BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71230.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926474 jgi|Araly1|926474|scaffold_202035.1 1685 0.0
Ahg472541 jgi|Araly1|472541|fgenesh2_kg.1__2495__AT1G22920.1 1027 0.0
> Ahg926474 jgi|Araly1|926474|scaffold_202035.1
Length=1116
Score = 1685 bits (912), Expect = 0.0
Identities = 1041/1104 (94%), Gaps = 6/1104 (1%)
Strand=Plus/Plus
Query 94 AAAAGAATGGAGGGTTCGTCGTCGACGATAGCAAGGAAGACATGGGAACTAGAGAACAGC 153
|||| ||||||||||||||||||||| || |||||||||||||||||| | ||||||| |
Sbjct 18 AAAA-AATGGAGGGTTCGTCGTCGACCATTGCAAGGAAGACATGGGAATTGGAGAACAAC 76
Query 154 ATTCTAACAGTAGACTCACCTGATTCAACCTCCGACAACATCTTCTACTACGACGATACT 213
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 77 ATTCTAACAGTAGACTCACCTGATTCAACCTCCGATAACATCTTCTACTTCGACGATACT 136
Query 214 TCACAGACTAGGTTCCAGCAAGAGAAACCGTGGGAGAATGATCCTCACTACTTTAAACGA 273
|| || | |||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 137 TCGCAAAGTAGGTTCCAGCAAGAGAAGCCATGGGAGAATGATCCTCACTACTTCAAACGA 196
Query 274 GTCAAGATCTCAGCGCTCGCTCTTCTTAAGATGGTGGTTCACGCTCGCTCTGGTGGTACA 333
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 197 GTCAAGATCTCAGCGCTTGCCCTTCTTAAGATGGTGGTTCACGCTCGCTCTGGTGGAACA 256
Query 334 ATTGAAATAATGGGTCTTATGCAAGGTAAGACCGATGGTGATACTATCATTGTTATGGAT 393
||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||
Sbjct 257 ATTGAAATAATGGGTCTTATGCAGGGTAAGACTGATGGTGATGCTATCATTGTTATGGAT 316
Query 394 GCTTTTGCTTTACCAGTGGAAGGTACTGAGACAAGGGTTAATGCTCAGGATGATGCTTAT 453
||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 317 GCTTTCGCTTTGCCAGTGGAAGGAACTGAGACAAGGGTTAATGCTCAGGCTGATGCTTAT 376
Query 454 GAGTACATGGTTGAGTATTCACAGACCAACAAGCTCGCGGGGCGGCTGGAGAATGTTGTT 513
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 377 GAGTACATGGTTGAGTATTCTCAGACCAACAAGCTCGCGGGGCGGTTGGAGAATGTTGTT 436
Query 514 GGATGGTATCACTCTCACCCTGGATATGGATGCTGGCTCTCCGGTATTGATGTTTCTACG 573
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 437 GGGTGGTATCACTCTCACCCTGGATATGGATGCTGGCTCTCGGGTATTGATGTTTCTACG 496
Query 574 CAGAGGCTTAACCAACAGCATCAGGAGCCATTTTTAGCTGTTGTTATTGATCCCACAAGG 633
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CAGAGGCTTAACCAACAGTATCAGGAGCCATTTTTAGCTGTTGTTATTGATCCCACAAGG 556
Query 634 ACTGTTTCAGCTGGTAAGGTTGAGATTGGTGCTTTCAGAACATACTCTA-AAGGATATAA 692
|||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 557 ACTGTTTCAGCTGGTAAGGTTGAGATTGGTGCATTCAGAACATACTC-AGAAGGATATAA 615
Query 693 GCCTCCAGATGAACCTGTTTCTGAGTATCAAACTATTCCTTTAAATAAGATTGAGGACTT 752
|||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 616 GCCTCCGGATGAACCTGTTTCCGAGTATCAGACTATTCCTTTAAATAAGATCGAGGACTT 675
Query 753 TGGTGTTCACTGCAAACAGTACTATTCATTAGATGTCACTTATTTCAAGTCATCTCTTGA 812
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 676 TGGTGTTCACTGCAAGCAGTACTATTCATTAGATATCACTTATTTCAAGTCATCTCTTGA 735
Query 813 TTCTCACCTTCTGGATCTACTATGGAACAAGTACTGGGTGAACACTCTTTCTTCTTCTCC 872
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 736 TTCTCATCTTCTGGATCTCCTATGGAACAAGTATTGGGTGAACACTCTTTCTTCTTCTCC 795
Query 873 ACTGCTGGGTAATGGAGACTATGTTGCTGGACAAATATCAGACTTAGCTGAGAAGCTTGA 932
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 796 ACTGCTGGGCAATGGAGACTATGTTGCCGGACAAATATCAGACTTGGCTGAGAAGCTTGA 855
Query 933 GCAAGCCGAGAGTCATCTGGTTCAGTCTCGCTTTGGAGGAGTTGTGCCATCATCCCTTCA 992
|||||| |||| |||||||| ||| |||||| |||||| ||||||||||||||||||
Sbjct 856 GCAAGCGGAGAATCATCTGGCTCATTCTCGC---GGAGGAACTGTGCCATCATCCCTTCA 912
Query 993 TAAGAAAAAAGAGGATGAGTCTCAACTAACTAAGATAACTCGGGATAGCGCAAAGATAAC 1052
|| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 913 TAGGAAAAAAGAGGATGAGTCTCAACTAACTAAGATAACTAGGGATAGCTCAAAGATAAC 972
Query 1053 TGTGGAACAGGTCCATGGACTAATGTCGCAGGTCATAAAAGATGAATTATTCAACTCAAT 1112
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 973 TGTGGAACAGGTCCATGGACTAATGTCGCAGGTCATCAAAGATGTATTATTCAACTCAAT 1032
Query 1113 GCGTCAGTCCAACAACAAATCTCCCACTGACTCGTCGGATCCAGACCCTATGATTACATA 1172
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1033 ACGTCAGTCCAACAACAAATCTTCCACTGACTCGTCGGATCCAGAGCCTATGATTACACC 1092
Query 1173 TTGAAGTTGCTCTTCTTTTGGTTT 1196
||||||||||||||||||||||||
Sbjct 1093 TTGAAGTTGCTCTTCTTTTGGTTT 1116
> Ahg472541 jgi|Araly1|472541|fgenesh2_kg.1__2495__AT1G22920.1
Length=1296
Score = 1027 bits (556), Expect = 0.0
Identities = 923/1098 (84%), Gaps = 33/1098 (3%)
Strand=Plus/Plus
Query 99 AATGGAGGGTTCGTCGTCGA-CGATAGCAAGGAAGACATGGGAACTAGAGAACAGCATTC 157
|||||| ||||||||||| | | || || |||||||||||||| |||||||||| |||||
Sbjct 126 AATGGAAGGTTCGTCGTC-AGCCATCGCGAGGAAGACATGGGAGCTAGAGAACAACATTC 184
Query 158 TAACAGTAG-ACTC-ACCTGATTCAACCTCCGACAACATCTTCTACTACGACGATACTTC 215
| ||||| | || | ||| |||||| ||||||| | || ||| |||||||||| || |
Sbjct 185 TCACAGTGGAAC-CAACC-GATTCAGCCTCCGATAGTATTTTCCACTACGACGACGCTGC 242
Query 216 AC-AGACTAGGTTCCAGCAAGAGAAACCGTGGGAGAATGATCCTCACTACTTTAAACGAG 274
| || | | ||||||| ||||| || |||| |||||| ||||||| || || |
Sbjct 243 GCAAG-CCAAAATCCAGCAGGAGAAGCCATGGGCCTCCGATCCTAACTACTTCAAGCGCG 301
Query 275 -TCAAGATCTCAGCGCTCGCTCTTCTTAAGATGGTGGTTCACGCTCGCTCTGGTGGTACA 333
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 302 TTCAA-ATCTCAGCACTCGCTCTTCTTAAGATGGTGGTTCACGCTCGCTCTGGTGGAACA 360
Query 334 ATTGAAATAATGGGTCTTATGCAAGGTAAGACCGATGGTGATACTATCATTGTTATGGAT 393
|| || || |||||||| ||||| || |||||||| |||||||| |||||||||||||||
Sbjct 361 ATCGAGATCATGGGTCTGATGCAGGGAAAGACCGAGGGTGATACCATCATTGTTATGGAT 420
Query 394 GCTTTTGCTTTACCAGTGGAAGGTACTGAGACAAGGGTTAATGCTCAGGATGATGCTTAT 453
||||||||||| || || ||||| |||||||| |||||||||||||||| |||||| |||
Sbjct 421 GCTTTTGCTTTGCCTGTTGAAGGAACTGAGACTAGGGTTAATGCTCAGGCTGATGCGTAT 480
Query 454 GAGTACATGGTTGAGTATTCACAGACCAACAAGCTCGCGGGGCGGCTGGAGAATGTTGTT 513
||||| |||||||| || || |||||||||||||| || ||| || ||||||| ||||||
Sbjct 481 GAGTATATGGTTGAATACTCTCAGACCAACAAGCTGGCTGGGAGGTTGGAGAACGTTGTT 540
Query 514 GGATGGTATCACTCTCACCCTGGATATGGATGCTGGCTCTCCGGTATTGATGTTTCTACG 573
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 541 GGATGGTATCACTCTCACCCTGGATATGGATGTTGGCTCTCGGGTATTGATGTTTCGACA 600
Query 574 CAGAGGCTTAACCAACAGCATCAGGAGCCATTT-TTAGCTGTTGTTATTGATCCCACAAG 632
|||| ||||||||||||| |||||||||| ||| |||||||||||||||||||| |||||
Sbjct 601 CAGATGCTTAACCAACAGTATCAGGAGCC-TTTCTTAGCTGTTGTTATTGATCCAACAAG 659
Query 633 GACTGTTTCAGCTGGTAAGGTTGAGATTGGTGCTTTCAGAACATACTCTAAAGG-ATATA 691
||||||||| |||||||||||||||||||| || ||||||||||| || | ||| | |||
Sbjct 660 GACTGTTTCGGCTGGTAAGGTTGAGATTGGGGCATTCAGAACATA-TCCAGAGGGACATA 718
Query 692 AGC-CTCCAGATGAACCTGTTTCTGAGTATCAAACTATTCCT-TTAAATAAGATTGAGGA 749
|| ||| ||||| | ||| ||||||||||| ||||| ||| |||| ||||| |||||
Sbjct 719 AGATCTCG-GATGATCATGTATCTGAGTATCAGACTATCCCTCTTAAC-AAGATCGAGGA 776
Query 750 CTTTGGTGTTCACTGCAAACAGTACTATTCATTAGATGTCACTTATTTCAAGTCATCTCT 809
||||||||| || |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 777 CTTTGGTGTACATTGCAAACAGTACTACTCATTGGACATCACTTATTTCAAGTCATCTCT 836
Query 810 TGATTCTCACCTTCTGGATCTACTATGGAACAAGTACTGGGTGAACACTCTTTCTTCTTC 869
||| ||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 837 CGATAGTCATCTTCTGGATCTCCTTTGGAACAAGTACTGGGTGAACACTCTTTCTTCTTC 896
Query 870 TCCACTGCTGGGTAATGGAGACTATGTTGCTGGACAAATATCAGACTTAGCTGAGAAGCT 929
|||||| | || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 897 CCCACTGTTAGGCAATGGAGACTATGTTGCCGGACAAATATCAGACTTGGCTGAGAAGCT 956
Query 930 TGAGCAAGCCGAGAGTCATCTGGTTCAGTCTCGCTTTGGAGGAGTTGTGCCATCATCCCT 989
|||||||| |||| ||| || | ||| || || ||||||||| ||| | | || ||
Sbjct 957 CGAGCAAGCGGAGAATCAGCTTGCTCACTCCCGGTTTGGAGGAATTG--C-ACCAGCCGG 1013
Query 990 TCATAAGA--A-AAAAGAGGATGAGTCTCAACTAACTAAGATAACTCGGGATAGCGCAAA 1046
||| ||| | ||||||||||||| ||||||| | ||||||||||||||||| |||||
Sbjct 1014 TCACCAGAGGAGAAAAGAGGATGAGCCTCAACTCGCGAAGATAACTCGGGATAGTGCAAA 1073
Query 1047 GATAACTGTGGAACAGGTCCATGGACTAATGTCGCAGGTCATAAAAGATGAA-TTATTCA 1105
|||||| || || |||||||||||||||||||| ||||| || ||||| | || ||||
Sbjct 1074 GATAACCGTCGAGCAGGTCCATGGACTAATGTCACAGGTTATCAAAGAC-ATCTTGTTCA 1132
Query 1106 ACTCAATGCGTCAGTCCAACAACAAATCTCCCA-CTGACTCGTCGGATCCAGA-CCCTAT 1163
| || || |||||||| || ||||||| | ||||| || |||||||| ||| ||
Sbjct 1133 ATTCCGCACGCCAGTCCAAGAAG---TCTCCCAAC-GACTCATCAGATCCAGAGCCC-AT 1187
Query 1164 GATTACATATTGAAGTTG 1181
|||||||| ||||||||
Sbjct 1188 GATTACATCGTGAAGTTG 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5