BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71120.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476244 jgi|Araly1|476244|fgenesh2_kg.2__1374__AT1G71120.1 1679 0.0
> Ahg476244 jgi|Araly1|476244|fgenesh2_kg.2__1374__AT1G71120.1
Length=1086
Score = 1679 bits (909), Expect = 0.0
Identities = 1025/1083 (95%), Gaps = 0/1083 (0%)
Strand=Plus/Plus
Query 7 TCTTCTTCTTCAATGGACTTACTCATGTGTCTGCTTCTTCTAATCTCTCCGGTTGTTCTG 66
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 4 TCTTCTTCTTCAATGGACTTACTCATGTTTCTGCTTCTTCTAGTCTCTCCGGTTGCTCTG 63
Query 67 GCCAAGTCTTCTTCCACCGTCCCTGCTATCTTTACCTTCGGTGACTCTATTTTTGACGCC 126
|| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||
Sbjct 64 GCAAAGTCTTCTTCCACCGTCCCTGCTATCTTCACCTTTGGTGACTCAATTTTCGACGCC 123
Query 127 GGAAACAACCATTACAACAAAAACTGTACCGCTCAGGCTGATTTTCCTCCTTATGGTTCT 186
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 124 GGAAACAACCATTACAACAAAAACTGTACAGCTCAGGCTGATTTTCCTCCTTATGGTTCT 183
Query 187 TCCTTTTTCCACCGTCCTACTGGGAGGTTCACCAACGGAAGAACCGTCGCTGACTTCATC 246
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 184 TCCTTTTTCCACCGTCCTACGGGGAGGTTCACCAACGGAAGAACTGTCGCTGACTTCATC 243
Query 247 TCGGAATTTGTAGGCCTTCCATTACAGAAACCATTCTTGGAATTGCAGATTCAAATCTTG 306
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 244 TCGCAATTTGTAGGCCTTCCACTACAGAAACCATTCTTGGAATTGCAGATTCAAATCTTG 303
Query 307 AATGGAACTTCAAACTTTTCAAATGGCATTAACTTTGCTAGTGCTGGTAGTGGTCTCTTG 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AATGGAACTTCAAACTTTTCAAATGGCATTAACTTTGCTAGTGCTGGTAGTGGTCTCTTG 363
Query 367 CTTGATACCAACAAATTTATGGGCGTGACACCGATCCAAACCCAGCTACAGCAATTCCAG 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTTGATACCAACAAATTTATGGGCGTGACACCGATCCAAACCCAGCTACAGCAATTCCAG 423
Query 427 ACACTTGTAGAGCAAAACCTTATCGAAAAATCTATAATCCAAGAGTCTCTCTTCTTATTA 486
||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 424 ACACTTGCAGAGCAGAACCTGATCGAAAAATCTATAATCCAAGAGTCTCTCTTCTTATTG 483
Query 487 GAAACTGGTTCTAACGACATCTTCAACTACTTCCTCCCATTCCGAGCTCCTACACTTTCT 546
||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 484 GAAACTGGTTCCAACGACATCTTCAACTACTTCATCCCATTCCAAACTCCTACACTTTCT 543
Query 547 CCAGACGCTTATGTGAACGCAATGTTAGACCAAGTGAACAAAACGATTGATCAGATCTAC 606
|||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 544 CCAGACGCCTATGTGAACACAATGTTAGACCAAGTGAGCAAAACGATTGATCAGATCTAC 603
Query 607 AAACTAGGCGCACGCCGCATCGCTTTCTTCTCCTTAGGTCCTGTAGGTTGTGTCCCTGCA 666
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 604 AAACTAGGTGCACGCCGCATCGCTTTCTTCTCCTTAGGTCCTGTGGGATGTGTCCCTGCA 663
Query 667 AGAGCCATGCTTCCTAATGCCCCAACCAATAAATGCTTTGGTAAGATGAATGTTATGGCC 726
|||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||
Sbjct 664 AGAGAAATGCTTCCTAATGTCCCAACAAATAAATGCTTCGGTAAGATGAATGTTATGGCA 723
Query 727 AAGATGTATAATAAAAGACTTGAAGATATAGTGAACATAATCCCCACTAAGTACCCTGGA 786
||||| | ||||| |||||||||||| || ||||||||||| |||||||||||||| ||
Sbjct 724 AAGATTTTTAATACAAGACTTGAAGAGATTGTGAACATAATACCCACTAAGTACCCCGGT 783
Query 787 GCCATTGCGGTGTTTGGAGCTGTATATGGTATCACTCACAGATTTCAAACCTACCCTGCC 846
||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||
Sbjct 784 GCCATTGCGGTGTTTGGAGCTGTGTATGGTATAACTCACAGATTCCAAACCAACCCTGCC 843
Query 847 CGTTACGGGTTTTCGGATGTTTCAAACGCGTGTTGTGGGAACGGTACACTGGGAGGATTG 906
|||||||||||| | ||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 844 CGTTACGGGTTTACCGATGTGTCGAACGCGTGTTGTGGGAACGGGACACTGGGAGGATTG 903
Query 907 ATGCAGTGTGGAAGAGAAGGATACAAGATTTGCAATAACCCAAATGAGTTTCTGTTTTGG 966
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 904 ATGCAGTGTGGAAGAGAAGGATACAAGATTTGCAATAACCCAAATGAGTTTTTGTTTTGG 963
Query 967 GATTTTTATCATCCCACAGAACACACTTACCGTCTCATGTCAAAAGCTTTATGGAATGGA 1026
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 964 GATTTTTATCATCCCACAGAACGCACTTACCATCTCATGTCAAAAGCTTTATGGAACGGA 1023
Query 1027 AACAAAAACCATATCAGACCATTTAATCTCATGGCTCTTGCCACCAACAAGATCACATTT 1086
|||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||
Sbjct 1024 AACAAAAACCATATCAGACCGTTTAATCTCATGGCTCTTGCCACCACCAACATCACATTT 1083
Query 1087 TAA 1089
|||
Sbjct 1084 TAA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5