BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71150.1
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476247 jgi|Araly1|476247|fgenesh2_kg.2__1377__AT1G71150.1 1493 0.0
> Ahg476247 jgi|Araly1|476247|fgenesh2_kg.2__1377__AT1G71150.1
Length=1156
Score = 1493 bits (808), Expect = 0.0
Identities = 1054/1166 (90%), Gaps = 44/1166 (4%)
Strand=Plus/Plus
Query 10 GACTTGAGGCGTCGAGAGGTGAAGGAAGACGGAGATGGCGAAACCAAACATAGACGAATT 69
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 GACTTGAGGCGTCGAGAGGTGAAGGAAGACGGAGATGGCGAAACCAAAAAGAGACGAATT 60
Query 70 GAATCAAATCCTTACTAGTTATCAAAACACCATCAACGATACTCTCCAGTTGTTCGAGCA 129
|||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 61 GAATCAAATCCTTACTAGTTATCACAATACCATCAATGATACTCTCCAGTTGTTTGAGCA 120
Query 130 AGTTCCGTCTCCGACACAAGACAAATTATA-TTGGAACGATGTCCTTCAGATTTCTGATC 188
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 121 AGTTCCGTCTCCGACACAAGACAAATTA-AGCTGGAACGATGTCCTTCAGATTTCTGATC 179
Query 189 ATCTCTCCAAACAAGCTACTATAGTGGGAATGCTATGGATCACTGGAGAACCTCCAAAAG 248
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 180 ATCTCTCCAAACAAGCTACTATAGTGGGAATGCTATGGA-C--TGGAGAACCTCCAAAAT 236
Query 249 CTGAAGCAATGAAGGAGACTATGGAAG-CATACTTCAACGCT-CTTCAAGGATTTTTGCT 306
|||||||| | ||||| |||||||| | |||||||||||| | ||||||||||||||| |
Sbjct 237 CTGAAGCACTAAAGGAAACTATGGA-GTCATACTTCAACG-TGCTTCAAGGATTTTTGTT 294
Query 307 GCATTGTCATGGAAGCATGGTTGGTGCTGGGACTACACTCTCTTCGA-CCATACACGCTT 365
|||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||| |
Sbjct 295 ACATTGTCATGGAAGCATGGTTGGTGCCGGGACTACACTTTCTTC-ATCCATACACGCCT 353
Query 366 CTGTGAAGCAAATTGTTGATTCCAGCTTCAGATTGTTGCAGGGTTCTGTTTCCTTATACG 425
||| |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 354 CTGCGAAGCAAATTGTTGATTCTAGCTTCAGATTGTTGCAGGGTTCTGTGTCCCTATACG 413
Query 426 AGGGATCATATGAGAAAGGAAGGAAGCCCACGATTCCGCAGCTTGCAGGAGCAGTGTGGG 485
|||||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct 414 AGGGATCATATGGGAATGGAAGGAAGCCGTCGATTCCGCAGCTTGCTGGAGCAGTGTGGG 473
Query 486 AAGCATGTTCTAATTTAAAGAACGTGCCTGAAACAAACATCAAAGCGATTGGAAGAGCGA 545
||||||| || ||||||||||| |||||||||||||||||||||||||||| ||| ||||
Sbjct 474 AAGCATGCTCCAATTTAAAGAAGGTGCCTGAAACAAACATCAAAGCGATTGTAAGGGCGA 533
Query 546 TGGCACATGTAGCTGTTTCTATGAAGGATGTGCTTAGGGAGATGAAAGAACTGAAGCCTG 605
| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 534 TTGCACATGTAGCTGTTTCCATGAAGGATGTTCTTAGGGAGATGAAAGAACTGAAGCCAG 593
Query 606 CTTCTTCTTCACCTGATCATAATG-TT-T-----C--G-A---C-A-A---A---CTCGG 644
||| ||||||||| || ||| ||| || | | | | | | | | ||| |
Sbjct 594 CTTGTTCTTCACCCGAGCATGATGCTTCTGAAAACCTGGAAAGCGAGACTCAAAACTCAG 653
Query 645 ATGACGATGAT--T--T--AGGCGATGAACT-GTCTCCTGAAGAATTTGAAGTTGCTAAA 697
|||| |||||| | | ||||||||| || ||||||||||||||||||||||||||||
Sbjct 654 ATGAAGATGATGATGGTTTAGGCGATGA-CTTGTCTCCTGAAGAATTTGAAGTTGCTAAA 712
Query 698 ATGGTAGCAGATATTGTGTCTGAGACGCTCGTTGTTATAAAAGAGCTTATCCGTGCTATC 757
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 713 ATGGTAGTAGATATTGTGTCTGAGACGCTCGTGGTTATAAAAGAGCTTATCCGTGCTTTC 772
Query 758 ACATGCATGATCAAGCTGGAGAATCCAAAGGATAATAGTGAGTTTGTGGATTCGT-TTGA 816
||| ||||||||||||||||||||||||| |||||||||||||||||||| || | ||||
Sbjct 773 ACAGGCATGATCAAGCTGGAGAATCCAAATGATAATAGTGAGTTTGTGGACTC-TCTTGA 831
Query 817 GAAGTTACTGAAGTTGTGTCAAGGAATTGGTGTACAGATTGATGAGCTTGGAGCTTGTGT 876
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 832 GAAGTTACTGAAGTTGTGTCAAGGCATTGGAGTACAGATTGATGAGCTTGGAGCCTGTGT 891
Query 877 TTACCCGCCGCAAGAGTTTGGTCTCATGAAACAAACAGTGGAGAACATGA-GGGAAAGTA 935
||| || |||||||||||||||||||||||||||||||||||||| || | |||||| ||
Sbjct 892 TTATCCACCGCAAGAGTTTGGTCTCATGAAACAAACAGTGGAGAAAAT-ATGGGAAACTA 950
Query 936 TTGGTGAGATTGAGTCTGATGTTAAGAGTTCCAAGAATTCTTCATCAGAAGCTTTATCAG 995
|||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||| |
Sbjct 951 TTGGTGAGATTGAGACTGGTGTTAAGAGTTTCGAGAATTCTTCATCAGAAGCTTTATCGG 1010
Query 996 GATCATGCAGAAGGCTGCAGAGTTTGATTGAACATATGGTAACCGAGTTGGACACAAGAA 1055
|||||||||||||||||||| |||||||||||||||||| ||||||| ||| ||||||||
Sbjct 1011 GATCATGCAGAAGGCTGCAGGGTTTGATTGAACATATGGAAACCGAGCTGGGCACAAGAA 1070
Query 1056 TCGAAGCTGAAGTAGTTTACAAAATGCAGAATGTTACTCTTTAGCACTGAGAAAAGTTTG 1115
| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1071 TAGAAGCTGAAGTAGTTTGCAAAATGCAGAATGTTAATCTTTAGCACTTAGAAAAGTTTG 1130
Query 1116 AACTTAAGGTTCTTACTTCTTAACTT 1141
| |||||||||||||||||||||||
Sbjct 1131 GATTTAAGGTTCTTACTTCTTAACTT 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47005556661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5