BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71170.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926466 jgi|Araly1|926466|scaffold_202027.1 1332 0.0
> Ahg926466 jgi|Araly1|926466|scaffold_202027.1
Length=942
Score = 1332 bits (721), Expect = 0.0
Identities = 852/917 (93%), Gaps = 2/917 (0%)
Strand=Plus/Plus
Query 2 GAAATGGAGACT-CAGTATCCGAAACTAATCGAACCATCCAAGACCCGAATTGGATGGAT 60
|||||||||| | || ||| ||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 20 GAAATGGAGAGTCCA-TATTCGAAACTCATCGATCCATCCAAGACTCGAATTGGATGGAT 78
Query 61 TGGGATCGGGATAATGGGATCAGCGATGGTTTCTCATATCCTCGCCGCAGGCTATTCAGT 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 79 TGGGATCGGGATAATGGGATCAGCCATGGTTTCTCATATCCTCGCCGCAGGCTATTCAGT 138
Query 121 CACCGTTTATGCTCGCGATCTTCGTAAAACAAAGGATCTGCAAACCAAAGGAGGTCGTAC 180
|||||| || ||||||||||| || ||| |||||||||||||||||||||||| ||| |
Sbjct 139 CACCGTCTACGCTCGCGATCTCCGGAAATCAAAGGATCTGCAAACCAAAGGAGCTCGCAT 198
Query 181 CGCCAATAGCCCCAAAGAGTTAGGGGAGATGAGCGACGTTGTGTTCACGATCGTTGGAAA 240
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 199 AGCCAATAGCCCCAAAGAGTTAGCGGAGATGAGCGACGTTGTGTTCACGATTGTTGGAAA 258
Query 241 CTCTAACGATGTTAGATCGTTGCTTCTTGGGGATGATGGTGTACTCTCTGGTCTTAAACC 300
|||||||||||| ||||||||||||| || || |||||||||||| |||||||||| ||
Sbjct 259 CTCTAACGATGTCCGATCGTTGCTTCTCGGTGAAGATGGTGTACTCGCTGGTCTTAATCC 318
Query 301 CGGTGGAGTAACAGTGGACATGACTAGTAGCAAGCCAGGATTGGCGCGTGAGATATACGC 360
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 319 CGGTGGAGTAACAGTGGATATGACTAGTAGCAAGCCGGGATTGGCGCGTGAGATACACGC 378
Query 361 GGAGGCGAGGCGGAGGGATTGCTGGGCGGTGGATGCGCCTGTATCGGGTGGAGACGCTGG 420
|||||||||| ||||| |||||||||||||||||||||| |||||||||||||| || ||
Sbjct 379 GGAGGCGAGGAGGAGGAATTGCTGGGCGGTGGATGCGCCGGTATCGGGTGGAGATGCCGG 438
Query 421 AGCACGTGAGGGGAAGCTAACGATATTCGCCGGCGGAGATTCCGAGATTGTGGAGTGGTT 480
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 439 AGCACGTGAGGGGAAGCTAACGATTTTCGCCGGCGGAGATTCTGAGATTGTGGAGTGGTT 498
Query 481 GGCTCCGGTGATGAAAACGATGGGAATTGTGAGGTTTATGGGAGGAGCTGGGAGTGGACA 540
||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 499 ATCTCCGGTGATGAAAACGATGGGAATTGTGAGGTATATGGGAGAAGCAGGGAGTGGACA 558
Query 541 GAGCTGTAAAATTGGGAATCAGATTTGTGTTGGAAGCAACATGATTGGATTAGCTGAAGG 600
||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 559 GAGCTGTAAGATTGGGAATCAGATTTGTGTAGGAAGCAACATGGTGGGATTAGCTGAAGG 618
Query 601 GATTGTGTTTGCTGAGAAGGCGGGTTTAGATCCGGTGAAATGGCTTGAGGCGGTTAAGGA 660
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 619 GATTGTCTTTGCTGAGAAGGCGGGTTTAGATCCGGTGAAATGGCTTGATGCGGTCAAAGA 678
Query 661 CGGTGCAGCTGGATCGGCGGTTATGCGGCTTTTCGGGGAGATGATGGCGGTGAGGGACTA 720
|||||| |||||||| |||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 679 CGGTGCGGCTGGATCTGCGGTTATGCGGCTTTTCGGGGAGATGATGACGGAGAGGGATTA 738
Query 721 TAAGGCGACGGGGTTTGCGGAGTATATGGTGAAAGATTTGGGAATGGCGGCGGAGGCGGC 780
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 739 TAAGGCGACGGGGTTTGCGGAGTACATGGTGAAAGATTTGGGAATGGCGGCGGAAGCAGC 798
Query 781 AATGGCGATGCCTGGAACTGCTTTGAACAAGCAGTTGTTCACTGTAATGGTGGCAAATGG 840
|| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 799 AACGGCGATGCCTGGAACTGCTTTGAACAAGCAGTTGTTCTCTGGAATGGTGGCAAATGG 858
Query 841 AGATGGGAAGTTAGGATTTCAAGGCGTCGTCGATGTTATTAGGAGACTTAACGGCTTATC 900
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 859 AGATGGGAAGTTAGGATTTCAAGGCGTCGTCTCTGTTATTAGGAGACTTAACGGCATATC 918
Query 901 CTGATAAAACTAGTGTT 917
||||| | |||||||||
Sbjct 919 CTGATGACACTAGTGTT 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5