BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G71310.2

Length=962
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919120 jgi|Araly1|919120|scaffold_100401.1                        291    9e-78


> Ahg919120 jgi|Araly1|919120|scaffold_100401.1
Length=581

 Score =  291 bits (157),  Expect = 9e-78
 Identities = 185/199 (93%), Gaps = 0/199 (0%)
 Strand=Plus/Plus

Query  160  GAATTTTGTCCGGCGACAGAAATGGCGGGGTTAGGGTTACGGCTAAAGGCGGCAAAATGG  219
            |||||||| |||||||  | ||||||||||||||||||||||||||||||||| ||||||
Sbjct  1    GAATTTTGACCGGCGATTGTAATGGCGGGGTTAGGGTTACGGCTAAAGGCGGCGAAATGG  60

Query  220  ACGTTGAGGAGCGGATCAGGTGCTGTATCGAGAGAATGGTCGTCGGAGATGGGGAAAGGT  279
            | ||||||||||||| ||| | |||||||||| | ||||||||||||||||||||| |||
Sbjct  61   ATGTTGAGGAGCGGAGCAGCTACTGTATCGAGGGGATGGTCGTCGGAGATGGGGAAGGGT  120

Query  280  GTTCGTCGATTCTCTACTGAAACAGAGAACGATGTTCCAACTTCAGGAATCAGTAGACCA  339
            |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTTCGTCGCTTCTCTACTGAACCAGAGAACGATGTTCCAACTTCAGGAATCAGTAGACCA  180

Query  340  CTCGCTGAGATTCTCAAGG  358
            |||||||||||||||||||
Sbjct  181  CTCGCTGAGATTCTCAAGG  199



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35721173229


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5