BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71200.1
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908725 jgi|Araly1|908725|Al_scaffold_0002_1806 1155 0.0
> Ahg908725 jgi|Araly1|908725|Al_scaffold_0002_1806
Length=708
Score = 1155 bits (625), Expect = 0.0
Identities = 684/711 (96%), Gaps = 9/711 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCTCAACCGAATCATCAGACTTCAATATCAAGTTTACTCCATGATCGCTTGCAT 60
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGTCTTCTCAGCCGAATCATCAGACTTCAATATCAAGTTTACTTCATGATCGCTTGCAT 60
Query 61 ATCCCTCCTGCAGAAACAATCGTTGAGAAAGAGT-CT--GCAGAGAA-G--GACACTTGT 114
|||||||||||||||||||||||||||||| | | || |||||||| | |||||||||
Sbjct 61 ATCCCTCCTGCAGAAACAATCGTTGAGAAACACTCCTCCGCAGAGAAGGACGACACTTGT 120
Query 115 CAATCACAAAGAAAAAGGAAAGAACCAGTTTTGCATGAGGTTGATGGCTCAAGTAGTGGT 174
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CAATCACAAAGAAAAAGGAAAGAACCAGTTTTACATGAGGTTGATGGCTCAAGTAGTGGT 180
Query 175 GCAGCAAAGAAACAAGACCATAACGCTAAGGAGCGTTTAAGGAGGATGAGACTTCATGCC 234
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCATCAAAGAAACAAGACCATAACGCTAAGGAGCGTTTAAGGAGGATGAGACTTCATGCC 240
Query 235 TCTTACCTCACTCTTGGCACTCTTCTTCCTGACCATTCTTCTTCTTCTTCAAAGAAGAAA 294
|||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 241 TCTTACCTCACTCTCGGCACTCTTCTTCCTGATCATTCTTCTTCTTC--C-AAGAAGAAA 297
Query 295 TGGTCTGCACCATCTATAATCGATAATGTAATCACTTACATTCCCAAGCTACAGAATGAA 354
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 TGGTCTGCACCGTCTATAATCGATAATGTGATCACTTACATTCCCAAGCTACAGAATGAA 357
Query 355 GTTGGAGAGCTAACTCTAAGAAAGCAGAAGCTTGTGGAGTTAGAGAGACGAGGTCCTTCT 414
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 358 GTTGGAGAGCTAACTCTTAGAAAGCAGAAGCTTGTGGAGTTAGAGAGACGGGGTCCTTCC 417
Query 415 ATTCGAGCAATCTCGGTTCTTGAATTGGGGGAATCAGGTTATGAGGCTGTTGTACAGATA 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATTCGAGCAATCTCGGTTCTTGAATTGGGGGAATCAGGTTATGAGGCTGTTGTACAGATA 477
Query 475 TGCTTGAAGAAAGAAAACGAAGATGAGTTCTCCAACTTGCTTCATGTAATGGAGGTGCAA 534
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 478 TGCTTGAAGAAAGAAAACGAAGATGAGTTCTCGAACTTGCTTCATGTAATGGAGCTGCAA 537
Query 535 GGTTTGAGTGTTTTAAGTGCTTCTACTTCTCAAGTTTGCCGAGAGCAAAGGGTGGTTTGC 594
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGTTTGAGTGTTTTAAGTGCCTCTACTTCTCAAGTTTGCCGAGAGCAAAGGGTGGTTTGT 597
Query 595 TACAACTTCCATGTCAAGATGGATGAGAAGCCATGTGAAGGTGATGACTACATCACAGTG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TACAACTTCCATGTCAAGATGGATGAGAAGCCATGTGAAGGTGATGACTACATCACAGTG 657
Query 655 TTAAAGAACAACATCATTTCTTCGCTTCGTGACAACACAAAGTGCAAATGA 705
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 TTAAAGAACAACATCATTTCTTCGCTTCGTGACAACACAAAATGCAAATGA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25923583560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5