BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71250.1
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908730 jgi|Araly1|908730|Al_scaffold_0002_1811 1685 0.0
> Ahg908730 jgi|Araly1|908730|Al_scaffold_0002_1811
Length=1125
Score = 1685 bits (912), Expect = 0.0
Identities = 1056/1127 (94%), Gaps = 4/1127 (0%)
Strand=Plus/Plus
Query 8 ATGAACACAAACAGAAAGAAGATGAAAGTCCATATTGGAGGATATGTGTTGATACTTGCC 67
|||||||||||| || ||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1 ATGAACACAAACGGACAGAAGATGAAAGTTCATATTGGAAGATATGTGTTGATACTTGCC 60
Query 68 TTGACGGTTTCTGTTATATTACAGCAGCCTGAGTTGGTCACTGGACAAGCTAGAGTTCCT 127
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GTGACGGCTTCTGTTATATTACAGCAGCCTGAGTTGGTCACCGGACAAGCTAGAGTTCCG 120
Query 128 GCTATGTTTGTACTTGGAGACTCATTGGTCGATGCTGGTAACAACAACTTTCTACAAACT 187
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 121 GCTATGTTTGTACTTGGAGACTCATTGGTCGATGCTGGGAACAACAACTTTATACAAACT 180
Query 188 GTAGCTCGAGCCAATTTCCTCCCTTATGGCATCGACATGAACTACCAG-CCTACTGGCAG 246
||||||||||||||||||| |||||||||||||| |||||| || | |||||||||||
Sbjct 181 CTAGCTCGAGCCAATTTCCTTCCTTATGGCATCGATTTGAACTTCC-GTCCTACTGGCAG 239
Query 247 ATTTAGCAACGGCCTGACTTTCATTGATCTGCTAGCTCGGTTGTTAGAAATTCCATCACC 306
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 240 ATTTAGCAACGGCCTGACTTTCATTGATCTGCTAGCTCAGTTGTTACAAATTCCATCGCC 299
Query 307 CCCTCCCTTCGCGGATCCAACCACATCAGGCAATAGAATCCTCCAAGGAGTTAACTACGC 366
||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 300 TCCTGCCTTTGCGGATCCAACCACATCAGGCAGTAGAATCCTCCAAGGAGTTAATTACGC 359
Query 367 GTCTGCAGCTGCTGGCATCCTCGATGTATCAGGCTACAACTATGGTGGAAGATTCAGCCT 426
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 360 GTCTGCAGCTGCTGGCATCCTCGATGAATCAGGCTTCAACTATGGTGGAAGATTCAGCCT 419
Query 427 GAACCAGCAAATGGTGAATCTAGAGACGACACTAAGCCAACTGCGAACGATGATGAGTCC 486
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 420 GAGCCAGCAAATGGTGAATCTAGAGACGACACTAAGCCAACTGAGAACGATGATGAGCCC 479
Query 487 CCAAAACTTTACGGATTACTTAGCAAGGTCGCTTGTGGTTCTCGTTTTTGGAAGCAATGA 546
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct 480 CCAAAATTTTACGGATTACTTGGCAAGATCACTTGTGGTTCTCGTTTTTGGGAGCAATGA 539
Query 547 CTATATCAACAACTACCTTATGCCTAATCTCTACGATTCCAGCATAAGATTCAGACCACC 606
||||||||||||||||||||||||||||||||| |||||||| |||| || ||| ||
Sbjct 540 TTATATCAACAACTACCTTATGCCTAATCTCTACTCCTCCAGCATCAGATACACACCGCC 599
Query 607 TGACTTTGCCAATCTACTTCTCAGTCAATACGCTCGCCAGCTTCTGACTCTTTACAGCCT 666
|| |||||||||||||||||||||||||||||||| || ||||| ||||| ||| ||||
Sbjct 600 TGTGTTTGCCAATCTACTTCTCAGTCAATACGCTCGTCAACTTCTTACTCTGTACGGCCT 659
Query 667 AGGTCTAAGAAAAATATTTATACCTGGAGTAGCACCACTAGGCTGCATACCAAACCAACG 726
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGTCTAAGAAAGATATTTATACCTGGAGTAGCACCACTAGGCTGCATACCAAACCAACG 719
Query 727 AGCCAGAGGTATCTCGCCACCTGATAGATGTGTTGACAGCGTGAATCAGATTCTAGGCAC 786
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 AGCCAGAGGTGTTTCGCCACCTGATAGATGTGTTGACAGTGTGAATCAGATTCTAGGCAC 779
Query 787 ATTTAACCAAGGGCTAAAGTCACTTGTTGATCAGCTGAACCAGCGATCACCTGGAGCCAT 846
||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||||||||
Sbjct 780 ATTTAACCAAGGGTTAAGGTCACTTGTTGACCAGCTGAACCAGCGATTACCTGGAGCCAT 839
Query 847 CTATGTATACGGCAACACCTATAGCGCAATTGGTGACATCTTAAACAACCCAGCTGCTTA 906
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 ATATGTATACGGCAACACATATAGCGCAATTGGTGATATCTTAAACAACCCAGCTGCTTA 899
Query 907 CGGATTTAGCGTAGTAGACAGGGCTTGTTGCGGGATTGGGAGGAACCAAGGACAAATTAC 966
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 900 CGGATTTAGCGTAGTGGACAGGGCTTGTTGCGGGATTGGGAGGAACCAGGGACAAATCAC 959
Query 967 ATGTCTG-CCGTTGCAGACTCCTTGTCCCAACAGAAATCAGTATGTCTTTTGGGATGCAT 1025
||||||| ||| ||| | ||||||||||||||| | |||||||||||||||||||||||
Sbjct 960 ATGTCTGCCCG-GGCAAAATCCTTGTCCCAACAGGAGTCAGTATGTCTTTTGGGATGCAT 1018
Query 1026 TCCATCCTACTCAGACTGCTAACTCCATTCTGGCTAGACGAGCTTTCTATGGTCCACCTT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCCATCCTACTCAGACTGCTAACTCCATTCTGGCTAGACGAGCTTTCTATGGTCCACCTT 1078
Query 1086 CCGACGCATATCCTGTCAATGTCCAACAGATGACACTCCTTCACTAG 1132
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CCGACGCATATCCTGTCAATGTCCAACAGATGACACTCCTTCACTAG 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47691769167
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5