BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71090.1
Length=1919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476241 jgi|Araly1|476241|fgenesh2_kg.2__1371__AT1G71090.1 2680 0.0
> Ahg476241 jgi|Araly1|476241|fgenesh2_kg.2__1371__AT1G71090.1
Length=1890
Score = 2680 bits (1451), Expect = 0.0
Identities = 1775/1926 (92%), Gaps = 43/1926 (2%)
Strand=Plus/Plus
Query 1 AAGAAGAAACTTCAAGATACAAAATTATTGCAATCAGTAGA-TTTGGCGTGGATGATGCA 59
||||||||||||||||| || |||||||||||||||||| | ||||||||||||||| ||
Sbjct 1 AAGAAGAAACTTCAAGAAACCAAATTATTGCAATCAGTAAATTTTGGCGTGGATGATACA 60
Query 60 TCTGTCATCGCAATCTTGTCTTCTTCTTCATTGACAAGTTCCATGTGTATTGTGTAGCTC 119
|||||| | ||||||||||| ||||||||||||||||||||||||| |||||||| ||||
Sbjct 61 TCTGTCCTTGCAATCTTGTCGTCTTCTTCATTGACAAGTTCCATGTATATTGTGTCGCTC 120
Query 120 CAGGTGTTGTTCTCTAATCGGCTTTATCTCTATCCAACCATCTTCACGACTGTGGTCTAA 179
|||||||| |||||| |||||||||||||||| ||| | |||||| || ||||||||||
Sbjct 121 CAGGTGTTCTTCTCTCATCGGCTTTATCTCTACCCAGCAATCTTCTTGATTGTGGTCTAA 180
Query 180 TTGATTTGTTAGTGTTCTTCTATTTCCTGGTTCAGATTCTTCACTGCTGTGTATAGTTCT 239
| |||| || ||||||||||| || ||| | |||||| ||||||||||||||||||| |
Sbjct 181 TCAATTT-TTGGTGTTCTTCTACTTGCTGATCCAGATTTTTCACTGCTGTGTATAGTT-T 238
Query 240 -TCTCATTCAATTACTTGGGTTGTGGTTTAAATCACCAATTTGGTCATCTTCTTGTGttt 298
| |||||||||| ||||||||||||||||||||||||||||||||| || || ||| |
Sbjct 239 GTGTCATTCAATTGCTTGGGTTGTGGTTTAAATCACCAATTTGGTCA--TTGTT-TGTGT 295
Query 299 ttttCTATCGTTGACTTCGAGCTTTACATAGTGAGATCGAGATGTCAGGTTTCTCCAGTG 358
||||||||||||||||||||| |||||| |||||||| | ||||||||||||||| |||
Sbjct 296 TTTTCTATCGTTGACTTCGAGGTTTACACAGTGAGATTAATATGTCAGGTTTCTCCGGTG 355
Query 359 GAAATGTTAATTCTAGGGTTGTGGATATACTCAGTGGTGTTGTGCCTTTGTTGAAGCTTA 418
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 356 GAAATGTTAATTCTAGGGTTGTGGATATTCTCAGTGATGTTGTGCCTTTGTTGAAGCTTA 415
Query 419 TCTGTTTAACCGTGATTGGTCTACTTCTTGCTCATCCCAAGACTCAATTAGTCCCAAGAG 478
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 416 TCTGTTTAACCGTGATTGGTCTGCTTCTTGCTCATCCCAAGACTCAATTAGTCCCAAGAG 475
Query 479 CCACGTTTAGGCTCTTAAGCAAGCTTGTGTTTGCTTTGTTCTTACCTTGTTTGATTTTCA 538
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 476 CCACGTTTAGGCTCTTAAGCAAGCTTGTGTTTGCTTTGTTCTTGCCTTGTTTGATTTTCA 535
Query 539 CTGAGCTTGGAGAAAGCATTACTCTTGATAACATTGTTCAATGGTGGTTTATACCGGTCA 598
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 536 CTGAGCTTGGAGAAAGCATTACTCTTGAGAACATTGTTCAATGGTGGTTTATACCGGTCA 595
Query 599 ACGTGTTACTCAGTGCGGTCGTTGGGTCCTTGATAGGATACTTGGTAGTCCTCATATGCA 658
||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 596 ACGTGTTACTCAGTGTGGTCGTTGGGTCTTTGATAGGATACTTGGTTGTTCTCATATGCA 655
Query 659 GACCACCTCCTGAGTTTAATAGATTCACCATTGTTATGACTGCTTTTGGAAATACTGGGA 718
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GGCCTCCTCCAGAGTTTAATAGATTCACCATTGTTATGACTGCTTTTGGAAATACTGGGA 715
Query 719 ATCTTTTGTTAGCTATTGTTAGCTCGGTGTGTCACACGAAGACGAACCCTTTTGGACCGA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 716 ATCTTTTGTTAGCTATTGTTAGCTCGGTGTGTCACACGAAGACGAACCCTTTTGGGCCGA 775
Query 779 ATTGTAACTCGAGAGGGGTTTCGTATGTATCGTTTGCGCAATGGGTTGCTGTGATTCTTG 838
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GTTGTAATTCGAGAGGAGTTTCGTATGTATCGTTTGCGCAATGGGTTGCTGTGATTCTTG 835
Query 839 TTTATACTGTTGTGTATCATATGATGGAGCCGCCTTTGGAGTACTATGAGGTCGTTGAGG 898
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 836 TTTATACTGTTGTGTATCATATGATGGAGCCGCCTTTGGAGTACTATGAGGTTGTTGAGG 895
Query 899 AAGAAGGGGTTGAGATAGAGG-AGATCAATGTGGAGAATCATGATGCTAGTAGGCCTCTT 957
|||||||| |||||||||||| || |||||||||| |||||||||| ||||||||| |||
Sbjct 896 AAGAAGGGATTGAGATAGAGGAAG-TCAATGTGGATAATCATGATGTTAGTAGGCCACTT 954
Query 958 CTAGTGGAAGCTGAGTGGCCAGGGATTGAGGACAAAGAGACAGAACATTGCAAGACACCT 1017
||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 955 CTAGTGGTAGCTGAATGGCCAGGGATTGAGGACAAAGAGACCGAACATTGTAAGACCCCG 1014
Query 1018 TTTATTGCTAGAGTCTTCAACAGCATATCTAGTTTCTCTCAGACTTCTTTTCCTGAAGTT 1077
|| ||||| || ||||||||||||||||| ||| |||| ||| ||||||| |||||||||
Sbjct 1015 TTCATTGCCAGGGTCTTCAACAGCATATCAAGTGTCTCCCAGGCTTCTTTGCCTGAAGTT 1074
Query 1078 GATCTCGGGGGAGAATATGGAGGAGAGAGTTCCAGCCCTAGGTCTATTCAATGCTTGGCT 1137
||| ||||||||||| ||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 1075 GATTTCGGGGGAGAAAATGGAGGAGAGAGTTCCAGTCCTAGATCTATTCAGTGCTTGGCT 1134
Query 1138 GAGCCTAGAGTAATGAGGAGAATAAGAGTTGTGGCTGAACAGACTCCAGTCAAACACATA 1197
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1135 GAGCCGAGAGTAATGAGGAGAATGAGAGTTGTGGCTGAACAGACTCCAGTCAAACACATA 1194
Query 1198 CTTCAACCTCCAACAATCGCATCTCTATTAGCGATCATTATCGGATCAGTGCCTCAGCTG 1257
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1195 CTCCAACCTCCAACAATCGCATCTCTATTAGCGATGATTATCGGATCAGTGCCTCAGCTG 1254
Query 1258 AAAAGTGTTGTCTTTGGGTATGATGCTCCGCTTTCTTTCATCACAGATAGTTTGAATATA 1317
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1255 AAAAGTGTTGTCTTTGGGTATGATGCACCACTTTCTTTCATCACAGATAGTTTGAATATA 1314
Query 1318 ATGGGAAGTGCAATGGTTCCCTCTGTGATGCTTGTACTTGGTGGTATGCTCTCTGAAGGA 1377
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1315 ATGGGAAGCGCAATGGTTCCCTCTGTGATGCTTGTCCTAGGTGGTATGCTCTCTGAAGGA 1374
Query 1378 CCAAATGAATCAACTCTTGGGTTACGTACTACGATTGGAATAAGTGTTGCAAGACTCTTG 1437
|||||||||||||||||||| |||||||| ||||| || |||||||||||||||||| ||
Sbjct 1375 CCAAATGAATCAACTCTTGGCTTACGTACAACGATCGGGATAAGTGTTGCAAGACTCCTG 1434
Query 1438 GTGCTTCCGTTAGTGGGAATAGGGATTGTGATGTCAGCTGATAAACTTGGTCTCATTTCC 1497
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GTTCTTCCTTTAGTGGGAATAGGGATTGTGATGTCAGCTGATAAACTTGGTCTCATTTCC 1494
Query 1498 TCAGCAGATCCAATGTTCAAGTTTGTGCTTCTTTTGCAGTATTCGACTCCGAGTGCCATT 1557
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1495 TCAGCAGATCCAATGTTCAAGTTTGTGCTTCTTCTGCAGTATTCAACTCCGAGTGCCATT 1554
Query 1558 TTACTTGGAGCCATCGCGAGTCTAAGAGGTTACGCTGTTAGAGAAGCCTCGGCACTTCTA 1617
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1555 TTACTTGGAGCCATCGCGAGTCTAAGAGGTTACGCCGTTAGAGAAGCCTCAGCACTTCTA 1614
Query 1618 TTCTGGCAACACATCTTTGCACTGTTGTCTCTTACGTTCTACATTGTCATCTTCTTCAAA 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TTCTGGCAACACATCTTTGCACTGTTGTCTCTTACGTTCTACATTGTCATCTTCTTCAAA 1674
Query 1678 CTCACCGTTGAGACTACTGTCCAAGGTATGCAATAAATCTAAAGT-T--AAATGTCAACT 1734
||||||||||||| ||||||||||||||||| |||||||| ||| | ||| | |||
Sbjct 1675 CTCACCGTTGAGAATACTGTCCAAGGTATGCCATAAATCT-GAGTATAAAAAAG-AAAC- 1731
Query 1735 TTGTTTGTAAAGAATGTGATGTTATCAAATACATTGAACTTCAATGGTGTGTGTTGGTGA 1794
|||||||||||||||||||||||||| ||||||||||| ||||| | || | ||
Sbjct 1732 TTGTTTGTAAAGAATGTGATGTTATC-AATACATTGAATTTCAA-----T-TG-T-GT-- 1780
Query 1795 GTGTTGGTGGAGTATTACCAATTCAAAGTTTAAGAAGTTTTGTACCAA-AAGTGGCATGA 1853
|||||||| ||| | || | | | ||||||||||||| || ||||||||
Sbjct 1781 GTGTTGGT-GAG---T----GTT----G-GT--GGAGTTTTGTACCAACAA-TGGCATGA 1824
Query 1854 ACCGTGCACTTGCTTGATCTTATTTCGTGGCCTAAATCATCTTTTAAATAGAGCATCATC 1913
||||||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 1825 ACCGTGCACTTGCATGATCTTATTTCCTGGCGTAAATAATCTTTTAAATAGAGCATCATC 1884
Query 1914 GTATTC 1919
||||||
Sbjct 1885 GTATTC 1890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72104833785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5