BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71130.1
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476245 jgi|Araly1|476245|fgenesh2_kg.2__1375__AT1G71130.1 739 0.0
> Ahg476245 jgi|Araly1|476245|fgenesh2_kg.2__1375__AT1G71130.1
Length=582
Score = 739 bits (400), Expect = 0.0
Identities = 542/606 (89%), Gaps = 27/606 (4%)
Strand=Plus/Plus
Query 1 ATTCTGAAAGAATAAAAACATATTCTTTCTCTCAAATGCTTTCC-TTTTA-ATGGAGACG 58
||||||||||||||||||||||||| ||||| ||||||| |||| ||||| | |||||||
Sbjct 1 ATTCTGAAAGAATAAAAACATATTC-TTCTCCCAAATGCCTTCCTTTTTAGA-GGAGACG 58
Query 59 AAGACGGAACCCTAATTTCCGCAAATTCACTATGAAGCGTATTATCAGAATCTCATTCAC 118
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 59 GAGACGAAACCCTAATTTCCTCAAATTCACTATGAAGCGTATTATCAGAATCTCATTCAC 118
Query 119 CGACGCAGAAGCCACCGATTCTTCTAGCGACGAAGACACGGAGGAGCGTGGAGGAGCATC 178
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 119 CGACGCAGAAGCCACCGATTCTTCTAGCGACGAAGACACGGAGGAACGTGAAGGAGCTTC 178
Query 179 CCAGACTCGGCGCCGTGGGAAACGCCTCGTTAAAGAGATCGTAATCGATCCTTCCGATTC 238
||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 179 CCAGACTCGCCGCCGTGGGAAACGCCTCGTTAAAGAGATCGTAATTGA----TCC--TT- 231
Query 239 CGCCGATAAACTCGATGTCTGCAAAACACGGTTCAAAATCAGGATCCCGGCGGAATTTCT 298
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 232 --CCGATAAACTCGATGTCTGCAAGACACGGTTCAAAATCAGGATTCCGGCGGAATTTCT 289
Query 299 CAAGACGGCGAAAACGGAGAAGAAATAT-CGTGGAGTGAGGCAGAGGCCGTGGGGGAAGT 357
|||||||||| || ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 290 CAAGACGGCG---TCGAAGAAGAAAT-TCCGTGGAGTGAGGCAGAGGCCGTGGGGGAAGT 345
Query 358 GGGTGGCGGAGATCAGATGTGGAAGAGGAGCTTGTAAAGGACGACGTGATCGTCTCTGGC 417
||||||||||||| |||||||| ||||||||||||| |||||||||| |||||| ||||
Sbjct 346 GGGTGGCGGAGATTAGATGTGGCGGAGGAGCTTGTAAGGGACGACGTGGTCGTCTTTGGC 405
Query 418 TGGGTACTTTTAACACTGCTGAGGAAGCTGCTCTAGCTTATGATAACGCTTCAATTAAGC 477
|||| |||||||||||||| |||||||||||||| |||||||||||||| | ||| |||
Sbjct 406 TGGGAACTTTTAACACTGCCGAGGAAGCTGCTCTTGCTTATGATAACGCCGCGATTCAGC 465
Query 478 TGATTGGACCTCACGCGCCGACCAATTTTGGTTTGCCGGCGGAGAATCAAGAGGATAAGA 537
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 466 TGATTGGACCTCACGCGCCGACCAATTTCGGTTTTCCGGCGGAGAATCATGAGGATAAGA 525
Query 538 CGGTGATTGGAGCTTCTGAGGTTGCTAGAGGCGCGTGAAGTGGGGTTGGTAATTTAGTTG 597
||||| | ||| | | ||||| |||||||||||||||| |||||| || ||||
Sbjct 526 CGGTGGT-GGA--T---G---TTGCTCGAGGCGCGTGAAGTGGAGTTGGTGGTTCAGTTC 576
Query 598 TTAGCA 603
||||||
Sbjct 577 TTAGCA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27372254406
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5