BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71110.1
Length=1987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476243 jgi|Araly1|476243|fgenesh2_kg.2__1373__AT1G71110.1 2900 0.0
Ahg887802 jgi|Araly1|887802|Al_scaffold_0123_3 333 3e-90
Ahg930632 jgi|Araly1|930632|scaffold_303089.1 237 2e-61
> Ahg476243 jgi|Araly1|476243|fgenesh2_kg.2__1373__AT1G71110.1
Length=1961
Score = 2900 bits (1570), Expect = 0.0
Identities = 1852/1985 (93%), Gaps = 31/1985 (2%)
Strand=Plus/Plus
Query 10 CTCTCTTCCTCACCTGCGTTTTCGTGGAGCATCTTCTTCAACAATGGCTGCTTCTCCGAT 69
|||||||||||||| |||||||| ||| | | || |||||||||| ||||||||||
Sbjct 1 CTCTCTTCCTCACCCGCGTTTTC---GAG---C-T-TT-AACAATGGCTTCTTCTCCGAT 51
Query 70 CTGATCATATCCTGATTTGA-ATTT--T-GCTATCTCTCATGCCTCGAACTCGTTTTGTC 125
|||| ||| ||||||||||| ||| | || |||||||||||||||||||| | |
Sbjct 52 CTGACCATTTCCTGATTTGATTTTTACTCTCTCTCTCTCATGCCTCGAACTCG---T-T- 106
Query 126 GACGTAGCATCCTAGTGACTGAGGAAGAAGAAGAAGATGAGCTTCTTTATCCTCTCCGTC 185
| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 107 ----T--CATCC-AGTGACTGAGGAAGAAGAAGAAGATGAACTTCTTTATCCTCTCCGTC 159
Query 186 GTCGTTTTCGTTTCTCTCGCTTTCTTCTCTCTTCCGCATTCCGTTGATTCATCTGTTTCC 245
|||||||||||| || |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 160 GTCGTTTTCGTTGCTTTCGCTTTCTTTTCTCTTCCGCATTCCGTTGATTCATCTGTTGCC 219
Query 246 GCTTCACAGGATCCTCTCAGACTCATATTAGGTTCACCGAATTTTGGAACATGGAAAGGT 305
|||||||| |||||||||| |||||||||||| ||||||||||||||| |||||||||||
Sbjct 220 GCTTCACAAGATCCTCTCAAACTCATATTAGGCTCACCGAATTTTGGATCATGGAAAGGT 279
Query 306 GGAATCTCATTAGCACCAGGACCTGAATCTGATGATGTTGTCTCTGATTACCTCCTCTTA 365
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 280 GGAATCTCATTAGCACCAGGACCTTCATCTGATGATGTCGTCTCTGATTACCTCCTCTTA 339
Query 366 GCAGCTCATAGAACCAAGAGACCTGACATTCTTAGAGCTTTTAAGCCTTACCATGGTGGC 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 340 GCAGCTCATAGAACCAAGAGACCTGACATTCTTAGAGCTTTTAAGCCTTACCATGGCGGT 399
Query 426 TGGAACATCACCAATAATCACTATTGGGCTTCTGTTGGATTTACAGGTGCTCCTGGTTTC 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 TGGAACATCACCAATAATCACTATTGGGCTTCTGTTGGATTTACAGGTGCTCCTGGTTTC 459
Query 486 ATACTAGCTGTTATCTGGCTCTTGTCTTTTGGCTCTCTTCTTGTTGTTTATCATTGCTTC 545
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 460 ATTCTAGCTGTTATCTGGCTCTTGTCTTTTGGCTCTCTTCTTGTTGTGTATCATTGCTTC 519
Query 546 AAATGGAGAATATGTGATAAAGCTAAAGGATCATCATTCGATACACGAAGAATCTGTTTC 605
||||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 520 AAATGGAGACTATGTGTTAAAGCTAAAGGATCATCATTCGATTCACGAAGATTCTGTTTC 579
Query 606 ATTTTGTTGATTGTGTTTACATGTGTTGCAGCGGTGGGATGCATTCTTTTATCTGTTGGA 665
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 580 ATTTTGTTGATAGTGTTTACGTGTGTTGCAGCGGTGGGATGCATTCTTTTATCTGTTGGA 639
Query 666 CAAGATAAGTTTCATACCGAAGCTATGCATACTCTTAAGTATGTTGTAAACCAGTCAGAC 725
|| |||||||||||||| |||||||||| ||||||||||||||| || |||||||| |||
Sbjct 640 CAGGATAAGTTTCATACTGAAGCTATGCGTACTCTTAAGTATGTGGTTAACCAGTCTGAC 699
Query 726 TACACTGTGGAGATCCTCCAGAATGTGACTCAATATCTGTCCCTTGCGAAAACGATTAAC 785
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 700 TACACTGTGGAGATCCTCCAGAATGTGACTCAATATCTGTCCCTCGCAAAAACGATTAAT 759
Query 786 GTGACACAGATTGTC-ATTCCGTCTGATGTAATGGGTGAAATTGACAAGTTAAATGTCAA 844
|||||| ||||| || |||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 760 GTGACAGAGATT-TCCATTCCGCCAAATGTAATGGATGAAATTGACAAGTTAAATGTCAA 818
Query 845 TCTTAACACTGCAGCTGTAACACTGGGAGAGACAACAACAGATAACGCTGCTAAAATTAA 904
||| ||||||||||| |||||| ||||||||| |||| ||||||| |||||||| |||||
Sbjct 819 TCTGAACACTGCAGCAGTAACATTGGGAGAGAAAACACCAGATAATGCTGCTAAGATTAA 878
Query 905 GAGAGTTTTCTATGCTGTGCGATCAGCTTTGATCACGGTCGCTACTGTGATGCTCATCCT 964
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GAGAGTTGTCTATGCTGTGCGATCAGCTTTGATCACGGTCGCTACTGTGATGCTCATCCT 938
Query 965 TTCTTTTGTAGGTCTATTGCTTTCTGTCCTCCGCCACCAACATGTTGTTCATATATTCGT 1024
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 TTCTTTTGTTGGTCTATTGCTTTCTGTCCTCCGCCACCAACATGTTGTTCATATATTCGT 998
Query 1025 CGTGAGTGGGTGGATACTTGTGGCTGTGACATTTGTTCTTTGTGGAGTCTTTCTGATCCT 1084
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 999 CGTGAGTGGGTGGATACTGGTGGCTGTGACATTTGTTCTCTGTGGAGTCTTTCTGATCCT 1058
Query 1085 AAACAATGCAATTTCTGATACGTGTGTAGCAATGAAGGAATGGGTTGATAATCCTCACGC 1144
||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1059 AAACAATGCAATTTCAGATACGTGTGTAGCCATGAAGGAATGGGTTGATCATCCTCACGC 1118
Query 1145 AGAAACAGCTCTCAGCAGCATTCTCCCATGCGTTGATCAGCAAACAACAAACCAGACTCT 1204
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1119 AGAAACAGCTCTCAGCAGCATCCTCCCATGCGTTGATCAGCAAACAACCAACCAGACTCT 1178
Query 1205 TTCACAGAGTAAAGTTGTTATCAACAGCATCGTGACCGTTGTAAACACCTTTGTCTATGC 1264
| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 1179 TGCACAGAGTAAAGTTGTCATCAACAGTATCGTGACCGTTGTAAACACCTTTGTTTATGC 1238
Query 1265 TGTTGCCAATACAAACCCAGCTCCAGGTCAAGACCGCTATTACAACCAGTCTGGACCTCC 1324
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 TGTTGCCAATACAAACCCATCTCCAGGTCAAGACCGCTATTACAACCAGTCTGGACCTCC 1298
Query 1325 GATGCCTCCTTTATGCATCCCATTTGATGCAAACATGGAAGATCGCCAGTGCTCGCCTTG 1384
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GATGCCTCCTTTGTGCATCCCATTTGATGCAAACATGGAAGATCGCCAGTGCTCGCCTTG 1358
Query 1385 GGAACTATCAATAGAAAATGCATCATCGGTCTGGGAGAATTACAAATGCGAGGTTACACC 1444
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GGAATTGTCAATAGAAAATGCATCATCGGTCTGGGAGAATTACAAATGCGAGGTTACACA 1418
Query 1445 ATCTGGAATCTGCACCACCGTGGGGAGAGTAACGCCAGATACCTTTGGACAGTTGGTAGC 1504
||| ||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1419 ATCCGGAGTCTGCACCACTGTGGGGAGAGTAACGCCAGACACCTTTGGACAGTTGGTAGC 1478
Query 1505 AGCTGTGAATGAGAGCTACGCTCTAGAGCATTACACGCCTCCATTGCTTAGCTTCCGAGA 1564
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1479 AGCTGTGAATGAGAGCTACGCTCTTGAGCATTACACGCCTCCGTTGCTTAGCTTCCGAGA 1538
Query 1565 TTGCAACTTTGTTAGGGAAACATTTATGAGTATTACCTCAGATTACTGTCCACCGTTAGT 1624
|||||| ||||||||||||||||||| |||||| |||||||||||||||||||| | |
Sbjct 1539 TTGCAATTTTGTTAGGGAAACATTTAAGAGTATCACCTCAGATTACTGTCCACCACTGG- 1597
Query 1625 A-CGTAATCTGAGGATTGTGAACGCAGGACTCGGACTGATCTCCGTAGGAGTCTTACTAT 1683
| ||||||||||||||||||| ||||||||| || |||||||| || ||||| |||||||
Sbjct 1598 AGCGTAATCTGAGGATTGTGACCGCAGGACTTGGCCTGATCTCTGTGGGAGTGTTACTAT 1657
Query 1684 GTCTGGTGCTATGGATATTCTATGCGAACCGCCCCCAAAGGGAGGAAGTGTTTGCGGATC 1743
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 GTCTGGTGCTGTGGATATTCTATGCGAACCGCCCCCAAAGGGAGGAAGTGTTTGCGGATC 1717
Query 1744 CACACCCTCAAAG-AAAAGATGATAGCTTTGGTAACGGCTTGGATACTCATCACTCAGAT 1802
||||||||||| | |||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 1718 CACACCCTCAA-GTAAAAGACGTTAGCTTTGGTAACGGCTTGGATAATCATCACTCAGAT 1776
Query 1803 GACGAACCTAAGCTTTCTGTAGAATGCGTATAGTATAGAGGTATAGTTAGATAGAATCAG 1862
|||||| |||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 1777 GACGAAACTAAGCTTTCTGTAGAATGCGTATAGTATACAGGTATAGATAAATAGAATCAG 1836
Query 1863 ATATTGTATTTCATAATGATATGAAAGAGAACAATAAAAACATTTTGTAGCGTTCATGTT 1922
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1837 ATGTTGTATTTCATAAAGATATGAAAGAGAACAATAAACACATTTTGTAGCGTTCATGTT 1896
Query 1923 ACAGTAGAAGAGGAAGAAGAGACCAGAAGTGGAGCGAAGTTTCACTTTCTGGCTTTTGTT 1982
||| ||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1897 ACATTAGAAGAAGAGGAAGAGACTAGAAGTGGAGCAAAGTTTCACTTTCTGGCTTTTGTT 1956
Query 1983 TTCAC 1987
|||||
Sbjct 1957 TTCAC 1961
> Ahg887802 jgi|Araly1|887802|Al_scaffold_0123_3
Length=351
Score = 333 bits (180), Expect = 3e-90
Identities = 215/231 (93%), Gaps = 5/231 (2%)
Strand=Plus/Plus
Query 279 TCACCGAATTTTGGAA-CATGGAAAGGTGGAATCTCATTAGCACCAGGACCTGAATCTGA 337
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 49 TCACCGAATTTT-GAATCATGGAAAGGTGGAATCTCATTAGCACCAGGACCT---TCAGC 104
Query 338 TGATGTTGTCTCTGATTACCTCCTCTTAGCAGCTCATAGAACCAAGAGACCTGACATTCT 397
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 105 TGATGATGTCTCTGATTACCTCGTCTTAGCAGCTCATAGAACCAAGAGACCTGACATTCT 164
Query 398 TAGAGCTTTTAAGCCTTACCATGGTGGCTGGAACATCACCAATAATCACTATTGGGCTTC 457
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 165 TAGAGCTTTTAAGCCTTACCATGGCGGCTGGAACATCACCAATAATCATTATTGGGCTTC 224
Query 458 TGTTGGATTTACAGGTGCTCCTGGTTTCATACTAGCTGTTATCTGGCTCTT 508
||||||||| |||||| ||||||||||||| ||||||| ||| ||||||||
Sbjct 225 TGTTGGATTCACAGGTACTCCTGGTTTCATTCTAGCTGCTATTTGGCTCTT 275
> Ahg930632 jgi|Araly1|930632|scaffold_303089.1
Length=420
Score = 237 bits (128), Expect = 2e-61
Identities = 150/160 (94%), Gaps = 4/160 (3%)
Strand=Plus/Plus
Query 300 AAAGGTGGAATCTCATTAGCACCAGGACCTGAATCTGATGATGTTGTCTCTGATTACCTC 359
|||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||
Sbjct 59 AAAGGTGGAATCTCATTAGCACCAGGACCT---TCAGCTGATGATGTCTCTGATTACCTC 115
Query 360 CTCTTAGCAGCTCATAGAACCAAGAGACCTGACATTCTTAGAGCTTTTAAGCCTTACCAT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 GTCTTAGCAGCTCATAGAACCAAGAGACCTGACATTCTTAGAGCTTTTAAGCCTTACCAT 175
Query 420 GGTGGCTGGAACATCACCAATAATCACTATTGGGCTTCTG 459
|| ||||||||||||||||||||||| ||||||||| |||
Sbjct 176 GGCGGCTGGAACATCACCAATAATCATTATTGGGCT-CTG 214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74694970445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5