BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71240.1
Length=2676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476255 jgi|Araly1|476255|fgenesh2_kg.2__1385__AT1G71240.1 4193 0.0
> Ahg476255 jgi|Araly1|476255|fgenesh2_kg.2__1385__AT1G71240.1
Length=2672
Score = 4193 bits (2270), Expect = 0.0
Identities = 2554/2687 (95%), Gaps = 36/2687 (1%)
Strand=Plus/Plus
Query 1 GGTGTTTTGCTATTGTACGCCTCTTTCTCTCCAAAGCtttttttttttCAGCTACAGAAA 60
||||||||||||||||||||||| ||||||||| || |||||||||||||||| |
Sbjct 1 GGTGTTTTGCTATTGTACGCCTC--TCTCTCCAACGC-----TTTTTTCAGCTACAGACA 53
Query 61 TGGCGCAGAGAGTCGGAGCATTGAAAAGATTGAAACTTTCTTCTGCAACTCCAGATTTTC 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 54 TGGCGCAGAGAGTCGGAGGATTGAAAAGATTGAAACTTTCTTCTGCAACTCCAGAATTTC 113
Query 121 CTATTGGTTTCCGTTGTGATGGAGTTCGTGTTCATCGACGCTGCTCTTTCTCCAGAAATT 180
|||||| ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 114 CTATTGTTTTCCGTTGTGATGGAGCTCGTGTTCATCGACGTTGCTCTTTCTCGAGAAATT 173
Query 181 GTGCTTCTAATCGAAAGCCAAGACTCCGAATTGTTGCTCAGAAGAAATGGAAATTGAACG 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GTTCTTCTAATCGAAAGCCAAGACTCCGAATTGTTGCTCAGAAGAAATGGAAATTGAACG 233
Query 241 ATATCGACACAAATGTTGTACAAGAACGATTTAGTCA-GTGGGTGTCGAAATCACAGAAA 299
|||||||| |||||| |||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 234 ATATCGACCCAAATGCAGTACAAGAACGATTTAGT-AGGTGGGTGTCTAAATCACAGAAA 292
Query 300 ATTCTGAGTGATGTAACATCTCCATTGAAGAAAAAGAGTCAGAGTCTCAAAAAGATTGAT 359
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 293 ATTCTGAGTGATGTAACATCTCCGTTGAAGAAAAAGAGTCAGAGTCTCAAAAAGGTTGAT 352
Query 360 CTTGAGGATCAACAAGATTTTGAAGACTTGGAGGAACTTCTTACAGTTGAACAAACTGTT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 353 CTTGAGGATCAACAAGATTTTGAAGACTTGGAGGAACTTCTTACAGTTGAACAAACAGTT 412
Query 420 CGAAGTGATACACCAAAAGGGTTTCTTTCTTTTGATGCTATTATCTCCATTGAACAGTTT 479
|||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||||
Sbjct 413 CGAAGTGATACACCAAAAGGATCTCTTTCTTTTGATGCTATTATCTCCATCGAGCAGTTT 472
Query 480 AGTAGCAGGATGAATGGAATCACTGGGAAGAAAATGCAGGATATATTTGAAACAATTGTT 539
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 473 AGCAGCAGGATGAATGGAATAACTGGGAAGAAAATGCAGGATATATTTGAAACACTTGTT 532
Query 540 TCTCCAGCTTTATCTACTGATGCCCGGTACT-TGGTGGAGTATTGCTGTTTCAGGTTTTT 598
|| |||| ||||||||| ||||| || || | ||||||||||||||||||||||||||||
Sbjct 533 TCCCCAGTTTTATCTACCGATGCTCGATA-TCTGGTGGAGTATTGCTGTTTCAGGTTTTT 591
Query 599 ATCGAGGGATAGCTCGGAGTTTCATCCGTGTCTCAAGGAACCTGCATTCCAGAGGCTTA- 657
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 592 ATCGAGGGATAGCTCGGAGTTTCATCCGTGTCTTAAGGAACCTGCATTCCAGAGGC-TAG 650
Query 658 TATTCATCACAATGCTCGCGTGGGCGAATCCATATTGTAAAGAAAGAAATGCACGCAATG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TATTCATCACAATGCTCGCGTGGGCGAATCCATATTGTAAAGAAAGAAATGCACGCAATG 710
Query 718 ATGCCTCAGGAAAACCTTCTTTTCAGGGACGATTTATTGGGGAAGAGGCATTTATTCGTA 777
||||||||||||||||||||||||||||||| ||| | || ||| | |||||| ||||||
Sbjct 711 ATGCCTCAGGAAAACCTTCTTTTCAGGGACGGTTTGTAGGTGAAAAAGCATTTGTTCGTA 770
Query 778 TTGCTCCAGCTATTTCAGGCTTGGCTGATAGGGCTACTGTACATAACCTTTTCAAGGCTC 837
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TTGCTCCAGCAATTTCAGGCTTGGCTGATAGGGCTACTGTACATAACCTTTTCAAGGCTC 830
Query 838 TAGCTACTGCCACTGATCAAAAAGGCATTTCTTTGGAGATTTGGCTTGCTTACATCCAGG 897
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TAGCTGCTGCCACTGATCAAAAAGGCATTTCTTTGGAGATTTGGCTTGCTTACATCCAGG 890
Query 898 AACTTGTCAAAATACACGAGGGACGGAAGTCACACCAGACTACAGACTTTCCGCAGTTGT 957
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 891 AACTTGTCAAAATACACGAAGGACGGAAGTCACACCAGACTACAGACTTTCCAAAGTTGT 950
Query 958 CATCGGAGAGACTTTTATGCATGGCCGCCAACAGGAAAGGACCTGTTTTAAAGTGGGAGA 1017
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 951 TATCGGAGAGACTTTTATGCATGGCCTCTAACAGGAAAGGACCTGTTTTAAAGTGGGAGA 1010
Query 1018 ATAACGTTGCATGGCCTGGAAAACTTACTTTAACTGATAAAGCCCTCTATTTCGAGCCAG 1077
||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 1011 ATAACGTTGCATGGCCTGGAAAACTTACTCTAACTGATAAAGCTCTCTATTTTGAGCCAG 1070
Query 1078 TTGACATAAAAGGAAGTAAAGGGGTCTTGAGACTTGATCTCGCTGGAGACAAGTCAACAG 1137
||||| |||| |||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1071 TTGACTTAAAGGGAAGTAAAGGGGTCTTGAGACTTGATCTCGCAGGGGACAAGTCAACTG 1130
Query 1138 TGGAGAAAGCGAAAGTGGGGCCTCT-GGGCTTTTCTCTCTTTGATTCTGCAGTTTCTGTT 1196
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1131 TGGAGAAAGCGAAAGTGGGGCCTCTAGGG-TTTTCTCTCTTTGATTCTGCAGTTTCTGTT 1189
Query 1197 TCATCCGGCCCCGGGTTGGCCACTTGGGTTCTGGAGTTCGTTGACCTTGGAGGAGAACTT 1256
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1190 TCGTCCGGCCCTGGGTTGGCCACTTGGGTTCTGGAGTTCGTTGACCTAGGAGGTGAACTT 1249
Query 1257 AGACGAGATGTTTGGCATGCAATTATTAGTGAAGTTATAGCATTGCACACATTTCTACGA 1316
||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||
Sbjct 1250 AGACGAGATGTTTGGCATGCAATTATTAGTGAAGTTATAGCGTTGCACAAATTTTTACGA 1309
Query 1317 GAATTTGGGCCAGGAGAGGGTGATAAGTCGCTGTATCAAGTGTTTGGTGCAAAGAAGGGT 1376
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GAATTTGGGCCAGAAGAGGATGATAAGTCGCTGTATCAAGTGTTTGGTGCAAAGAAGGGT 1369
Query 1377 AAGGAAAAAGCAATTGCAAGTGCATCTAACTGTATTGCAAGACTTCAAGCTCTTCAATAT 1436
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AAGGAAAAGGCAGTTGCAAGTGCATCTAACTGTATTGCAAGACTTCAAGCTCTTCAATAT 1429
Query 1437 ATGCGGAATTTGCCTGATGATCCTATCAAACTAGTTCAGTTCTCTTTTCTTCAACAAGTA 1496
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1430 ATGCGGAATTTGCCTGATGATCCTATCAAAGTAGTTCAGTTCTCTTTTCTTCAACAAGTA 1489
Query 1497 GCCTATGGTGACATCGTGTGTCAAACTTTAGCCGTAAATTTTTGGGGTGGACCACTATTG 1556
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1490 GCCTATGGTGACATCGTGTGTCAAACTTTAGCTGTAAATTTTTGGGGTGGACCACTATTG 1549
Query 1557 ACCAAAGTTTCAGACA------A-A--CGAGGTGATATTGCCAGGGCTTCCAGAGAGTCC 1607
|||||| || |||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1550 ACCAAAATTGCAGACACGGTCTACAAACGAGGTGATATTGCCAGGGCTTCCAGAGAGTCC 1609
Query 1608 TATGAAACTTTTGATAACGTGTCTGATCTAGATGGAAGTGTTTACTTGAAAAGGTGGATG 1667
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1610 TATGAAACTTTTGATAACGTGTCTGATCTAGATGGAAGTGTCTACTTGAAAAGGTGGATG 1669
Query 1668 AGATCTCCTTCCTGGGGTTCAACTGCATCCATGAACTTCTGGAAAAACTCTTCTCTAAGA 1727
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1670 AGATCTCCCTCCTGGGGTTCAACTGCATCCATTAACTTCTGGAAAAACTCTTCTCTAAGA 1729
Query 1728 CAAGGCTTAGTTCTGAGCAAACACCTTGCGGTTGCTGATCTTACACTTGTAGAGAGGGCA 1787
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 1730 CAAGGCTTAGTTCTGAGCAAACACCTTGCAGTTGCTGATCTCACACTTGTAGAGAGAGCA 1789
Query 1788 ACAGAAACATGTAGACAAAAATACAAGGTGGTCGAAAAAACTCAAGCCACTATTGATGCT 1847
|||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1790 GCAGAAACATGTAGACAAAAATATAAGGTGGTAGAAAAAACTCAAGCCACAATTGATGCT 1849
Query 1848 GCAACTATCAAAGGGATACCTAGTAACATTGACCTCTTTAAGGAACTCATTCTACCACTG 1907
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1850 GCAACCATCAAAGGGATACCTAGTAACATTGATCTCTTTAAGGAACTCATTCTGCCACTG 1909
Query 1908 AGTATAACTGCCACAGAGTTTGAGAAACTCAGGTGCTGGGAGGAGCCTTACATGACGGTC 1967
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 AGTATAACTGCCACAAAGTTTGAGAAACTCAGGTGCTGGGAGGAGCCTTACATGACGGTC 1969
Query 1968 TCTTTTCTAGCATTTGCATCAACGATAATTTTCAGGAACCTTTTGCAGTACGTTCTTCCC 2027
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1970 TCTTTTCTAGCAGTTGCATCAACGATAATTTTCAGGAACCTTTTGCAGTACGTTTTTCCT 2029
Query 2028 GTGTCTTTGATATTTTTGGCAACTGGGATGCTTACGTTGAAGGGACTCAGACGACAAGGC 2087
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2030 GTGTCTTTGATATTTTTGGCTACTGGGATGCTTACGTTGAAGGGACTCAGACGACAAGGC 2089
Query 2088 CGTCTAGGAAGATTGTTTGGAATAATTAGCATTCGAGATCAGCCATCTTCAAATACTATT 2147
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 2090 CGTCTAGGAAGATTGTTTGGAATAGTTACCATTCGAGATCAGCCATCTTCAAATACTATT 2149
Query 2148 CAAAAAATAATTGCTGTCAAAGACGCCATGCAAAATCTGGAGAGCTATCTCCAAAAGGTG 2207
|||||||| |||||||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 2150 CAAAAAATTATTGCTGTAAAAGAAGCCATGCAAGATCTGGAGAGCTATCTCCAAAAGGTG 2209
Query 2208 AATGTAGTGCTTCTAAAACTACGGACAATTGTATTATCTGGTCATCCTCAGATAACTACT 2267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2210 AATGTAGTGCTTCTAAAACTACGGACAATTGTATTATCTGGTCATCCTCAGATAACTACT 2269
Query 2268 GAAGTAGCACTGGCTATGCTATCTATTGCAACGGTTCTAGTCATTGTCCCTTTCAAGTAT 2327
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2270 GAAGTAGCACTGGTTTTGCTATCTATTGCAACGGTTCTAGTCATTGTCCCTTTCAAGTAT 2329
Query 2328 GTTCTGGCTTTTGTTCTCTACGATCAATTTACTCGGGAGCTCGAGTTCCGGAAAGAAATG 2387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2330 GTTCTGGCTTTTGTTCTCTACGATCAATTTACTCGGGAGCTCGAGTTCCGGAAAGAAATG 2389
Query 2388 GTCAAGAAATTTAATGCTTTCTTACGGGAACGTTGGGAGATGGTACCAGCAGCTCCTGTC 2447
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2390 GTCAAGAAATTTAATGCTTTCTTACGGGAACGTTGGGAGATGGTACCGGCAGCTCCTGTC 2449
Query 2448 ATTGTTTTACCGTTTGTTAA-TGAAGAGTCTACACCAGCAACTCAGGAAAACAAGCAGCT 2506
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2450 ATTGTTTTACCGTTTGT-AAGTGAAGAGTCTACACCAGCAACTCAGGAAAACAAGCAGCT 2508
Query 2507 CAGAAAACCAACACCGAGAGGTGATTGATAAAAAGTGCCAAA-TTTGTATAATCTAGTGG 2565
|||||||| ||||| |||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 2509 CAGAAAACAAACACAGAGA--TGATTGATAAAGAGTGCCAAAATTTGTATAATCTAGTGG 2566
Query 2566 C-GTGTGCATGTTTTA-A--C--TAGAAGCTCAAGAAGGAACAAATATCAAATTGTAGTT 2619
| | |||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 2567 CAG-GTGCATGTTTTAGATACACTAGAAGCTCAAGAAGGAACAAATATCAAATTGTAGTT 2625
Query 2620 GACAATGATTCATTAAATGTATATGAAAAGTAGTATAGATGTTAGTT 2666
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2626 GACAATGATTCATTAAATGTATATGAAAAGTAGTATAGATGTTAGTT 2672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100939149250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5