BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71160.1
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476248 jgi|Araly1|476248|fgenesh2_kg.2__1378__AT1G71160.1 2374 0.0
> Ahg476248 jgi|Araly1|476248|fgenesh2_kg.2__1378__AT1G71160.1
Length=1507
Score = 2374 bits (1285), Expect = 0.0
Identities = 1435/1509 (95%), Gaps = 4/1509 (0%)
Strand=Plus/Plus
Query 1 ATCTTGCTTCTCTCTTTTCCCA-GTTTGGTTTCTAGAATATGGAATCGAGCTTTCATTTC 59
||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATCTTGCTTCTCTCTTTTCTCATTTTTGGATTCTAGAATATGGAATCGAGCTTTCATTTC 60
Query 60 ATCAATGAAGCTCTCCTTATCACTCAGACCTTTATCACTTTTCACCAATTCCTGGTAGCA 119
|||||| |||||||||||||||||||||| ||||| || |||| ||| ||||||| ||||
Sbjct 61 ATCAATCAAGCTCTCCTTATCACTCAGACTTTTATGACCTTTCCCCATTTCCTGGCAGCA 120
Query 120 TCAGCCTGTGTTCTCATAGCTGTCTTTGGTTACTATTTCTTCAAACCAAGATGTATTATA 179
|| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 121 TCGGCCTGTGTTCTCATAGCGGTTTTTGGTTACTATTTCTTTAAACCAAGATGTATTATA 180
Query 180 TACCTCATTGACTTCTCATGTTATCAACCTCCTGACTTCTTGCGAGCTCCGGTCTCTAAT 239
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TACCTCATTGATTTCTCATGTTATCAACCTCCTGACTTCTTGCGAGCTCCAGTCTCTAAT 240
Query 240 TTCATTGAGCATCTTACCATTTCCGGTGTTTTTGATCAAGAAAGTCTTGATCTCCAGCAG 299
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCATTGAGCATCTTACGATTTCCGGTGTTTTTGATCAAGAAAGTCTTGATCTCCAGCAA 300
Query 300 AAGATTTTAGAGCGATCAGGGATTAGTGATGACGCGAGCGTGCCTGCGACAGTCCATGAG 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGATTTTAGAGCGGTCAGGGATTAGTGATGACGCGAGCGTGCCTGCGACAGTCCATGAG 360
Query 360 ATTCCACCAAACGCTTCTATCTCTGCAGCTAGAGAAGAAACTCATGAGATCCTCTTCGCT 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTCCACCAAACGCTTCTCTCTCTGCAGCTAGAGAAGAAACTCATGAGATCCTCTTCGCT 420
Query 420 ATTGTCCAAGATCTTTTCTCAAAGCATGAGATAGATCCAAAGAGTATTGACATCCTTGTG 479
||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 ATTGTTGAAGACCTTTTCTCAAAGCATGAGATAGATCCTAAGAGTATTGACATCCTTGTG 480
Query 480 TCTAACTGCAGCCTATTCTGTCCTTCTCCATCCATAACTTCTATGATCATTAACAAGTTT 539
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 481 TCTAACTGCAGCCTATTCTGTCCTTCTCCATCCATAACCTCTATGATCATAAACAGGTTT 540
Query 540 GGCATGAGGAGTGACATAAAGAGCTTCAGTTTGAGCGGTATGGGCTGCAGCGCCGGGATT 599
||||||||||| || ||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 541 GGCATGAGGAGCAACGTAAAGAGCTTCAGCTTGAGCGGAATGGGCTGCAGTGCCGGGATT 600
Query 600 CTTTCGGTTAATCTCGTAAAAGATCTTATGAAGATTCATGGTGATTCTTTGGCCCTAGTG 659
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 CTTTCGGTTAATCTTGTGAAAGATCTTATGAAGATTCATGGTGACTCTTTGGCCCTAGTG 660
Query 660 TTGAGTATGGAAGCTGTTAGTCCAAATGGTTACAGAGGGAAGTGTAAGTCGATGCTCATT 719
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 TTGAGTATGGAAGCTGTGAGTCCAAATGGTTACAGAGGGAAGTGTAAGTCAATGCTCATT 720
Query 720 GCCAACACTATCTTCAGAATGGGTGGGGCTGCGATTCTTCTTTCCAATAGGAAGCAAGAT 779
|| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 721 GCTAACACTATCTTCAGAATGGGTGGGGCTGCGATTCTTATTTCCAACAGGAAGCAAGAT 780
Query 780 TCGCATAAGGCGAAATACAAACTCCAGCATATTATCAGAACTCATGTTGGTTCAGACACT 839
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 781 TCGCATAAGGCGAAATACAAACTCCAGCACATTATCAGAACTCATGTCGGTTCAGACACT 840
Query 840 GAATCGTACGAGAGTGTAATGCAGCAAGTTGATGAAGAAGGAAAAGTGGGAGTAGCATTG 899
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAATCCTACGAGAGTGTAATGCAGCAAGTTGATGAAGAAGGAAAAGTGGGAGTAGCATTG 900
Query 900 TCCAAGCAGCTTGTGAGGGTAGCATCAAAGGCCTTAAAGATCAACGTGGTGCAGTTAGGC 959
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 901 TCCAAGCAGCTTGTGAGGGTGGCATCAAAGGCCTTAAAGATCAACGTGGTGGAGTTAGGC 960
Query 960 CCTCGAGTGCTACCTTATTCAGAGCAGCTCAAATACATAATCTCATTCATCCAAAGAAAA 1019
||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 961 CCTCGGGTCCTACCTTATTCAGAGCAGCTCAAATACATAATCTCATTCATCAAAAGAAAA 1020
Query 1020 TGGGGAATGCACAAGGAGATATACACACCAAACTTCAAGAAAGCTTTTGAGCATTTCTGT 1079
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1021 TGGGGAATGCACAAGGAGATATACACACCCAACTTTAAGAAAGCTTTTGAGCATTTCTGT 1080
Query 1080 ATACATGCCGGAGGAAGGGCGATAATTGAAGGCGTGGAGAAGCATCTGAAGCTGGACAAG 1139
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1081 ATACATGCCGGAGGAAGGGCGATAATCGAGGGCGTGGAGAAGCATCTGAAGCTGGAAAAG 1140
Query 1140 GAAGACGTAGAAGCTTCAAGGTCAACTCTATATCGTTATGGGAACACATCTTCGTCTTCG 1199
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1141 GAAGACGTAGAAGCTTCAAGGTCAACTCTGTACCGTTATGGGAACACATCTTCGTCTTCA 1200
Query 1200 TTGTGGTATGAGCTGCAATACCTGGAAGCAAAAGGTAGAATGAAAATGGGAGATAAAGTA 1259
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1201 CTGTGGTATGAGCTGCAATACCTGGAAGCAAAAGGTAGAATGAAAAAGGGAGATAAAGTA 1260
Query 1260 TGGCAGATTGGGTTTGGAAGTGGCTTTAAGGCTAACAGTGCTGTCTGGAAATGCATCTCC 1319
|||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1261 TGGCAGATCGGGTTTGGAAGTGGCTTTAAAGCAAACAGTGCTGTCTGGAAATGCATTTCT 1320
Query 1320 GAGATCGATTCAAGAGGCAGGAATGCATGGTCTGATCGAATCCATTTGTATCCTGTCTGT 1379
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1321 GAGATCGATTCAAGAGACAGGAATGCATGGTCTGATCGAATCCATTTGTATCCGGTCTGT 1380
Query 1380 GGAGATACTTCAAGTGCATTGAAGACAGAGCTTCTTTCTTGACATTGATTTCGCTGCTCT 1439
|||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 1381 GGAGATGCTTCAAGTGCATTGAGGACAGAGCTCCTTTCTTGACATTGATT-CGCTGCTCC 1439
Query 1440 ATAGAATAGTTTAT-CAATTCCTTCGTATTCTCTCTGGTTTGCTCTTAAGCTGATTCATG 1498
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ATAGAATAGTTTATACA-TTCCTTCGTATTCTCTCTGGTTTGCTCTTAAGCTGATTCATG 1498
Query 1499 CATTGTAGG 1507
|||||||||
Sbjct 1499 CATTGTAGG 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56449743090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5