BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71190.1
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476250 jgi|Araly1|476250|fgenesh2_kg.2__1380__AT1G71190.1 1351 0.0
Ahg948906 jgi|Araly1|948906|scaffold_800793.1 353 1e-96
Ahg931106 jgi|Araly1|931106|scaffold_303563.1 174 1e-42
> Ahg476250 jgi|Araly1|476250|fgenesh2_kg.2__1380__AT1G71190.1
Length=943
Score = 1351 bits (731), Expect = 0.0
Identities = 848/905 (94%), Gaps = 5/905 (1%)
Strand=Plus/Plus
Query 22 TCTCTCTgaagtagaagaagaagaagacgatgaagaagCGAACGATGTCCGCGTGGGGAT 81
||||||| ||| || ||||| |||||||||||||||||||||||||| ||| ||||| |
Sbjct 15 TCTCTCT-AAGAAGTAGAAG--GAAGACGATGAAGAAGCGAACGATGTACGCATGGGGCT 71
Query 82 CGGCGATTTTAATCTTCATAATACTTATGATCGTCACTCCCACAATCCCTCAATCTCAGG 141
|||||||| |||||||| || | |||||||||||||||||||| ||||||||||||||||
Sbjct 72 CGGCGATTGTAATCTTCGTAGTTCTTATGATCGTCACTCCCACCATCCCTCAATCTCAGG 131
Query 142 CTTACCACAATTTCGCCGATCAACGCTCCTTCCTCGGGATTCCAAATTTTTTAAACGTCA 201
|||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||
Sbjct 132 CTTACCACAATTTCGCCGATCAACGCTCCTTCTTCGGGATTCCGAATGCTTTAAACGTCA 191
Query 202 TCTCCAACTTCCCTTTCCTCATCATCGGCCTTATTGGTCTTATCCTCTGCTTTTACCCAG 261
||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 192 TCTCCAATTTCCCTTTCCTCATCATCGGCTTTATCGGTCTCATCCTCTGCTTTTACCCAG 251
Query 262 AAGATTACTTTAGCTTTAGTTTGCGAGGTGAGAAAATAGGATGGACTTGCTTTTACATCG 321
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 252 AAGATTACTTCAGCTTTAGTTTGCGAGGTGAGAAAATAGGATGGACTTGCTTTTACGTTG 311
Query 322 GTGTAGCTGCTGTTGCTTTTGGATCTTCTTACTATCATCTTCACCCAAACGATGCTACTC 381
|||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 312 GTGTGGCTTCTGTTGCTTTTGGATCTTCTTACTATCATCTTCACCCAAATGATGCTACTC 371
Query 382 TCCTCTGGGATCGTCTTCCCATGACTATTGCTTTCACATCAATCATGGCTATATTTGTAA 441
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 372 TCCTCTGGGATCGTCTTCCCATGACTATTGCATTCACATCAATCATGGCTATATTTGTAA 431
Query 442 TCGAGAGGATTGATGAGCATAAGGGTACTTACTCCATTGCTCCTTTACTTCTTGCTGGTC 501
|||| ||| |||||||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct 432 TCGAAAGGGTTGATGAGCATAAGGGTACTTACTCCATTGTTCCTTTGCTTCTAGCTGGTC 491
Query 502 TTGTTAGCATTTTGTATTGGAGGTTTTTCGATGACCTTAGGCCATATGCTTTGGTTCAGT 561
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 492 TTGTTAGCATTTTGTATTGGAGGTTTTTCGATGACCTTAGGCCATATGCTTTAGTCCAGT 551
Query 562 TTGTTCCTTGCATTGTGATTCCGTTGATGGCTATTTTATTGCCTCCAATGTATACACATT 621
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 552 TTGTTCCTTGCATTGTGATTCCGTTGATGGCTATCTTATTGCCTCCAATGTATACTCATT 611
Query 622 CCACTTATTGGCTATGGGCTGCAGGGTTCTATCTCTTAGCCAAGGTGGAAGAAGCTGCGG 681
| || |||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 612 CTACGTATTGGCTTTGGGCTGCAGGATTTTATCTCTTAGCCAAGGTGGAAGAAGCTGCGG 671
Query 682 ATAAGCCTATATATAGCTGGACTCATCATATTATTAGTGGGCATTCTCTGAAGCATCTGT 741
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 672 ATAAGCCTATATATAGCTGGACACATCATATTATTAGTGGGCACTCTCTGAAGCATTTGT 731
Query 742 GTGCCGCTATGGTCCCTGTCTTCCTTACCCTCATGCTTGCGAAAAGAACCGTTCAAACTG 801
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 732 GTGCCGCTATGGTCCCCGTCTTCCTTTCCCTCATGCTTGCGAAAAGAACCGTTCAAACTG 791
Query 802 AGAGGATTAGCTTGTATAAGACATGGAAGAAAGGATCCGAGGAAGA-ACGGTTCGAGCAT 860
|||||||||||||||||||||||||||||| |||||||||| |||| | |||| ||| ||
Sbjct 792 AGAGGATTAGCTTGTATAAGACATGGAAGATAGGATCCGAGAAAGATA-GGTTTGAGTAT 850
Query 861 AGCTACTCCAACGTTGCAGTCGAAGAGACTCGGTAGATTATTTTGTTGACTCGTAAAATG 920
|||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||
Sbjct 851 AGCTACTCCAACGTTGCAGTTGAAGAGACTCGGTAGGTTATTTTGGTGACTCGTATAATG 910
Query 921 TAAGA 925
|||||
Sbjct 911 TAAGA 915
> Ahg948906 jgi|Araly1|948906|scaffold_800793.1
Length=560
Score = 353 bits (191), Expect = 1e-96
Identities = 214/225 (95%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 178 GGATTCCAAATTTTTTAAACGTCATCTCCAACTTCCCTTTCCTCATCATCGGCCTTATTG 237
|||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 110 GGATTCCAAAATTTTTAAACGTCATCTCCAAATTCCCTTTCCTCATCATCAGCCTTATTG 169
Query 238 GTCTTATCCTCTGCTTTTACCCAGAAGATTACTTTAGCTTTAGTTTGCGAGGTGAGAAAA 297
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 170 GTCTCATCCTCTGCTTTTACCCAGAAGATTACTTCAGCTTTAGTTTGCGAGGTGAGAAAA 229
Query 298 TAGGATGGACTTGCTTTTACATCGGTGT-AGCTGCTGTTGCTTTTGGATCTTCTTACTAT 356
|||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||
Sbjct 230 TAGGATGGACTTGCTTTTACATCGGTGTGA-CTGCTGTTGCTTTTGGATCGTCTTACTAT 288
Query 357 CATCTTCACCCAAACGATGCTACTCTCCTCTGGGATCGTCTTCCC 401
|||||||||||||| |||||| ||||||||||||||| |||||||
Sbjct 289 CATCTTCACCCAAATGATGCTGCTCTCCTCTGGGATCCTCTTCCC 333
> Ahg931106 jgi|Araly1|931106|scaffold_303563.1
Length=395
Score = 174 bits (94), Expect = 1e-42
Identities = 105/110 (95%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 293 GAAAATAGGATGGACTTGCTTTTACATCGGTGT-AGCTGCTGTTGCTTTTGGATCTTCTT 351
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 78 GAAAATAGGATGGACTTGCTTTTACATCGGTGTGA-CTGCTGTTGCTTTTGGATCGTCTT 136
Query 352 ACTATCATCTTCACCCAAACGATGCTACTCTCCTCTGGGATCGTCTTCCC 401
||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 137 ACTATCATCTTCACCCAAATGATGCTGCTCTCCTCTGGGATCGTCTTCCC 186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40486537854
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5