BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71350.1
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926497 jgi|Araly1|926497|scaffold_202058.1 2699 0.0
> Ahg926497 jgi|Araly1|926497|scaffold_202058.1
Length=1852
Score = 2699 bits (1461), Expect = 0.0
Identities = 1732/1859 (93%), Gaps = 33/1859 (2%)
Strand=Plus/Plus
Query 3 GACGACTACAAGCGAACATAATGTTTAAGAAGGCGGTGGAGGCTAAGTCTCACCAGCGTC 62
||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 2 GAC-ACTACAGGCGAACAGAATGTTCAAGAAGGCGGTGGAGGCTAAGTCTCACCAGCGTC 60
Query 63 TCTCCGGCGCTGACCGGAAAAAACTCCGTCGCACCGTCCGAAATAGGCTTCCCCTTCTTA 122
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 61 TCTCCGGCGCTGACCGGAAAAAACTCCGCCGCACCGTCCGAAATAGGCTTCCCCTTCTAA 120
Query 123 CCGATGAACTCCTCGACGCAATTCTTCCTCCCAAGGTCGAGATTACACTTTCCAAGTTTC 182
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 121 CCGATGAACTCCTCGACGCAATCCTTCCTCCCAAGGTCGAGATAACTCTTTCCAAGTTTC 180
Query 183 AGAATCGAGTTATTGTTTATAGTATTGAAGGTGGATGTCCCATGTTTTTCGATATCGATG 242
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAATCGAGTTCTTGTCTATAGTATTGAAGGTGGATGTCCCATGTTTTTCGATATCGATG 240
Query 243 GAAGAGGAACTGAGATTTTCCCCACAGTTTTTGCTCTGTGGGAGGCTCCTGAAATGTTAC 302
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GAAGAGGGACTGAGATATTCCCCACAGTTTTTGCTCTCTGGGAGGCTCCTGAAATGTTAC 300
Query 303 CTTCCTTTATGTTGAAAGGAGGTGAGGTTTCACGTTATATTATAGGCGGTGCAGATTTGA 362
|||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 301 CTTCCTTTATGTTGAAAGGAGGTGAGGTTTCACGGTATGTTTTAGGCGGTGCAGATTTGA 360
Query 363 TGTTCCCAGGTATTTTGATCCCTCCCCAAGGCTATCCTTCTTTCTCTGCTGGAGAAATAT 422
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 TGTTCCCAGGTATTTTGATCCCTCCCCAAGGCTTTCCTTCTTTCTCTGCTGGAGAAATAT 420
Query 423 GGGCTGTCAAAGTTCCTGGAAATCTAGCACCTATTGCGGTTGGGTGTACCACAATGAGTA 482
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 421 GGGCTGTCAAAGTTCCTGGAAATCTGGCACCTATTGCGGTTGGGTGTACTACAATGAGTA 480
Query 483 GTGAAGAAGCTCGTAAAGCAGGTTTACGTGGGAAGGCTTTAAGGATAACTCATTATTACC 542
|||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 481 GTGAAGAAGCCCTTAAAGCAGGTTTGCGTGGGAAGGCTTTACGGATAACTCATTATTACC 540
Query 543 GTGACTTCCTATGGGAATCAGCTGAGGGGCATTATGTTCCAAATGCGGGGTTTATGGAGG 602
|||||||||| |||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 541 GTGACTTCCTTTGGGAATCAGCTGAGGGGCACTACGTTCCAAATGCTGGTTTTATGGAGA 600
Query 603 ATGTGGTCATGGAGGACCCATCGTACCTTGCTCCTGGTTCAGGTGAAGATATTTTAGA-- 660
|||| ||||||||||||||||||||||||||| ||||||||| |||||| || | |||
Sbjct 601 ATGTTGTCATGGAGGACCCATCGTACCTTGCTTCTGGTTCAGTTGAAGAAATCTCAGACT 660
Query 661 ---CA-CT--T-CT--G-CAAGCACCGGAAATGAAGAAGATGAATCTGCT-CTG-G-A-A 706
|| || | || | |||||| | ||||| ||||||||||||| | || | | |
Sbjct 661 CTTCAGCTGGTCCTCAGACAAGCA-CAGAAAT--TGAAGATGAATCTGGTGATGTGAATA 717
Query 707 ACA----G-CTTCAACATCGGCTGCGGATGCTAAGAATGATGCTGAAGTACATGTCGTTG 761
| | | ||||||| || | | ||||||||||||||||| |||||| |||||| ||||
Sbjct 718 ATATTGGGCCTTCAACCTCTGTTACGGATGCTAAGAATGATACTGAAGAACATGTGGTTG 777
Query 762 GGAGCATGAATGAGCT-ATACTTGGTAGATGATGTATGTGCTACTGAAACTAATACCGAC 820
|||||||||||||||| | |||| | |||||| || | ||||| |||| | |||||||||
Sbjct 778 GGAGCATGAATGAGCTGA-ACTTAGCAGATGACGTTTCTGCTAATGAAGCAAATACCGAC 836
Query 821 AAGCAGATTACTCTCTCCCCTGAGGAGGTAGATACCCTTCTTGACCAATGTCTTTTGCAA 880
||||||| || ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 837 AAGCAGAATATTCTGTCCCCTGAGGAGGTAGATACCCTTCTTGACCAATGCCTTTTGCAA 896
Query 881 GCATTGCATACAACACTAAAGGAGAAA-GACCTTCCCATCCCAGGAAGCACTCTATGGGC 939
||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| |||||
Sbjct 897 GCATTGCATACAACACTAAAGGA-AAAGGACCTTCCCATCCCAGGAAGTACTCTGTGGGC 955
Query 940 AAATCATGTATTACCTTGTAGGCCTTCTGGTCTCACACTTGACATTAAGAAGTCTTCCCA 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AAATCATGTATTACCTTGTAGGCCTTCTGGTCTCACACTTGACATTAAGAAGTCTTCCCA 1015
Query 1000 TAAAAAGTTGTCAAAGTGGCTGCAATCTAAAGCGTCTGGTGGAATGATATCTGTTAAGGA 1059
||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| ||
Sbjct 1016 TAAAAAGCTGTCAAAGTGGCTGCAATCTAAAGCCTCTACTGGAATGATATCTGTTAAAGA 1075
Query 1060 AGACAAGCATAAGAAGGAGATAGTATTGATTTCAGTCAACCGCAGCCACCCAGATTACAA 1119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AGACAAGCATAAGAAGGAGATTGTATTGATTTCAGTCAACCGCAGCCACCCAGATTACAA 1135
Query 1120 ATCCTTCAAGCCAGAGAAAAAGAAAGCGGAAGTCTCCGAGTCTCCTGGAGAGCGCTCCAC 1179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1136 ATCCTTCAAGCCAGAGAAAAAGAAAGCGGAAGTCTCTGAGTCTCCTGGAGAGCGCTCCAC 1195
Query 1180 -GGCGCAAGCTCAGTCAGAGAAAGGGCTTGAAATTATAGAGGTCTATAAATCAAGCATAC 1238
|| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||
Sbjct 1196 AGG-GCAAGCTCAGTCAGAGAAAATGCTTGAAATCATAGAGGTCTATAAACCAAGCATAC 1254
Query 1239 ACAATAGTGCAATATTTGCATCAGTTGGGGAAGACAAAGGAAATCTGTACACAGCTTCTG 1298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ACAACAGTGCAATATTTGCATCAGTTGGGGAAGACAAAGGAAATCTGTACACAGCTTCTG 1314
Query 1299 AAGCCACTGACGTTGTGTTCAAATACATTGAGAAGGAAAATCTAGTAAAGCCAACAAACA 1358
|||||||||| |||||||||| |||||| |||||||||||||| ||||||||| ||||||
Sbjct 1315 AAGCCACTGATGTTGTGTTCAGATACATCGAGAAGGAAAATCTGGTAAAGCCAGCAAACA 1374
Query 1359 AATCAATGGTGGTGTTGGATCCGATACTATGTGATGCATTGTTCAAAGGAGCTATCAAAA 1418
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1375 AGTCAATGGTGGTGTTGGATCCGATATTATGTGATGCATTGTTCAAAGGAGCTATCAAAA 1434
Query 1419 AGGGATCGGCATATCCGTCAGAGATCCACAAAAAGGATGTTGGGTCGACATTTGTAGGTA 1478
||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 1435 AGGGATCGGCATATCCGTCAGAGATTCACAAAAAGGATGTTGGATCGACGTTTGTAGGGA 1494
Query 1479 GAATGCAGCCTAATCACGTAGTGATGAGAGGAGGCGGTGAACCCGTGGTTCGTAAAGGAG 1538
| |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1495 GGATGCAGCCTAATCACGTAGTCATGAGAGGCGGTGGTGAACCCGTGGTTCGTAAAGGAG 1554
Query 1539 CTGTAAAGCCGGTTCAGATAATGACAGAACGAAGACAAGGTAACAAAAAAGTGACCAAGG 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1555 CTGTAAAGCCGGTTCAGATAATGACAGAACGAAGACAAGGTAACAAAAAAGTGACAAAGG 1614
Query 1599 TCACAGGGATGGAGACGTTCTTGATAGACCCAGACTCGTTTGGATCAGAACTGCAGAAGA 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TCACAGGGATGGAGACGTTCTTGATAGACCCAGACTCGTTTGGATCAGAACTGCAGAAGA 1674
Query 1659 AGTTTGCTTGCAGTACTTCAGTTGGAGAACTTCCAGGTAAGAAAGGGTACGAGGTTCTGA 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 AGTTTGCTTGCAGTACTTCAGTTGGAGAACTTCCAGGTAAGAAAGGGTACGAGGTTCTGA 1734
Query 1719 TTCAAGGAGGTGTGATTGATAACCTTGCGAGATATATGGTGGAACACTATGGAGTTCCAA 1778
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1735 TTCAAGGAGGTGTGATTGATAATCTTGCGAGATATATGGTGGAACACTATGGAGTTCCAA 1794
Query 1779 AGAGATACATCGAAGTTCTTGATAAGACTAG-AAAGTGAATGGttttttctatttcatt 1836
|||||||||| |||||||||||||||||||| ||| ||| | ||||||||| |||||||
Sbjct 1795 AGAGATACATTGAAGTTCTTGATAAGACTAGGAAA-TGATTTGTTTTTTCTTTTTCATT 1852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72638097215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5