BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71380.1
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476269 jgi|Araly1|476269|fgenesh2_kg.2__1399__AT1G71380.1 2538 0.0
Ahg335523 jgi|Araly1|335523|fgenesh1_pg.C_scaffold_1002088 1299 0.0
> Ahg476269 jgi|Araly1|476269|fgenesh2_kg.2__1399__AT1G71380.1
Length=1680
Score = 2538 bits (1374), Expect = 0.0
Identities = 1585/1686 (94%), Gaps = 17/1686 (1%)
Strand=Plus/Plus
Query 4 TCAAACCTCAAAAGCAATTTAGctctctgtctt-ca-agatgacttctcttttcttcttt 61
||||||||||||||||||| || ||| ||| || | | |||||||||| ||||||||||
Sbjct 1 TCAAACCTCAAAAGCAATTAAGTTCTGTGT-TTGGACA-ATGACTTCTCCTTTCTTCTTT 58
Query 62 gttctccttttctcgtctcttctcATAAGCAATGGCGATGCCAACCCAAATTACAAAGAA 121
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 59 GTTTTCCTTTTCTCGTCTCTTCTCATAAGCAATGTTGATGCCAACCCAAATTACAAAGAA 118
Query 122 GCTCTCTCCAAGTCATTGCTCTTCTTCCAAGGTCAGCGATCTGGTCCTCTTCCTAGAGGC 181
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 119 GCTCTCTCCAAGTCATTGCTTTTCTTCCAAGGTCAGCGATCCGGTCCTCTTCCTAGAGGC 178
Query 182 CAACAAATTTCCTGGAGGGCTAGCTCTGGCCTTTCCGATGGCTCTGCTGCTCATGTGGAC 241
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 179 CAACAACTCTCCTGGAGGGCTAGCTCCGGCCTTTCCGATGGCTCTGCTGCTCATGTGGAC 238
Query 242 TTAACCGGCGGGTACTATGACGCAGGAGACAACGTCAAGTTCAATTTACCAATGGCGTTT 301
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 TTAACCGGTGGGTACTATGACGCAGGAGACAACGTCAAGTTCAATTTCCCAATGGCGTTT 298
Query 302 ACCACCACAATGCTCTCATGGAGCGCACTGGAATACGGTAAACGGATGGGTCCTGAGCTG 361
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 ACAACCACAATGCTCTCATGGAGCGCACTGGAATACGGTAAGCGGATGGGTCCTGAGCTG 358
Query 362 GAAAATGCACGTGTGAACATCCGTTGGGCCACAGATTATCTGCTGAAATGTGCCAGAGCC 421
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 GAAAATGCACGAGTGAACATCCGTTGGGCCACAGATTATCTGCTGAAATGTGCTAGAGCC 418
Query 422 ACGCCGGGGAAGCTTTATGTCGGTGTAGGAGATCCTAATGTTGATCACAAATGCTGGGAA 481
|| || || ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 419 ACTCCCGGAAAGCTTTATGTTGGGGTAGGAGATCCTAATGTTGATCACAAATGCTGGGAA 478
Query 482 CGGCCTGAAGACATGGACACACCACGTACAGTTTACTCTGTATCCGCTTCCAATCCTGGT 541
|||||||| |||||||||||||| ||||||||||||||||||||| |||| || ||||||
Sbjct 479 CGGCCTGAGGACATGGACACACCTCGTACAGTTTACTCTGTATCCCCTTCTAACCCTGGT 538
Query 542 TCTGATGTCGCAGCTGAAACAGCAGCAGCTCTAGCTGCAGCTTCTATGGTTTTCAGAAAA 601
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 539 TCTGATGTCGCAGCTGAAACAGCAGCAGCTCTGGCTGCAGCGTCTATGGTTTTCAGGAAA 598
Query 602 GTTGATTCCAAGTATTCACGTTTGCTGCTCGCAACAGCTAAGGATGTGATGCAGTTTGCC 661
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 599 GTTGATTCTAAGTATTCACGTTTGCTGCTCGCAACAGCTAAGAATGTGATGCAGTTTGCC 658
Query 662 ATTCAGTACCA-GGGAGCTTACAGTGATTCCCTTTCCTCATCTGTCTGTCCTTTCTACTG 720
|||||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 659 ATTCAGTA-CAGGGGAGCTTACAGTGATTCCCTTTCTTCATCCGTCTGTCCTTTCTACTG 717
Query 721 CTCCTACTCTGGTTACAAGGACGAGCTAATGTGGGGTGCGTCATGGCTGCTAAGAGCAAC 780
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 718 CTCCTACTCTGGTTACAAGGACGAGCTGATGTGGGGTGCGTCCTGGCTGCTAAGAGCAAC 777
Query 781 GAATAACCCGTATTACGCAAACTTCATAAAATCTTTAGGAGGTGGAGATCAGCCTGACAT 840
|||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 778 GAATGACCCTTATTACGCAAACTTCATAAAATCGTTAGGAGGTGGAGATCAGCCTGACAT 837
Query 841 CTTCAGCTGGGACAATAAATATGCTGGTGCCTATGTTCTTCTCTCACGGAGAGCATTACT 900
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 838 CTTCAGCTGGGACAATAAATATGCTGGTGCCTATGTTCTTCTGTCACGGAGAGCATTACT 897
Query 901 TAACAAAGACAGCAACTTTGAACAATATAAGCAAGCAGCTGAGAATTTCATCTGCAAAAT 960
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 898 TAACAAAGACAGCAACTTTGAACAATACAAGCAAGCAGCTGAGAATTTCATCTGCAAAAT 957
Query 961 CCTTCCAGATTCTCCTTCTTCCTCTACCCAATACACTCAAGGAGGATTAATGTACAAGCT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 958 CCTTCCAGATTCTCCTTCTTCCTCTACCCAATACACTCAAGGAGGATTAATGTACAAGTT 1017
Query 1021 ACCTCAAAGCAATCTTCAGTACGTAACCTCCATAACATTCTTGCTCACAACTTACGCCAA 1080
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1018 ACCTCAAAGCAATCTTCAATACGTAACCTCCATAACATTCTTGCTCACAACTTATGCCAA 1077
Query 1081 ATACATGAAAGCCACAAAACACACATTCAATTGCGGAAGCTCCGTTATCGTCCCCAACGC 1140
|||||||||| ||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 1078 ATACATGAAATCCACAAAACACACATTCAACTGCGGAAACTCCGTCATCGTCCCCAACGC 1137
Query 1141 CTTGATAAGCCTATCGAAGCGACAAGTTGATTACATACTCGGAGATAACCCAATCAAAAT 1200
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1138 CTTGATAAGCCTATCGAAGCGACAAGTCGATTACATACTCGGAGAGAACCCAATCAAAAT 1197
Query 1201 GTCATACATGGTTGGATTCTCTTCCAATTTCCCTAAGAGAATCCACCACAGAGCATCTTC 1260
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTCGTACATGGTTGGTTTCGGATCCAATTTCCCTAAGAGAATCCACCACAGAGCATCTTC 1257
Query 1261 TCTTCCTTCACACGCACTTCGTTCTCAATCGTTAGGCTGCAATGGTGGATTCCAATCGTT 1320
||||||||||||||||||| ||| || || |||||||||||||| ||||||||||| ||
Sbjct 1258 GCTTCCTTCACACGCACTTCATTCCCATTCCTTAGGCTGCAATGGCGGATTCCAATCATT 1317
Query 1321 CTACACTCAAAACCCTAACCCTAACATTCTCACCGGAGCAATCGTAGGAGGTCCGAATCA 1380
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1318 CTACACTCAAAACCCTAACCCTAACATTCTCACAGGAGCAATCGTAGGAGGTCCAAATCA 1377
Query 1381 AAACGATGGGTATCCAGATCAGAGAGACGATTATAGTCACGCGGAACCGGCGACTTATAT 1440
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||
Sbjct 1378 AAACGATGGGTATCCAGATCAGAGAGACGATTACAGCCACGCAGAACCGGCGACTTACAT 1437
Query 1441 AAACGCCGCCTTCGTCGGACCTTTGGCGTACTTCGCCGCCGGCCGTTCGACTTGAAATTG 1500
|||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1438 CAACGCCGCATTCGTCGGACCTTTGGCGTACTTCGCCGCCGGTCGTTCGGCTTGAAATTG 1497
Query 1501 AATTC-GCCACCGCCAC----ATTCTCCGATTTGTAGTTCCATTGTTAGTTAAAGATCCG 1555
| ||| ||||||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 1498 A-TTCCGCCACCGCCACCGCCAATCTCCGATGTGTAGTTCCATTGTTAGTTAAAGATCCG 1556
Query 1556 TTGG-TCCAAGCCTAACGTGAAAATCAGAAG-GGACAAAGTTATTTAAATGTAAAACTCT 1613
|||| | |||||||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 1557 TTGGCTT-AAGCCTAACGTGAAAATCAGAAAAGGAAAAAGTTATTTTAATGTAAAACTCT 1615
Query 1614 TAATGGGCTAAGACCCAATACTAAAGGACCC-GACGGAAATATTTCTCGTGGTCTTATTT 1672
|||||||||||||||||||| ||| |||||| | | ||||||||||||||||||||||||
Sbjct 1616 TAATGGGCTAAGACCCAATATTAATGGACCCAG-CAGAAATATTTCTCGTGGTCTTATTT 1674
Query 1673 AACTCT 1678
|| |||
Sbjct 1675 AATTCT 1680
> Ahg335523 jgi|Araly1|335523|fgenesh1_pg.C_scaffold_1002088
Length=1458
Score = 1299 bits (703), Expect = 0.0
Identities = 1229/1478 (83%), Gaps = 55/1478 (4%)
Strand=Plus/Plus
Query 41 atgacttctcttttcttc-tt-tgtt-ctccttttctcgt-ctcttctcA-T-AAGCAAT 94
||| |||||| ||||||| || |||| |||||| |||| | | ||| ||| | || |||
Sbjct 1 ATGGCTTCTCCTTTCTTCTTTGTGTTCCTCCTTCTCTC-TGCACTT-TCACTGGAG-AAT 57
Query 95 GGCGATGCCA-ACCCAAATTACAAAGAAGCTCTCTCCAAGTCATTGCTCTTCTTCCAAGG 153
| |||||| ||| |||||| |||||| ||||| |||||||| ||||| ||||||||
Sbjct 58 ACCTATGCCAGTCCC-GATTACAGAGAAGCACTCTCAAAGTCATTACTCTTTTTCCAAGG 116
Query 154 TCAGCGATCTGGTC-CTCTTCCTAGAGGCCAACAAA-TTTCCTGGAGGGCTAGCTCTGGC 211
|||||| ||||||| | || || | | |||| ||| | || |||||| | |||||||||
Sbjct 117 TCAGCGGTCTGGTCGC-CTCCCCCGTGACCAA-AAACTCTCATGGAGGTCGAGCTCTGGC 174
Query 212 CTTTCCGATGGCT-CTGCTGCTCATGTGGACTTAACCGGCGGGTACTATGACGCAGGAGA 270
|| || ||||||| || |||||||||||||||| ||||| || |||||||| || || ||
Sbjct 175 CTCTCTGATGGCTCCT-CTGCTCATGTGGACTTGACCGGAGGCTACTATGATGCTGGGGA 233
Query 271 CAACGTCAAGTTCAATTTACCAATGGCGTTTACCACCACAATGCTCTCATGGAGCGCACT 330
||| || ||||||||||| || |||||||| ||||| || |||||||| |||||| | |
Sbjct 234 CAATGTGAAGTTCAATTTCCCGATGGCGTTCACCACTACGATGCTCTCCTGGAGCTCTTT 293
Query 331 GGAATACGGTAA-ACGGATGGG-TCCTGAGCTGGA-AAATGCACGTGTGAACATCCGTTG 387
||| |||||||| | |||||| ||| || || | || | | |||||| |||||||||
Sbjct 294 GGAGTACGGTAAGA-AGATGGGATCC-GAACTCCAGAACT-CTCGTGTGGCCATCCGTTG 350
Query 388 GGCCACAGATTATCTGCTGAAATGTGCCAGAGCCACGCCGGGGAAGCTTTATGTCGGTGT 447
||||||||| ||||| |||||||||||||| ||||| || |||||||||||||| |||||
Sbjct 351 GGCCACAGACTATCTACTGAAATGTGCCAGGGCCACACCCGGGAAGCTTTATGTTGGTGT 410
Query 448 AGGAGATCCTAATGTTGATCACAAATGCTGGGAACGGCCTGAAGACATGGACACACCACG 507
|||||| ||||||| ||||||||| || |||||||| || ||||| |||||||| || ||
Sbjct 411 AGGAGACCCTAATGGTGATCACAAGTGTTGGGAACGCCCAGAAGATATGGACACTCCTCG 470
Query 508 TACAGTTTACTCTGTATC-CGCTTCCAATCCTGGTTCTGATGTCGCAGCTGAAACAGCAG 566
||||| |||||||| || | | || || ||||| |||||||| || |||||||| || |
Sbjct 471 CACAGTCTACTCTGTCTCTC-CCTCAAACCCTGGCTCTGATGTAGCCGCTGAAACCGCTG 529
Query 567 CAGCTCTAGCTGC-AGCTTCTATGGTTTTCAGAAAAGTTGATTCCAAGTATTCACGTTTG 625
| ||||||||||| ||| || ||||||||||| ||||||||| ||||||| || || |||
Sbjct 530 CTGCTCTAGCTGCAAGC-TCCATGGTTTTCAGGAAAGTTGATCCCAAGTACTCTCGCTTG 588
Query 626 CTGCTCGCAACAGCTAAGGATGTGATGCAGTTTGCCATTCAGTACCAGGGAGCTTACAGT 685
|| || | ||||| ||| | || |||||||| || ||||| ||||| || ||||| |||
Sbjct 589 CTCCTGGTGACAGCGAAGAAGGTCATGCAGTTCGCAATTCAATACCAAGGCGCTTATAGT 648
Query 686 GATTCCCTTTCCTCATCTGTCTGTCCTTTCTACTGCTCCTACTCTGGTTACAAGGACGAG 745
|| ||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 649 GACTCCCTTTCCTCTTCCGTCTGTCCTTTTTACTGCTCCTACTCTGGCTACAAGGACGAG 708
Query 746 CTAATGTGGGGTGCGTCATGGCTGCTA-AGAGCAACGAATAACCCGTATTACGCAAACTT 804
|| | ||||| ||| ||||||||| | |||||||| || ||||||||||| |||||||
Sbjct 709 CTGGTATGGGGAGCGGCATGGCTGC-ATAGAGCAACCAACGACCCGTATTACACAAACTT 767
Query 805 CATAAAATCTTTAGGAGGTGGAGATCAGCCTGACATCTTCAGCTGGGACAATAAATATGC 864
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 768 CATAAAATCCTTAGGAGGTGGAGATCAGCCTGACATCTTCAGTTGGGACAATAAATACGC 827
Query 865 TGGTGCCTATGTTCTTCTCTCACGGAGAGCATTACTTAACAAAGACAGCAACTTTGAACA 924
||||||||||||||||||||||| |||||| |||| |||||||||| ||||||||| |
Sbjct 828 CGGTGCCTATGTTCTTCTCTCACGAAGAGCAGTACTGAACAAAGACAACAACTTTGAGCC 887
Query 925 ATATAAGCAAGCAGCTGAGAATTTCATCTGCAAAATCCTTCCAGATTCTCCTTCTTCCTC 984
|| ||||||||||||||||||||||| ||||| ||||||||| ||||||| || || ||
Sbjct 888 CTACAAGCAAGCAGCTGAGAATTTCATGTGCAAGATCCTTCCAAATTCTCCCTCCTCGTC 947
Query 985 TACCCAA-TACACTCAAGGAGGATTAATGTACAAGCTACCTCAAAGCAATCTTCAGTACG 1043
|| || |||||| |||| ||||| |||||||| ||||||| |||||||| || ||||
Sbjct 948 AACA-AAGTACACTAAAGGTGGATTGATGTACAAATTACCTCAGAGCAATCTACAATACG 1006
Query 1044 TAACCTCCATAACATTCTTGCTCACAACTTACGCCAAATACATGAAAGCCACAAAACACA 1103
| || || ||||||||||||||||| || |||||||||||||||||| |||| |||||||
Sbjct 1007 TGACATCGATAACATTCTTGCTCACGACCTACGCCAAATACATGAAATCCACGAAACACA 1066
Query 1104 CATTCAATTGCGGAAGCTC-CGTTATCGTCCCCAACGC-CTTGATAAGCCTATCGAAGCG 1161
| ||||| ||||||| ||| | | ||||||||||| || || ||||| |||||||||||
Sbjct 1067 CCTTCAACTGCGGAAACTCAC-TCATCGTCCCCAATGCACT-GATAAATCTATCGAAGCG 1124
Query 1162 ACAAGTTGATTACATACTCGGAGAT-AACCCAATCAAAATGTCATACATGGTTGGATTCT 1220
|||||| |||||||||||||| | | |||||||| || ||||| |||||||||||||||
Sbjct 1125 ACAAGTCGATTACATACTCGGTG-TGAACCCAATGAAGATGTCGTACATGGTTGGATTCA 1183
Query 1221 -CTTCCAATTTCCCTAAGAGAATCCACCACAGAGCATCTTCTCTTCCTT-CACACGCACT 1278
|| |||||||||| ||||||||||| ||||||| ||| || || || || | || |
Sbjct 1184 GCT-CCAATTTCCCCAAGAGAATCCATCACAGAGGATCCTCACTCCCGAGCAGA-GC-CG 1240
Query 1279 TC-GTTCTCAAT-CGT-TAGGCTGCAATGGTGGATTCCAATCGTTCTACA-CTCAAAACC 1334
|| |||| |||| | | | |||||||| || ||||||||||||||| | | | |||||||
Sbjct 1241 TCCGTTC-CAATTC-TCTCGGCTGCAACGGCGGATTCCAATCGTTC-AGAACACAAAACC 1297
Query 1335 CTAACCCTAACAT-TCTCACCGGAGCAATCGTAGGAGGTCCGAATCAAAACGATGGGTAT 1393
||||||||||||| | | |||||||||||||| ||||| |||||||||||||||| ||||
Sbjct 1298 CTAACCCTAACATAT-TAACCGGAGCAATCGTCGGAGGACCGAATCAAAACGATGAGTAT 1356
Query 1394 CCAGATCAGAGAGACGATTATAGTCACG--CGGAACCGGCGACTTATATAAACGCCGCCT 1451
|||||||||||||||||||| | || | | || || || ||||| || ||||| || |
Sbjct 1357 CCAGATCAGAGAGACGATTACAC-CA-GATCTGAGCCAGCTACTTACATCAACGCTGCAT 1414
Query 1452 TCGTCGGACCTTTGGCGTACTTCGCCGCCGGCCGTTCG 1489
|||||||||| |||||||| |||||||||||||| |||
Sbjct 1415 TCGTCGGACCATTGGCGTATTTCGCCGCCGGCCGATCG 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63763070130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5