BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71370.1
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926536 jgi|Araly1|926536|scaffold_202097.1 1757 0.0
Ahg939971 jgi|Araly1|939971|scaffold_600515.1 957 0.0
> Ahg926536 jgi|Araly1|926536|scaffold_202097.1
Length=1746
Score = 1757 bits (951), Expect = 0.0
Identities = 1138/1227 (93%), Gaps = 18/1227 (1%)
Strand=Plus/Plus
Query 609 AAGCAGGTCAATTACATTATATCTCGCTTGCCAAAGCAACGTAGGACTGGCCTCTTTTCA 668
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 533 AAGCAGGTCAATTACATTATATCTCGCTTGCCAAAGCAACGGAGGACTGGCCTCTTTTCA 592
Query 669 GCTACACAAACACAAGCTGTTGCAGACCTGGCCAAGGCTGGCCTTAGGAATGCT-ATGGA 727
|||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||| | | |
Sbjct 593 GCTACACAAACAGAAGCTGTTGAAGAGCTGGCCAAGGCTGGCCTTAGGAACGCTGA-GAA 651
Query 728 AGTTATATCGGGAGCTGAGTCAAAGTCGAAAACGTCTTCTGGTCTGTATTGTGAGTATTT 787
|||||||| | |||||||||| | |||||| |||||||||||||| ||||||||||
Sbjct 652 AGTTATATTGCGAGCTGAGTC--A----AAAACGCCTTCTGGTCTGTATAGTGAGTATTT 705
Query 788 AAAATGCGAAGCAGATCAAAAGTCATCACAACTAGTGCATCTCCTGATCGAGAACAAAAA 847
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 706 GAAATGCGAAGCAGATAAAAAGTCATCACAACTAGTGGATCTCCTGATCGAGAACAAAAA 765
Query 848 TAAAAAGCTTGTCGTATTCTTCATGACATGTGCTTGTGTTGATTACTGGGGACTCGTACT 907
|||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 766 TAAAAAGCTTCTCGTATTCTTTATGACCTGTGCTTCTGTTGATTACTGGGGACTCGTACT 825
Query 908 TTCAAAAATTCCTACCCTCAAGTCCATTTCCTTCTTTTCC-ACCCATGGGAAGATGGATC 966
|||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||
Sbjct 826 TTCAAAAATTCCTACCCTCAAGTCCATTTCCTTC-TTTCCTATCCATGGGAAGATGAATC 884
Query 967 AGAAAGGTAG-AGACACGGCATTAGCTTCGTTTACAGAGGCATCAAGCGGTGTCCTTCTA 1025
||| | | | || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 AGACTGCTCGAAG-CAAGGCATTAGCTTCGTTTACAGAGGCATCAAGCGGTGTCCTTCTA 943
Query 1026 TGCACAGATGTCGCTGCACGTGGACTTGACATTCCAGGCATCGATTACGTTGTTCAGTAT 1085
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 944 TGCACAGATGTCGCTGCACGAGGACTTGATATTCCAGGCATCGATTACGTTGTTCAGTAT 1003
Query 1086 GATCCCCCACAAGACCCAGATGTATTTATCCATAGGGTTGGCAGGACTGCAAGAATGGAA 1145
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1004 GATCCCCCACAAGACCCAGCTGTATTTATCCATAGGGTTGGCAGGACTGCAAGACTGGAA 1063
Query 1146 AGACAAGGTAGGGCCATTGTGTTTTTAATGCCCAAGGAGACAGACTATGTAGAGTTCATG 1205
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1064 AGACAAGGGAGGGCCATTGTGTTTTTAATGCCCAAGGAGAAAGACTATGTAGAGTTTATG 1123
Query 1206 CGCATTCGAAGGGTCCCTCTTCAGGAGAGAAAATGCTCTGAGAACGCTTCTGATGTCATC 1265
||||| ||| | |||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1124 CGCATAAGAAAAGCCCCTCTTCAGAAGAGAAAATGCTCTGAGAACGCTTCCGATGTCATC 1183
Query 1266 CCGATTATACGTTCACTAGCCATCAAGGACCGGGCAGTGTTGGAGAAGGGATTACAGGCA 1325
||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct 1184 CCGATTATACGTTCACTAGCCATGAAGGACCGGGAAGTGTTGGAGAAGGGATTAAAGGCA 1243
Query 1326 TTTGTTTCCTTTGTCCGTGCTTATAAGGAGCATCACTGCTCTTACATTTTCAGTTGGAAA 1385
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1244 TTTGTTTCCTTTGTCCGTGCTTATAAGGAGCATCACTGCTCTTTCATTTTCAGTTGGAAA 1303
Query 1386 GGACTTGAAATCGGAAAGTTAGCCATGGGATATGGCATCTTGTCTTTTCCTTACA-TATC 1444
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1304 GGACTTGAAATCGGAAAGTTAGCCATGGGATATGGCATCTTGTCTTTTCCTT-CAATATC 1362
Query 1445 TGAAGTTAAACAAGACAGAATTGGCATTGTCGGTTTTACACCTGTCCAAGGCATCACGTT 1504
|||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 1363 TGAAGTTATACAAGACAGACTTGACATTGTCGGTTTTACACCTGTCGAAGGCATCACGTT 1422
Query 1505 TGAGGACATAAAATACAAGAACAAATCTCGGGAGAAACAAAGACAGCAAAACTTACTAGC 1564
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 TGAGGACATAAAATTCAAGAACAAATCTCGGGAGAAACAAAGACAGCAAAACTTACTAGC 1482
Query 1565 AAGGAAAGACAAACTGCAACAAGAAAAGAGAGGGAAACGCAAGAAAAGCTCCA-AAGAGG 1623
||||||||| |||||||||||||||||||||| |||| |||||||||| | || |||
Sbjct 1483 AAGGAAAGAAAAACTGCAACAAGAAAAGAGAGAGAAAGGCAAGAAAAGAGAGAGAA-AGG 1541
Query 1624 CGGTTGATGATTCTAACAAAGCGTCGAGAAAGAGAAAGTTAACGGGGAGGCAAAGACAAA 1683
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1542 CGGTTGATGATTCTAACAAAGTGTCGAGAAAGAGAAAGTTAACGAAGAGGCAAAGACAAA 1601
Query 1684 CTATCCAAACAGCGCAAGATGAAGAAGAAATGAATTTGAGATTATAGCTTACTGGAAAAA 1743
||||||||||||| | |||||||||||||| |||| |||||||| | |||||| |||||
Sbjct 1602 CTATCCAAACAGCTCGAGATGAAGAAGAAACGAATG-GAGATTATGGGTTACTGAAAAAA 1660
Query 1744 CTGAAGAAAGGCTCAATTATAGAAGATGATTTTGCTAAACTTACAGGAGCTCATGATTTT 1803
||||||||||| ||||||| ||||||||| ||||| |||| |||||||||| ||||||||
Sbjct 1661 CTGAAGAAAGGTTCAATTACAGAAGATGAATTTGCAAAACGTACAGGAGCTGATGATTTT 1720
Query 1804 GTCTGATAAAGAAGCAAGAAAACATTT 1830
||||||||| ||||||||||||| |||
Sbjct 1721 GTCTGATAA-GAAGCAAGAAAACCTTT 1746
Score = 697 bits (377), Expect = 0.0
Identities = 419/440 (95%), Gaps = 0/440 (0%)
Strand=Plus/Plus
Query 88 CTCTGCCGCGTTTCTCTGAACTCAAACCTCCGCTCTCAGAAGATATCATCGAGGCGCTTG 147
||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 81 CTCCGCCGCGTTTCTCTGAACTCGAACCTCCGCTCTCCGAAGATATCATCGAGGCGCTTG 140
Query 148 ACCGGTCCGGTTTCGAGGTCTGCACTCCGGTTCAGGCCGAGACGATCCCTTTCCTCTGCA 207
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 141 ACCGGTCCGGTTTCGAGTTCTGCACTCCGGTTCAGGCCGAGACGATCCCTTTACTCTGCA 200
Query 208 GCCACAAGGATGTTGTCGTCGACGCAGCCACTGGTTCTGGAAAAACCCTAGCTTTCCTCC 267
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 201 GCCACAAGGATGTTGTCGTCGACGCAGCAACTGGTTCTGGAAAAACCCTAGCTTTCCTCC 260
Query 268 TTCCCTTCATAGAGATTATCCGTCGATCCAACTCCTACCCTCCGAAGCCACACCAGGTAA 327
||||| || |||||||| |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 261 TTCCCCTCGTAGAGATTCTCCGTCGATCGAACTCCTACCCTCCGAAGCCACACCAGGTTA 320
Query 328 TGGGGGTGATTATATCGCCAACTAGAGAGCTATCAGCGCAGATACATAAGGTGGCAGAGC 387
| |||||||| ||||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 321 TAGGGGTGATAATATCGCCAACGAGAGAGCTATCAACGCAGATACATAAGGTGGCACAGC 380
Query 388 CATTTGTCTCGACTTTGCCAAATGTGAACTCTGTCCTGCTTGTTGGAGGTCGAGAGGTGG 447
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CGTTTGTCTCGACTTTGCCAAATGTGAACTCTGTCCTGCTTGTTGGAGGTCGAGAGGTGG 440
Query 448 AAGCTGACATGAATACTCTCGAAGAAGAAGGAGCCAATCTCTTGATCGGCACCCCTGGAA 507
||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||
Sbjct 441 AAGCTGACATGAATACTATCGAAGAAGAAGGAGCCAATATCTTGATCGGCACGCCTGGAA 500
Query 508 GGCTTTCAGATATGATGAAA 527
||||||||||||| ||||||
Sbjct 501 GGCTTTCAGATATAATGAAA 520
> Ahg939971 jgi|Araly1|939971|scaffold_600515.1
Length=1822
Score = 957 bits (518), Expect = 0.0
Identities = 912/1097 (83%), Gaps = 47/1097 (4%)
Strand=Plus/Plus
Query 748 CAAAGTCGAAAACGTCTTCTGGTCTGT-AT-TGTGAGTATTTAAAATGCGAAGCAGATCA 805
|||| |||||||| |||||||||| | || | ||||||| | |||||||||||||| |
Sbjct 742 CAAACTCGAAAACCCCTTCTGGTCT-TCATCT-TGAGTATATCGAATGCGAAGCAGAT-A 798
Query 806 A-AAGTCATCACAACTAGTGCATCTCCTGATCGAGAACAAAAATAAAAAGCTTGTCGTAT 864
| || ||||||||||||||| ||||||| ||| |||||| ||||||||||| | ||||
Sbjct 799 AGAAATCATCACAACTAGTGGATCTCCTCATCAAGAACAGTGATAAAAAGCTTATAGTAT 858
Query 865 TCTTCATGACATGTGCTTGTGTTGATTACTGGGGACTCGTACTTTCAAAAATTCCTACCC 924
|||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 859 TCTTCATGACCTGTGCTTCTGTTGACTACTGGGGACTCGTACTTTCAAAAATTCCTGCCC 918
Query 925 TCAAGTCCATTTCCTTCT-TTTCC-ACCCATGGGAAGATGGATCAGAAAGGTAGAGACAC 982
| ||||| || | ||| | |||| | ||||||| | ||| | ||||| | |||||||
Sbjct 919 TGAAGTCTATAT-CTT-TAATTCCTATCCATGGGGATATGAAGCAGAATGCAAGAGACAA 976
Query 983 GGCATTAGCTTCGTTTAC-AGAGGCATCAAGCGGTGTCCTTCTATGCACAGATGTCGCTG 1041
|||||||||||||||||| | | ||||||||||||| |||||| |||||||| || ||||
Sbjct 977 GGCATTAGCTTCGTTTACTA-AAGCATCAAGCGGTGCCCTTCTGTGCACAGACGTTGCTG 1035
Query 1042 CACGTGGACTTGACATTCCAGGCATCGATTACGTTGTTCAGTATGATCCCCCACAAGACC 1101
||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 1036 CACGTGGACTTGATATTCCAGGCATTGATTATGTAGTTCAGTATGATCCCCCACAAGACC 1095
Query 1102 CAGATGTATTTATCCATAGGGTTGGCAGGACTGCAAGAATGGAAAGACAAGGTAGGGCCA 1161
|| || | || | ||| |||| ||||| ||||||||| ||| ||||| ||| | |||||
Sbjct 1096 CAAATATGTTCAACCACAGGGCCGGCAGAACTGCAAGATTGGGAAGACTAGGGAAGGCCA 1155
Query 1162 TTGTGTTTTTAATGCCCAAGGA-GACAGACTATGTAGAGTTCATGCGCATTCGAAGGGTC 1220
||||||||||| |||| ||||| || || |||||||||||| |||||||| |||| |||
Sbjct 1156 TTGTGTTTTTACTGCCTAAGGAGGA-AGCCTATGTAGAGTTTATGCGCATAAGAAGAGTC 1214
Query 1221 CCTCTTCAGGAGAGAAAATGCTCTGAGAACGCTTCTGATGTCATCCCGATTATACGTTCA 1280
||||| | |||||||||||||||||| |||| || |||||||||||||| |||||||||
Sbjct 1215 CCTCTGGAAGAGAGAAAATGCTCTGAGGACGCATCCGATGTCATCCCGATCATACGTTCA 1274
Query 1281 -CTAGCCATCAAGGACCGGGCAGTGTTGGAGAAGGGATTACAGGCATTTGTTTCCTTTGT 1339
|| ||||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1275 GCT-GCCATGAAGGACCGAGCAGTGTTGGAGAAGGGATTAAAGGCATTTGTTTCTTTTGT 1333
Query 1340 CCGTGCTTATAAGGAGCATCACTGCTCTTACATTTTCAGTTGGAAAGGACTTGAAATCGG 1399
||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| ||
Sbjct 1334 CCGTGCTTATAAGGAGCATCACTGCTCTTTCATTTTCAGATGGAAAGAACTTGAAATTGG 1393
Query 1400 AAAGTTAGCCATGGGATATGGCATCTTGTCTTTTCCTTAC-ATATCTGAAGTTAAACAAG 1458
| |||||||||||||||||||| |||||| | |||||| | || |||||||||||||||
Sbjct 1394 AGAGTTAGCCATGGGATATGGCCTCTTGTATCTTCCTT-CAATGTCTGAAGTTAAACAAC 1452
Query 1459 ACAGAATTGGCATTGTCGGTTTTACACCTGTCCAAGGCATCACGTTTGAGGACATAAAAT 1518
||||| || || || ||||| |||||||| |||| ||| |||||| || |||||||
Sbjct 1453 ACAGACTTTCCAGTGAGGGTTTCACACCTGTTGAAGGTGTCAAGTTTGACGAAATAAAAT 1512
Query 1519 ACAAGAACAAATCTCGGGAGAAACAAAGACAGCAAAACTTACTAGCAAGGAAAGACAAAC 1578
|||| |||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 1513 TCAAGGACAAATCTCGGGAGAAACAAAGACAGCAAAACTTACAAGTAAGGAAAGAGAAAC 1572
Query 1579 TGCAACAAGA-AAAGAGAGGGAAACGCAAGA-AAA--GC-TCCAAAGAGGCGG-T--TGA 1630
|||| |||| ||| |||| |||| |||||| ||| | | | | | | | |
Sbjct 1573 GGCAAGAAGAGAAA-AGAGAGAAAGGCAAGAGAAAAAGGGTTGAT-GCTCCTACTACTAA 1630
Query 1631 TGATTCTAACAAAGCGTCGAGAAAGAGAAAGTTAACGGGGAGGCAAAGACAAACTATCCA 1690
|||| |||| ||||||||||||||| ||||| |||| ||||||||||||||| ||
Sbjct 1631 TGATCCTAAGAAAGCGTCGAGAAAG------TTAACAGGGAAGCAAAGACAAACTATTCA 1684
Query 1691 AACAGC-GCAAGATGAAGAAGAAATGAATTTGAGATTATA-GCTTACTGGA-AAAACTGA 1747
||| || | |||||||||||| ||| || ||||||||| | ||| || | |||| | |
Sbjct 1685 AACTGCTG-AAGATGAAGAAGTGATGGATC-GAGATTATAAG-TTAATG-ATAAAAGTAA 1740
Query 1748 AGAAAGGCTCAATTATAGAAGATGATTTTGCTAA-ACTTACAGGAGCTCATGATTT-TGT 1805
||||||| | ||||| ||||||||| | || || ||||||||||| | ||||||| | |
Sbjct 1741 AGAAAGGGTTAATTAAAGAAGATGAATATGA-AAGACTTACAGGAGATGATGATTTAT-T 1798
Query 1806 CTGAT-A-AAGAAGCAA 1820
||||| | ||||| |||
Sbjct 1799 CTGATGAGAAGAAACAA 1815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73666533830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5