BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71240.1 Length=2676 Score E Sequences producing significant alignments: (Bits) Value Ahg476255 jgi|Araly1|476255|fgenesh2_kg.2__1385__AT1G71240.1 4193 0.0 > Ahg476255 jgi|Araly1|476255|fgenesh2_kg.2__1385__AT1G71240.1 Length=2672 Score = 4193 bits (2270), Expect = 0.0 Identities = 2554/2687 (95%), Gaps = 36/2687 (1%) Strand=Plus/Plus Query 1 GGTGTTTTGCTATTGTACGCCTCTTTCTCTCCAAAGCtttttttttttCAGCTACAGAAA 60 ||||||||||||||||||||||| ||||||||| || |||||||||||||||| | Sbjct 1 GGTGTTTTGCTATTGTACGCCTC--TCTCTCCAACGC-----TTTTTTCAGCTACAGACA 53 Query 61 TGGCGCAGAGAGTCGGAGCATTGAAAAGATTGAAACTTTCTTCTGCAACTCCAGATTTTC 120 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 54 TGGCGCAGAGAGTCGGAGGATTGAAAAGATTGAAACTTTCTTCTGCAACTCCAGAATTTC 113 Query 121 CTATTGGTTTCCGTTGTGATGGAGTTCGTGTTCATCGACGCTGCTCTTTCTCCAGAAATT 180 |||||| ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| Sbjct 114 CTATTGTTTTCCGTTGTGATGGAGCTCGTGTTCATCGACGTTGCTCTTTCTCGAGAAATT 173 Query 181 GTGCTTCTAATCGAAAGCCAAGACTCCGAATTGTTGCTCAGAAGAAATGGAAATTGAACG 240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 GTTCTTCTAATCGAAAGCCAAGACTCCGAATTGTTGCTCAGAAGAAATGGAAATTGAACG 233 Query 241 ATATCGACACAAATGTTGTACAAGAACGATTTAGTCA-GTGGGTGTCGAAATCACAGAAA 299 |||||||| |||||| |||||||||||||||||| | ||||||||| |||||||||||| Sbjct 234 ATATCGACCCAAATGCAGTACAAGAACGATTTAGT-AGGTGGGTGTCTAAATCACAGAAA 292 Query 300 ATTCTGAGTGATGTAACATCTCCATTGAAGAAAAAGAGTCAGAGTCTCAAAAAGATTGAT 359 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 293 ATTCTGAGTGATGTAACATCTCCGTTGAAGAAAAAGAGTCAGAGTCTCAAAAAGGTTGAT 352 Query 360 CTTGAGGATCAACAAGATTTTGAAGACTTGGAGGAACTTCTTACAGTTGAACAAACTGTT 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 353 CTTGAGGATCAACAAGATTTTGAAGACTTGGAGGAACTTCTTACAGTTGAACAAACAGTT 412 Query 420 CGAAGTGATACACCAAAAGGGTTTCTTTCTTTTGATGCTATTATCTCCATTGAACAGTTT 479 |||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||| Sbjct 413 CGAAGTGATACACCAAAAGGATCTCTTTCTTTTGATGCTATTATCTCCATCGAGCAGTTT 472 Query 480 AGTAGCAGGATGAATGGAATCACTGGGAAGAAAATGCAGGATATATTTGAAACAATTGTT 539 || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 473 AGCAGCAGGATGAATGGAATAACTGGGAAGAAAATGCAGGATATATTTGAAACACTTGTT 532 Query 540 TCTCCAGCTTTATCTACTGATGCCCGGTACT-TGGTGGAGTATTGCTGTTTCAGGTTTTT 598 || |||| ||||||||| ||||| || || | |||||||||||||||||||||||||||| Sbjct 533 TCCCCAGTTTTATCTACCGATGCTCGATA-TCTGGTGGAGTATTGCTGTTTCAGGTTTTT 591 Query 599 ATCGAGGGATAGCTCGGAGTTTCATCCGTGTCTCAAGGAACCTGCATTCCAGAGGCTTA- 657 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 592 ATCGAGGGATAGCTCGGAGTTTCATCCGTGTCTTAAGGAACCTGCATTCCAGAGGC-TAG 650 Query 658 TATTCATCACAATGCTCGCGTGGGCGAATCCATATTGTAAAGAAAGAAATGCACGCAATG 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 651 TATTCATCACAATGCTCGCGTGGGCGAATCCATATTGTAAAGAAAGAAATGCACGCAATG 710 Query 718 ATGCCTCAGGAAAACCTTCTTTTCAGGGACGATTTATTGGGGAAGAGGCATTTATTCGTA 777 ||||||||||||||||||||||||||||||| ||| | || ||| | |||||| |||||| Sbjct 711 ATGCCTCAGGAAAACCTTCTTTTCAGGGACGGTTTGTAGGTGAAAAAGCATTTGTTCGTA 770 Query 778 TTGCTCCAGCTATTTCAGGCTTGGCTGATAGGGCTACTGTACATAACCTTTTCAAGGCTC 837 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 771 TTGCTCCAGCAATTTCAGGCTTGGCTGATAGGGCTACTGTACATAACCTTTTCAAGGCTC 830 Query 838 TAGCTACTGCCACTGATCAAAAAGGCATTTCTTTGGAGATTTGGCTTGCTTACATCCAGG 897 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 TAGCTGCTGCCACTGATCAAAAAGGCATTTCTTTGGAGATTTGGCTTGCTTACATCCAGG 890 Query 898 AACTTGTCAAAATACACGAGGGACGGAAGTCACACCAGACTACAGACTTTCCGCAGTTGT 957 ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 891 AACTTGTCAAAATACACGAAGGACGGAAGTCACACCAGACTACAGACTTTCCAAAGTTGT 950 Query 958 CATCGGAGAGACTTTTATGCATGGCCGCCAACAGGAAAGGACCTGTTTTAAAGTGGGAGA 1017 ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 951 TATCGGAGAGACTTTTATGCATGGCCTCTAACAGGAAAGGACCTGTTTTAAAGTGGGAGA 1010 Query 1018 ATAACGTTGCATGGCCTGGAAAACTTACTTTAACTGATAAAGCCCTCTATTTCGAGCCAG 1077 ||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| Sbjct 1011 ATAACGTTGCATGGCCTGGAAAACTTACTCTAACTGATAAAGCTCTCTATTTTGAGCCAG 1070 Query 1078 TTGACATAAAAGGAAGTAAAGGGGTCTTGAGACTTGATCTCGCTGGAGACAAGTCAACAG 1137 ||||| |||| |||||||||||||||||||||||||||||||| || ||||||||||| | Sbjct 1071 TTGACTTAAAGGGAAGTAAAGGGGTCTTGAGACTTGATCTCGCAGGGGACAAGTCAACTG 1130 Query 1138 TGGAGAAAGCGAAAGTGGGGCCTCT-GGGCTTTTCTCTCTTTGATTCTGCAGTTTCTGTT 1196 ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 1131 TGGAGAAAGCGAAAGTGGGGCCTCTAGGG-TTTTCTCTCTTTGATTCTGCAGTTTCTGTT 1189 Query 1197 TCATCCGGCCCCGGGTTGGCCACTTGGGTTCTGGAGTTCGTTGACCTTGGAGGAGAACTT 1256 || |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1190 TCGTCCGGCCCTGGGTTGGCCACTTGGGTTCTGGAGTTCGTTGACCTAGGAGGTGAACTT 1249 Query 1257 AGACGAGATGTTTGGCATGCAATTATTAGTGAAGTTATAGCATTGCACACATTTCTACGA 1316 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| Sbjct 1250 AGACGAGATGTTTGGCATGCAATTATTAGTGAAGTTATAGCGTTGCACAAATTTTTACGA 1309 Query 1317 GAATTTGGGCCAGGAGAGGGTGATAAGTCGCTGTATCAAGTGTTTGGTGCAAAGAAGGGT 1376 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1310 GAATTTGGGCCAGAAGAGGATGATAAGTCGCTGTATCAAGTGTTTGGTGCAAAGAAGGGT 1369 Query 1377 AAGGAAAAAGCAATTGCAAGTGCATCTAACTGTATTGCAAGACTTCAAGCTCTTCAATAT 1436 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1370 AAGGAAAAGGCAGTTGCAAGTGCATCTAACTGTATTGCAAGACTTCAAGCTCTTCAATAT 1429 Query 1437 ATGCGGAATTTGCCTGATGATCCTATCAAACTAGTTCAGTTCTCTTTTCTTCAACAAGTA 1496 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1430 ATGCGGAATTTGCCTGATGATCCTATCAAAGTAGTTCAGTTCTCTTTTCTTCAACAAGTA 1489 Query 1497 GCCTATGGTGACATCGTGTGTCAAACTTTAGCCGTAAATTTTTGGGGTGGACCACTATTG 1556 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1490 GCCTATGGTGACATCGTGTGTCAAACTTTAGCTGTAAATTTTTGGGGTGGACCACTATTG 1549 Query 1557 ACCAAAGTTTCAGACA------A-A--CGAGGTGATATTGCCAGGGCTTCCAGAGAGTCC 1607 |||||| || |||||| | | ||||||||||||||||||||||||||||||||| Sbjct 1550 ACCAAAATTGCAGACACGGTCTACAAACGAGGTGATATTGCCAGGGCTTCCAGAGAGTCC 1609 Query 1608 TATGAAACTTTTGATAACGTGTCTGATCTAGATGGAAGTGTTTACTTGAAAAGGTGGATG 1667 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1610 TATGAAACTTTTGATAACGTGTCTGATCTAGATGGAAGTGTCTACTTGAAAAGGTGGATG 1669 Query 1668 AGATCTCCTTCCTGGGGTTCAACTGCATCCATGAACTTCTGGAAAAACTCTTCTCTAAGA 1727 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1670 AGATCTCCCTCCTGGGGTTCAACTGCATCCATTAACTTCTGGAAAAACTCTTCTCTAAGA 1729 Query 1728 CAAGGCTTAGTTCTGAGCAAACACCTTGCGGTTGCTGATCTTACACTTGTAGAGAGGGCA 1787 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 1730 CAAGGCTTAGTTCTGAGCAAACACCTTGCAGTTGCTGATCTCACACTTGTAGAGAGAGCA 1789 Query 1788 ACAGAAACATGTAGACAAAAATACAAGGTGGTCGAAAAAACTCAAGCCACTATTGATGCT 1847 |||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 1790 GCAGAAACATGTAGACAAAAATATAAGGTGGTAGAAAAAACTCAAGCCACAATTGATGCT 1849 Query 1848 GCAACTATCAAAGGGATACCTAGTAACATTGACCTCTTTAAGGAACTCATTCTACCACTG 1907 ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1850 GCAACCATCAAAGGGATACCTAGTAACATTGATCTCTTTAAGGAACTCATTCTGCCACTG 1909 Query 1908 AGTATAACTGCCACAGAGTTTGAGAAACTCAGGTGCTGGGAGGAGCCTTACATGACGGTC 1967 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1910 AGTATAACTGCCACAAAGTTTGAGAAACTCAGGTGCTGGGAGGAGCCTTACATGACGGTC 1969 Query 1968 TCTTTTCTAGCATTTGCATCAACGATAATTTTCAGGAACCTTTTGCAGTACGTTCTTCCC 2027 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1970 TCTTTTCTAGCAGTTGCATCAACGATAATTTTCAGGAACCTTTTGCAGTACGTTTTTCCT 2029 Query 2028 GTGTCTTTGATATTTTTGGCAACTGGGATGCTTACGTTGAAGGGACTCAGACGACAAGGC 2087 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2030 GTGTCTTTGATATTTTTGGCTACTGGGATGCTTACGTTGAAGGGACTCAGACGACAAGGC 2089 Query 2088 CGTCTAGGAAGATTGTTTGGAATAATTAGCATTCGAGATCAGCCATCTTCAAATACTATT 2147 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 2090 CGTCTAGGAAGATTGTTTGGAATAGTTACCATTCGAGATCAGCCATCTTCAAATACTATT 2149 Query 2148 CAAAAAATAATTGCTGTCAAAGACGCCATGCAAAATCTGGAGAGCTATCTCCAAAAGGTG 2207 |||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||| Sbjct 2150 CAAAAAATTATTGCTGTAAAAGAAGCCATGCAAGATCTGGAGAGCTATCTCCAAAAGGTG 2209 Query 2208 AATGTAGTGCTTCTAAAACTACGGACAATTGTATTATCTGGTCATCCTCAGATAACTACT 2267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2210 AATGTAGTGCTTCTAAAACTACGGACAATTGTATTATCTGGTCATCCTCAGATAACTACT 2269 Query 2268 GAAGTAGCACTGGCTATGCTATCTATTGCAACGGTTCTAGTCATTGTCCCTTTCAAGTAT 2327 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2270 GAAGTAGCACTGGTTTTGCTATCTATTGCAACGGTTCTAGTCATTGTCCCTTTCAAGTAT 2329 Query 2328 GTTCTGGCTTTTGTTCTCTACGATCAATTTACTCGGGAGCTCGAGTTCCGGAAAGAAATG 2387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2330 GTTCTGGCTTTTGTTCTCTACGATCAATTTACTCGGGAGCTCGAGTTCCGGAAAGAAATG 2389 Query 2388 GTCAAGAAATTTAATGCTTTCTTACGGGAACGTTGGGAGATGGTACCAGCAGCTCCTGTC 2447 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2390 GTCAAGAAATTTAATGCTTTCTTACGGGAACGTTGGGAGATGGTACCGGCAGCTCCTGTC 2449 Query 2448 ATTGTTTTACCGTTTGTTAA-TGAAGAGTCTACACCAGCAACTCAGGAAAACAAGCAGCT 2506 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 2450 ATTGTTTTACCGTTTGT-AAGTGAAGAGTCTACACCAGCAACTCAGGAAAACAAGCAGCT 2508 Query 2507 CAGAAAACCAACACCGAGAGGTGATTGATAAAAAGTGCCAAA-TTTGTATAATCTAGTGG 2565 |||||||| ||||| |||| ||||||||||| ||||||||| ||||||||||||||||| Sbjct 2509 CAGAAAACAAACACAGAGA--TGATTGATAAAGAGTGCCAAAATTTGTATAATCTAGTGG 2566 Query 2566 C-GTGTGCATGTTTTA-A--C--TAGAAGCTCAAGAAGGAACAAATATCAAATTGTAGTT 2619 | | |||||||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 2567 CAG-GTGCATGTTTTAGATACACTAGAAGCTCAAGAAGGAACAAATATCAAATTGTAGTT 2625 Query 2620 GACAATGATTCATTAAATGTATATGAAAAGTAGTATAGATGTTAGTT 2666 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2626 GACAATGATTCATTAAATGTATATGAAAAGTAGTATAGATGTTAGTT 2672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100939149250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5