGGAAGCAGCAGCGGAAGTGACAGTGATGGTCGTAGCAAA 1075
Query 1077 AGCGTAAGCAGCGGAAGTGGCAGCGGCGGCCAAAGCAGTAGTGGAAGCAGTAGCCGTGGA 1136
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 1076 AGCGTAAGCAGCGGAAGTGGCAGCGGCGGGCAAAGCAGCAGCGGAAGCAGTAGCCGTGGA 1135
Query 1137 AGTGGAGGAAGTGACGATGAAGATGAAGTCAACTCCGTATAACAA-CCAGCTCCCAACAA 1195
||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1136 AGTGGAGGAAGCGACGATGAAGATGAAGTCAACTCCGTATAACAAACCAGCTCC-AACAA 1194
Query 1196 CTTTGT--CAAACAATATTTCCATATTTGAGACACTT-TGTCTGAATAATTTGGTTGAAG 1252
|||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1195 CTTTGTATCAAACAATATTTCCATATTTGAGACACTTGTGTCTGAATAATT--------- 1245
Query 1253 AATCCAAAAGGGTAAAAA-TTTATGTTTTACTACGAAAG 1290
||||||||||||||| ||||||||||||||||||||
Sbjct 1246 ---CCAAAAGGGTAAAAAATTTATGTTTTACTACGAAAG 1281
> Ahg337082 jgi|Araly1|337082|fgenesh1_pg.C_scaffold_1003647
Length=435
Score = 409 bits (221), Expect = 3e-113
Identities = 269/291 (92%), Gaps = 8/291 (3%)
Strand=Plus/Plus
Query 425 GGTGACATTTGAAGGTAGTAGTGAGGATTACAAAGAA-AGCGATGCGGTGTTGTTTTTCG 483
||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct 141 GGTGACATTTGAAGGTAGTAGCGAGGATTACAAAGAACA-CGATGCGGTGTTGTTTTTCG 199
Query 484 ATGGGGAGAAGTTTCGTTTAGAGAGGTTGCATCGGGCTGTTACGCAGCTGCGACATGTTA 543
||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||| |||
Sbjct 200 ATGGGGAGAAGTTTCGTTTGGAGAGGTTGCATCGAGCTGTGAAGCAGCTGCGACATCTTA 259
Query 544 GGACACCTGGTGAATCTGCTGCGG---CTTCTCAATCTGCGGTGCCTGTGGAGC---ATC 597
||||||| |||||||||||||||| ||||||| ||||| |||||||||||| |||
Sbjct 260 GGACACCAGGTGAATCTGCTGCGGCTTCTTCTCAGGCTGCGATGCCTGTGGAGCATAATC 319
Query 598 GGTTATCTCCTGTTGGTCGTGCTGCTAAATCTCCACAAGTCAATAGAAGTTTGCTTCCTG 657
| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 320 GATTATCTCCTGTTGATCGTGCTGCTAAATCTCCACAAGTGAATAGAAGTTTGCTTCCAG 379
Query 658 ATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAG 708
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAG 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49521669183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5