BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71260.1
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926477 jgi|Araly1|926477|scaffold_202038.1 1123 0.0
> Ahg926477 jgi|Araly1|926477|scaffold_202038.1
Length=770
Score = 1123 bits (608), Expect = 0.0
Identities = 710/757 (94%), Gaps = 15/757 (2%)
Strand=Plus/Plus
Query 27 AGAAGATGATGAAGCAAGCCCGCTCTTTGCTCTCCAGGAGCCTTTGTGACCAAAGTAAGT 86
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 16 AGAAGATGATGAAGCAAGTTCGCACTTTGCTCTCCAGGAGCCTTTGTGACCAAAGTAAGT 75
Query 87 CACTTTTC---------G---AAGCTTCGACGTTGCGTGGTTTTGCAAGCTGGTCAAATT 134
|||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 76 CACTTTTCGAAGAGAGAGTTAAAGCTTCGACGTTGCGTGGTTTTGCAAGCTGGTCAAGTT 135
Query 135 CTTCAACCCCTGGACGTGGATTCCCTGGTAAAGATGC-CGCAAAGCCTAGTGGTCGATTG 193
|||| || ||||||||||| ||| ||||||||||||| | ||||||||||||||||||||
Sbjct 136 CTTCTACGCCTGGACGTGGTTTCTCTGGTAAAGATGCTC-CAAAGCCTAGTGGTCGATTG 194
Query 194 TTCGCACCTTATTCTATCTTCAAAGGAAAAGCTGCTCTCTCTGTTGAACCTGTTCTTCCC 253
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 195 TTCGCACCTTATTCTATTTTCAAGGGAAAAGCTGCTCTCTCTGTTGAACCTGTTCTTCCC 254
Query 254 AGTTTCACTGAAATCGATTCGGGAAATCTTCGGATAGATCGTCGTGGATCCTTAATGATG 313
| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 255 ACTTTCACCGAAATCGATTCGGGAAATCTTCGGATAGATCGTCGTGGATCCTTGATGATG 314
Query 314 ACTTTTATGCCTGCTATTGGTGAGCGTAAGTACGACTGGGAAAAGAAACAGAAATTTGCT 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 ACTTTTATGCCTGCTATTGGTGAGCGTAAGTACGACTGGGAAAAGAAACAGAAATTTGCT 374
Query 374 TTGTCACCTACTGAAGTTGGATCCTTAATTAGCATGGGTTCCAAAGACAGCTCCGAGTTT 433
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 375 TTGTCACCTACGGAAGTTGGATCCTTGATTAGCATGGGTTCCAAAGACAGCTCTGAGTTT 434
Query 434 TTCCATGACCCTTCCATGAAATCAAGTAATGCTGGTCAAGTCAGGAAGTCACTGTCAGTT 493
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 435 TTCCATGACCCTTCCATGAAATCAAGTAATGCTGGTCAAGTCAGGAAGTCATTGTCAATT 494
Query 494 AAGCCCCACGCAGATGGTAGCGGCTACTTCATCTCATTGAGCGTTAACAATAGCATCCTC 553
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 495 AAGCCCCACGCAGATGGTAGCGGCTACTTCATCTCGTTGAGCGTAAACAATAGCATCCTC 554
Query 554 AAAACCAATGACTATTTTGTGGTTCCTGTCACAAAAGCTGAATTTGCAGTGATGAAGACA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 AAAACCAATGACTATTTTGTGGTTCCTGTCACAAAAGCTGAATTTGCAGTGATGAAGACA 614
Query 614 GCTTTTAGTTTTGCTCTTCCACACATCATGGGTTGGAATCGGTTAACTGGTCACGTTAAT 673
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 615 GCTTTTAGTTTTGCCCTTCCACACATCATGGGTTGGAATCGGTTAACAGGTCAAGGTAAT 674
Query 674 ACTGAAGCTCTGCCGTCGAGGAATGTTTCTCATCTAAAGACTGAACCACAGTTAGAGCTG 733
|||||||| ||||| |||||||| || ||||||||||||| || |||||||||||||||
Sbjct 675 ACTGAAGCGCTGCCACCGAGGAATCTTACTCATCTAAAGACCGATCCACAGTTAGAGCTG 734
Query 734 GAGTGGGATAAATGAAATGATGAGAGTAGTAGGAACG 770
|||||||||||||||| ||||| ||||||||||||||
Sbjct 735 GAGTGGGATAAATGAACTGATG-GAGTAGTAGGAACG 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34882469055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5