BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71340.1
Length=2390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316118 jgi|Araly1|316118|fgenesh1_pm.C_scaffold_2001151 1482 0.0
Ahg904204 jgi|Araly1|904204|Al_scaffold_0003_1332 226 6e-58
> Ahg316118 jgi|Araly1|316118|fgenesh1_pm.C_scaffold_2001151
Length=990
Score = 1482 bits (802), Expect = 0.0
Identities = 930/992 (94%), Gaps = 7/992 (1%)
Strand=Plus/Plus
Query 1018 ATGGCGATTTTTGAAT---GGCGGCACAGAAGACGGCCATTCGACGGCGGAGGAACTCGT 1074
||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct 1 ATGGCGATTATTGAATGGCGGCGGCAGAGAAGACGGCCACTCGACGGCGGAGGAACTCGC 60
Query 1075 CGCCGTCGT-TTCTTCAGCCCATTGTATTCGAGAAATTTCAAGAGAACGATTCTCTTCGC 1133
||||||| | |||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 61 CGCCGTC-TATTCTTCAGGCCATTGTATTCGAGAAATTTCAAGAGAACAATTCTATTCGC 119
Query 1134 TGTGATTTTCTTAGCTATCTTCCCTCCTCTCTACTTCCATTTCAAGCTCCGACGAATTCG 1193
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGTGGCCTTCTTAGCCATCTTCCCTCCTCTCTACTTCCATTTCAAGCTCCGACGAATTCG 179
Query 1194 TCAGATTGTCGCGCAAAAGTGCGATTGGCTTCACCATCCTCCACTTGTCTGTGCTCACGG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCAGATTGTCGCGCAAAAGTGCGATTGGCTTCACCATCCTCCACTTGTCTGTGCTCACGG 239
Query 1254 CGGCGATTCCACCCTCGCTTTCCCAAACACTATGGACGCTTACAGTTTCGCTATACGTTC 1313
||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 240 CGGCGATTCAACTCTCGCTTTCCCCAACACTATGGATGCTTACAGTTTCGCTATACGTTC 299
Query 1314 TCGAGTTGATTGCATTGAAGTCGATGTTTCTCGTTCCTCCGATGGTGTTTTATTCGCTCT 1373
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 300 TCGAGTTGATTGCATCGAAGTAGATGTTTCTCGATCCTCCGATGGTGTTTTATTCGCTCT 359
Query 1374 TCACAACAGGGATCTGCAGCGTATTGCTCGTAACTCTTCTGTTCAAGTTGGAGATCTGAG 1433
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCACAACAGGGATCTGCAGCGTATTGCTCGTAACTCTTCTGTTCAAGTTGGAGATCTGAG 419
Query 1434 TATGAAACAGATCAAGGAACTCGATGTCTCGGAGATTGTTAAAGGAACCTTGGGAAGTAG 1493
|||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 420 TATGAAACAGATTAAGGAACTTGATATCTCGGAGATTGTTAAAGGAACCTTGGGAAATAG 479
Query 1494 TAGGATTCCTACTCTTGAAGAGGCTTTAGCGTTGATATCGAATTCAGTCCGGAAAGTGAT 1553
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TAGGATTCCTACTCTTGAAGATGCTTTAGCGTTGATATCGAATTCCGTCCGGAAAGTGAT 539
Query 1554 CCTTGATGCCAAAGTTGGACCGCCAATGTATGAAAAGGGG-TTAGCACAAGACATCCTTT 1612
|||||||| |||||||||||||||| |||||||||||| || ||||||||||| ||||
Sbjct 540 TCTTGATGCGAAAGTTGGACCGCCAACGTATGAAAAGGGCCTT-GCACAAGACATTCTTT 598
Query 1613 CTATTATTGAGAGAGCGCAGTGCAATAATTGCATCGTATGGGCCAAAAGCGACACTTTGG 1672
|| |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 599 CTGTTATTGAGAGAGCGCAGTGCAAGAACTGCATCGTATGGGCCAAAAGTGACACTTTGG 658
Query 1673 CTAGGGACATAATTAGACGAGCACCAGATACTATGGTGGGATACATTGTGATGGTAGATC 1732
|||| |||||||| || | |||||||||||||| || ||||||||||||||||| ||||
Sbjct 659 CTAGAGACATAATCAGGCAAGCACCAGATACTACAGTAGGATACATTGTGATGGTGGATC 718
Query 1733 CTTTGACTGGGGCGAGAAACAGCCTGCTGAGAATGAAGGGAGCTAGGGTTGTGGGAGTTT 1792
||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 719 CTTCGACTGGGGTGAGAAACAACCTGCTGAGAATGAAGGGAGCTAGGGTTGTGGGAGTCT 778
Query 1793 ATCATCCCTTGATCGATGAAGAATTAGTTAGAGTTGTCCGTCGGAGAAACAAAGAGGTGT 1852
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 779 ATCATCCCTTGATCGATGAAGAATTAGTTAGAGTTGTGCGTCGGAGAAACAAAGATGTTT 838
Query 1853 ATGCATGGACTGTGGATGATGCTGATCCCATGAAAAGGATGCTTCACTTAGGTGTGGATG 1912
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 839 ACGCATGGACTGTGGATGATGCTGATCCGATGAAAAGGATGCTTCACTTAGGTGTGGATG 898
Query 1913 CTGTTGTGACGAGCGATCCATCTATGTTTCAGGGTCTCATGGAAGATCTTAGAACTGAGT 1972
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTGTTGTTACGAGTGATCCATCTATGTTTCAGGGTCTCATGGAAGATCTTAGAACTGAGT 958
Query 1973 GTCTTGAAGAAGGTTTTTCAATACGGACGTGA 2004
||||||||||||| |||||||||||||| |||
Sbjct 959 GTCTTGAAGAAGGCTTTTCAATACGGACATGA 990
> Ahg904204 jgi|Araly1|904204|Al_scaffold_0003_1332
Length=4392
Score = 226 bits (122), Expect = 6e-58
Identities = 171/194 (88%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 2139 GACGAGTCTTTCTCAAGAAAAGCAAAGTATGGCCGGTTCTTGATGAAGCCATTGCTTCTA 2198
|||||||||| ||||||| ||||||| ||| ||||||||||||||||| ||||||||
Sbjct 4091 GACGAGTCTTGCTCAAGAGAAGCAAACTAT---TGGTTCTTGATGAAGCCACTGCTTCTA 4147
Query 2199 TCGATACAGCTACTGATAATCTGATCCAGGAGACTCTGAGGCAACACTTTTCGGACTGCA 2258
||||||| ||||||||||||||||||||||||||||||||||| |||||| | || ||||
Sbjct 4148 TCGATACCGCTACTGATAATCTGATCCAGGAGACTCTGAGGCACCACTTTGCTGATTGCA 4207
Query 2259 CAGTGAAAACAATCTCACACAGA-TATCTTCTTTTATACATAACGATATGAG-CCTGCTC 2316
|||||| ||||||| |||||||| |||||||| ||||| | | ||||||| | |||||||
Sbjct 4208 CAGTGATAACAATCGCACACAGAATATCTTCTGTTATAGACAGCGATATG-GTCCTGCTC 4266
Query 2317 CTAGAACAAGGTCT 2330
||||| ||||||||
Sbjct 4267 CTAGACCAAGGTCT 4280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90045339180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5