BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71100.1
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926455 jgi|Araly1|926455|scaffold_202016.1 1321 0.0
> Ahg926455 jgi|Araly1|926455|scaffold_202016.1
Length=846
Score = 1321 bits (715), Expect = 0.0
Identities = 803/845 (95%), Gaps = 8/845 (1%)
Strand=Plus/Plus
Query 74 TCACAAAGCAAGTCGCGTACAATGGGTTCTGCATTCGATCCCCTTGTCACGGCCACTGAG 133
|||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1 TCACAAAGCAAGCCGCGTACAATGGGTTCTGCTTTCGATCCCTTTGTCACGGCCACTGAG 60
Query 134 GA-TCTCGCCGCCGTCAACTCGGCGCCGCCACTCTCAAACCTCACG-CAAGAAGAACTCA 191
|| || ||||| |||||||||| || |||| ||||||||||||| | |||||||||||||
Sbjct 61 GATTC-CGCCGTCGTCAACTCGCCGGCGCCTCTCTCAAACCTCA-GTCAAGAAGAACTCA 118
Query 192 AGAAAATCGCCGCTTATAAAGCCGTCGAATTCGTCGAATCTGGAATGGTTATCGGTCTCG 251
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 119 AGAAAATCGCCGCTTATAAAGCCGTCGAATTCGTCGAATCTGGAATGGTCATCGGTCTCG 178
Query 252 GCACTGGCTCCACCGCGAAACACGCCGTGGCTCGTATCAGCGAGCTTCTCCGAGAAGGAA 311
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 179 GCACTGGCTCCACCGCTAAACACGCCGTGGCTCGTATCAGCGAGCTTCTCCAAGAAGGAA 238
Query 312 AACTCAAGGATATAATCGGAATCCCTACTTCAACCACAACGCATGAGCAAGCGGTGTCTC 371
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 AACTCAAGGATATAATCGGAATCCCGACTTCAACCACAACGCATGAGCAAGCGGTGTCTC 298
Query 372 TAGGGATACCATTATCCGATCTAGATTCGCATCCGGTGGTGGATCTATCAATCGATGGCG 431
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TAGGGATACCGTTATCCGATCTAGATTCGCATCCGGTGGTGGATCTATCAATCGATGGCG 358
Query 432 CCGACGAAGTCGATCCGGCTCTTAATCTGGTGAAAGGACGCGGCGGATCGTTATTGAGAG 491
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 359 CCGACGAAGTCGATCCGGCTCTCAATCTGGTGAAAGGACGCGGCGGATCGTTATTGAGGG 418
Query 492 AGAAGATGATTGAAGGAGCATCTAAGAAGTTCGTTGTGATTGTTGATGAATCGAAGCTTG 551
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 AGAAGATGATAGAAGGAGCATCTAAAAAGTTCGTTGTGATTGTTGATGAATCGAAGCTTG 478
Query 552 TCAAGTATATCGGAGGAAGCGGACTCGCTGTTCCGGTGGAGGTTGTTCCGTTCTGCTGCG 611
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGAAGTATATCGGAGGAAGCGGACTCGCTGTTCCGGTGGAGGTTGTTCCGTTCTGCTGCG 538
Query 612 ATTTCACAAGGGGGAAACTGGAAGAGCTATTT-AGAGATTCGGGATGTGTTGCGAAGCTG 670
|||||||| |||||||| |||||||||| ||| ||||| |||||||| |||||||||||
Sbjct 539 ATTTCACACGGGGGAAATTGGAAGAGCT-TTTCAGAGAATCGGGATGCGTTGCGAAGCTT 597
Query 671 AGGATGAAAATCGGATCTAACGGCGAAGAGGCGGCGCCGGCTGTGACGGATAATAGGAA- 729
|||||||| |||||||||||||||| ||| ||| |||||||||||||||||||| ||||
Sbjct 598 AGGATGAAGATCGGATCTAACGGCGGAGATGCGACGCCGGCTGTGACGGATAAT-GGAAA 656
Query 730 TTATGTGGTGGATTTGTATTTGGAGAGAGATATTGGAGATTTAGAGGTGGCGAGTGAGGC 789
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 657 TTATGTGGTGGATTTGTATTTGGAGAGAGATATTGGAGATTTAGAGGCGGCGAGTGAGAA 716
Query 790 GATATTGAGGTTTCCTGGAGTAGTGGAGCATGGGATGTTTCTGGGAATGGCGACTACGTT 849
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 717 GATATTGAGGTTTCCTGGAGTAGTGGAGCATGGGATGTTTCTGGGAATGGCGACGACGTT 776
Query 850 GATCGTCGCCGGCAAATTTGGTGTTACCGTCAAGGATAGGTTTGGATAAAAGTGTCATTT 909
|||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 777 GATCGTCGCCGGGAAATTCGGTGTAACCGTCAAGGATAGGTTTGGATAAAAGAGTCATTT 836
Query 910 GAAAA 914
|||||
Sbjct 837 GAAAA 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38694760755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5