BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71410.1
Length=3271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926502 jgi|Araly1|926502|scaffold_202063.1 3799 0.0
Ahg472532 jgi|Araly1|472532|fgenesh2_kg.1__2486__AT1G22870.1 2296 0.0
> Ahg926502 jgi|Araly1|926502|scaffold_202063.1
Length=2740
Score = 3799 bits (2057), Expect = 0.0
Identities = 2236/2323 (96%), Gaps = 10/2323 (0%)
Strand=Plus/Plus
Query 181 AATTGGATCCAGCAGAAATGTCGATAAACATGAAAACATTTACTCAAGCTCTAGCTAGAA 240
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 4 AATTCGATCCAGCAGAAATGTCGATAAATATGAAAACGTTTACTCAAGCTCTAGCTAGAA 63
Query 241 CGGCTGCTGTGATTGAGAAGACGGTTCATACCACAGTACAGGAAGTTACGGGACC-AAAG 299
| || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 64 CCGCAGCTGTGATTGAGAAGACGGTTCATACCACAGTTCAGGAAGTTACGGGACCTAAA- 122
Query 300 GCTCTTCAGGATTACGAGCTACTTGATCAGATCGGTTCCGCTGGTCCTGGTCTAGCTTGG 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 123 GCTCTTCAGGATTACGAGCTACTCGATCAGATCGGTTCCGCTGGTCCTGGTCTAGCTTGG 182
Query 360 AAGCTATACGCAGCTAAGGCGCGTGATTCCACGAGGCCACAGCAGTACCCGACGGTCTGT 419
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 183 AAGCTATACGCAGCTAAGGCGCGTGACTCCACGCGGCCACAGCAGTACCCGACGGTCTGT 242
Query 420 GTATGGATGCTTGATAAGCGTGCTTTGTCGGAGGCTCGTGTACGAGCGAATTTGTCTAAG 479
|| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 243 GTCTGGATGCTTGATAAGCGTGCTTTGTCTGAGGCTCGTGTACGAGCGGGGTTGTCTAAG 302
Query 480 GCAGCTGAAGATGCGTTTCTTGATCTGATTCGAGCTGATGCGGGGAAGCTGGTGAGGTTG 539
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 303 GCAGCTGAAGATGCGTTTCTTGATCTGATTCGAGCTGATGCAGGGAAGCTTGTGAGGTTG 362
Query 540 AGGCATCCTGGTGTGGTTCATGTGGTGCAAGCGCTTGATGAGAATAAGAATGCTATGGCT 599
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 363 AGACATCCTGGTGTGGTTCATGTGGTGCAAGCACTTGATGAGAATAAGAATGCTATGGCT 422
Query 600 TTAGTTACGGAGCCGCTTTTTGCTTCTGTGGCTAATGCGCTTGGTAATGTTGAGAATGTG 659
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 423 TTAGTTACGGAGCCGCTTTTTGCTTCTGTGGCTAATGCGCTTGGGAATGTAGAGAATGTG 482
Query 660 GGTAATGTGCCGAAAGATCTGAAATCAATGGAGATGAGCTTGTTGGAGGTGAAGCATGGT 719
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GCTAATGTGCCAAAAGATCTGAAATCAATGGAGATGAGCTTGTTGGAGGTGAAGCATGGT 542
Query 720 CTGCTCCAGATTTCTGAGACACTGAAC-TTCTTACACAATAACGCAAATCTCATCCATCG 778
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 543 CTGCTCCAGATTTCTGAGACACTGAACTTTC-TACACAATAACGCAAATCTCATCCATCG 601
Query 779 AGCCATTTCTCCAGAGAATGTTCTTATTACTTCAGCTGGTTCTTGGAAGCTTGCCGGGTT 838
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AGCTATATCTCCAGAGAATGTTCTTATTACTTCAGCTGGTTCTTGGAAGCTTGCCGGGTT 661
Query 839 TGGTTTTGCTATTTCAG-CAGCACAGGCTGGGAATTTGGATAACATGCAATCGTTCCACT 897
||| ||||||||||| | |||||||||||||||||||||||||||||||| | |||||||
Sbjct 662 TGGGTTTGCTATTTC-GACAGCACAGGCTGGGAATTTGGATAACATGCAAGCATTCCACT 720
Query 898 ATTCTGAATACGACGTCGAGGATTCAATACTGCCAGTCCAGCCAT-CTCTAAATTACACT 956
|||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 721 ATTCTGAATATGACGTCGAGGATTCGATACTGCCAGTCCAGCCATCCT-TAAATTACACT 779
Query 957 GCACCTGAACTGATGCGCAGCAAAAGTCCTTCAGCTGGAGCTTCGTCGGACATTTTTAGT 1016
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCACCGGAACTGATGCGGAGTAAAAGTCCTTCAGCTGGAGCTTCGTCGGACATTTTTAGT 839
Query 1017 TTTGGATGCCTTGCCTATCATTTAGTTGCTCGGAAACCGTTGTTTGACTGCAATAATAAT 1076
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 840 TTTGGATGCCTTGCCTATCATCTAGTTGCTCGGAAACCGTTGTTAGACTGCAATAATAAT 899
Query 1077 GTCAAGATGTACATGAACACGTTGAACTATATAACAAATGAATCTTTCTCATCTATACCC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTCAAGATGTACATGAACACGTTGAACTATATAACAAATGAATCTTTCTCATCTATACCC 959
Query 1137 TCGGAATTGGTATCTGATTTGCAAAGGATGCTATCAACGAACGAGTCCTTTAGACCAACA 1196
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 TCGGACTTGGTATCTGATTTGCAAAGGATGCTATCAATGAACGAGTCCTTTAGACCAACA 1019
Query 1197 GCATTAGATTTCACAGGATCGAATTTTTTCCGAAGTGACGCTAGGTTACGTGCTCTCCGC 1256
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCATTAGATTTCACAGGATCAAATTTTTTCCGAAGTGACGCTAGGTTACGTGCTCTCCGC 1079
Query 1257 TTCCTTGATCATTTGCTTGAAAGAGATAACATGCAAAAGTCCGAGTTCTTAAAAGCATTA 1316
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1080 TTCCTTGATCATATGCTTGAAAGAGATAATATGCAGAAGTCCGAGTTCTTAAAAGCATTA 1139
Query 1317 TCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGGTATAAGGTGCTTCCACCTCTT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGGTATAAGGTGCTTCCACCTCTT 1199
Query 1377 TGTGCGGAACTTAGGAATTTAGTTTTGCAACCAATAATCTTGCCAATGGTTCTAACTATA 1436
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1200 TGTGCGGAACTTAGGAATTTAGTTTTGCAACCAATGATCTTGCCAATGGTTCTAACTATA 1259
Query 1437 GCACAGTCTCAGGATAGAACTGACTTTGAGCTGATAACACTTCCGGCTCTTGTTCCTGTT 1496
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1260 GCACAGTCCCAGGATAGAACTGATTTTGAACTGATAACACTTCCGGCTCTTGTTCCTGTT 1319
Query 1497 CTGAGTACTGCTTCAGGAGATACATTACTGCTGCTTGTGAAA-CATGCAGATCTTATTAC 1555
|||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||||
Sbjct 1320 CTGAGTACTGCTTCAGGAGATACATTACTGCTGCTTGT-AAAGCATGCCGAGCTTATTAC 1378
Query 1556 TAACAAGACTGATAGTGAGCATCTTGTATCGCACGTCCTCCCTTTGCTTCTGCGAGCCTA 1615
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1379 TAACAAGACTGATAGTGAGCATCTTGTATCGCACGTCCTCCCTTTGCTTCTGCGGGCCTA 1438
Query 1616 CAATGATAACGATGTCCGCATTCAGGAGGAAGTTCTTAAAAGATCCACATCTGTGGCTAA 1675
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1439 CAATGATAACGATGTCCGCATTCAGGAGGAAGTTCTCAAAAGATCCACATCTGTTGCTAA 1498
Query 1676 GCAACTCGATGGTCAGGTTGTGAGGCAAGCAATTTTGCCTCGTGTTCATGGCTTGGCTCT 1735
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GCAACTCGATGGTCAGGTTGTCAGGCAAGCAATTTTGCCTCGTGTTCATGGCTTGGCTCT 1558
Query 1736 CAAAACTACAGTTGCTGCGGTCAGAGTAAATGCTTTGCTCTGCTTAGCTGAGTTGGTGCA 1795
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1559 CAAAACCACAGTTGCTGCGGTCAGAGTAAATGCTTTGCTCTGCTTAGCAGAGTTGGTGCA 1618
Query 1796 AACGCTTGATAAGCCTGCCGCTATCGAAATTCTGGAAACAATTCAACGGTGTACTGCCGT 1855
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1619 AACGCTTGATAAGCCTGCTGCTATCGAAATTCTGCAAACAATTCAACGGTGTACTGCCGT 1678
Query 1856 AGATCGTTCTGCACCAACCCTAATGTGTACCCTTGCTGTGGCAAACGCAATCCTCAAACA 1915
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1679 AGATCGTTCTGCACCCACCCTAATGTGTACCCTTGCTGTGGCAAACGCGATCCTCAAACA 1738
Query 1916 GTATGGAGTTGAATTCACAGCAGAACATGTGCTTACCCTGATGATGCCGCTTCTCACTGC 1975
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1739 GTATGGAGTTGAATTCACAGCAGAACATGTTCTTACCCTGATGATGCCGCTGCTCACTGC 1798
Query 1976 CCAACAACTGAACGTCCAACAGTTTGCCAAATATATGCTATTTGTCAAGGATATTCTCAG 2035
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1799 CCAACAACTGAACGTCCAGCAGTTTGCCAAATATATGTTATTTGTCAAGGATATTCTCAG 1858
Query 2036 GAAAATAGAGGAAAAAAGAGGAGTAACAGTGAACGATTCCGGAGTCCCAGAGGTGAAACC 2095
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1859 GAAAATAGAGGAAAAAAGAGGAGTTACAGTGAACGATTCCGGAGTCCCAGACGTGAAACC 1918
Query 2096 GCATTCTGCTGCCAATGGACTCCAGTTTCAGTCATCAACCCAAATACCTGAGAAGGTTGC 2155
|||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 1919 GCATTCTGTTGCCAATGGACTCCAGTTTCAATCATCGACCCAAACACCTGAGAAGGTTGC 1978
Query 2156 TTCTGCAGCCAAGAGCAGTCCTGCATGGGATGAAGATTGGGGCTCCCCGAGCAAAGATTC 2215
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1979 TTCTGCAGCCAAGAGCAGTCCTGCATGGGATGAAGATTGGGGTTCCCCGAGCAAAGATTC 2038
Query 2216 TGCTGTGGGAAATCCTGCTTCTTCTCGTCATAACACAAACGATCAGTTTAACAAATCCAC 2275
|||||||||||||||||||||||||| |||||||||| || |||| ||||||||||||||
Sbjct 2039 TGCTGTGGGAAATCCTGCTTCTTCTCATCATAACACACACCATCAATTTAACAAATCCAC 2098
Query 2276 AGATCAGTCACAGCCATCGATCATGTCTACTCTGCCCAACAAGACAACAGCGCCAACAAC 2335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2099 AGATCAGTCACAGCCATCGATCATGTCTACTCTGCCCAACAAGACAACAGCGCCAACCAC 2158
Query 2336 ATGCCCTGCAGTGGACATCGAGTGGCCTCCAAGGCAATCTTCAAGCCTCACTGCTCCAGC 2395
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2159 ATGCCCTGCAGTGGACATCGAGTGGCCTCCAAGGCAATCCTCAAGCCTCACTGCTCCAGC 2218
Query 2396 AACTGATAATCAGACACAACTAAACACAGGAACATCATTTGCTTCGGGTTTCGATGAGTT 2455
||||||||||||||||||||||||||| |||||||||||| || ||||||||||||| ||
Sbjct 2219 AACTGATAATCAGACACAACTAAACACGGGAACATCATTTACTCCGGGTTTCGATGAATT 2278
Query 2456 AGATCCGTTTGCTAATTGGCCTCCACGTCCCAACAATGGTGCT 2498
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2279 AGATCCGTTTGCTAATTGGCCTCCACGTCCCAACAATGGTGCT 2321
Score = 665 bits (360), Expect = 0.0
Identities = 410/434 (94%), Gaps = 3/434 (1%)
Strand=Plus/Plus
Query 2515 GTCTCAAGAATGGCGCTGCATCCAATTTTAGCAACAATTTACCAGGCGGCACCCATTTTC 2574
||| ||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 2305 GTCCCAACAATGGTGCTGCATCGAGTTTTAGCAACAATTTACCAGGCGGCACCCATTTTC 2364
Query 2575 AGACAGCTAACAATGACAACTGGGCATTCAGCAG---TGCCTCCTTGTCTTCGCTAAAAC 2631
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 2365 AGACAGCTAACAATGACAACTGGGCATTCAGCAACAATGCCGCCTTGTCTTCGCTAAAAC 2424
Query 2632 CACCCCAGCAAGGGAATCAAGGTATCTCTGCAAATAATCAAGATCCACTCAACTCTTTCG 2691
|||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 2425 CACCCCAGCAAGGGAATCCAGGTATCTCTGCAAATAATCAAGATCCAATAAACTCTTTCG 2484
Query 2692 GTGTACCAAAACAGAGCCAAGGAATGCCATCTTTCACCAGTGGTTCATACAACAACCAGA 2751
| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 2485 GAGTACCAAAACAGAGCCAAGGAATGCCATCTTTCAGCAGTGGTTCATACAATAACCAGA 2544
Query 2752 AGCCAGCAGACATCAGTTCCATATTCGGTTCAAGCAAAACCGAACCGTCCGCAATGAAAC 2811
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 2545 AGCCAGCAGACATCAGTTCCATATTCGGTTCAAGCAAAACCGAGCAGTCCGCAATGAAAC 2604
Query 2812 TCGCACCACCACCTTCAATAGCAATGGGAAGAGGAAGGGGTAGAGGTAGAGGTGGTACTG 2871
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2605 TTGCACCACCACCTTCAATAGCAATGGGAAGAGGAAGGGGGAGAGGTAGAGGTGGTACTG 2664
Query 2872 GCACATCTACCTCAAAGCCCAGTGGTTCACAACCATCTCTATTGGATCTATTATGACCAC 2931
||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 2665 GCACACCTACCTCAAAGCCCAATGGTCCACAACCATCTCTATTGGATCTATTATGACCAC 2724
Query 2932 AGTTCTTGGTGTTG 2945
|||||| |||||||
Sbjct 2725 AGTTCTCGGTGTTG 2738
> Ahg472532 jgi|Araly1|472532|fgenesh2_kg.1__2486__AT1G22870.1
Length=2739
Score = 2296 bits (1243), Expect = 0.0
Identities = 1970/2315 (85%), Gaps = 73/2315 (3%)
Strand=Plus/Plus
Query 198 ATGTCGATAAACATGAAAACATTTACTCAAGCTCTAGCTAGAACGGCTGCTGTGATTGAG 257
|||||||| || |||| ||| | || ||||| ||||| | ||||||||| |||||||||
Sbjct 1 ATGTCGATTAATATGAGAACGCTGACGCAAGCACTAGCCAAAACGGCTGCGGTGATTGAG 60
Query 258 AAGACGGTTCATACCACAGTACAGGAAGTTAC-GGGACCAAAGGCTCTTCAGGATTACGA 316
||||||||||| |||||||| ||||| ||||| || ||||| ||||||| || |||||
Sbjct 61 AAGACGGTTCAAACCACAGTCCAGGAGGTTACAGGTCCCAAA-CCTCTTCAAGACTACGA 119
Query 317 GCTACTTGATCAGATCGGTTCCGCTGGTCCTGGTCTAGCTTGGAAGCTATACGCAGCTAA 376
|| || |||||||||||||||| |||||||||||| || |||||||| ||| | || ||
Sbjct 120 CCTTCTCGATCAGATCGGTTCCGGTGGTCCTGGTCTCGCCTGGAAGCTTTACTCCGCCAA 179
Query 377 GGCGCGTGATTCCACGA-GGCCACAGCAGTACCCGACGGTCTGTGTATGGATGCTTGATA 435
||| ||||| ||||| | | || || ||||| || || ||||| || ||| |||||||||
Sbjct 180 GGCACGTGACTCCAC-ACGACCTCACCAGTATCCAACCGTCTGCGTCTGGGTGCTTGATA 238
Query 436 AGCGTGCTTTGTCGGAGGCTCGT-GTACGAGC-GAATTTGTCTAAGGCAGCTGAAGATGC 493
|||| ||||| || ||||||||| ||| | || | | || ||||| || |||||||||||
Sbjct 239 AGCGCGCTTTATCTGAGGCTCGTGGTA-GGGCGGGA-TTATCTAAAGCTGCTGAAGATGC 296
Query 494 GTTTCTTGATCTGATTCGAGCTGATGCGGGGAAGCTGGTGAGGTTGAGGCATCCTGGTGT 553
|||||| ||| ||||||| ||||||||||| ||||| ||| ||||||| ||||| |||||
Sbjct 297 GTTTCTCGATTTGATTCGTGCTGATGCGGGAAAGCTTGTGCGGTTGAGACATCCCGGTGT 356
Query 554 GGTTCATGTGGTGCAAGCGCTTGATGAGAATAAGAATGCTATGGCTTTAGTTACGGAGCC 613
|||||||||||| || |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 357 GGTTCATGTGGTTCAGGCGCTTGATGAGAATAAGAATGCTATGGCTATGGTTACGGAGCC 416
Query 614 GCTTTTTGCTTCTGTGGCTAATGCGCTTGGTAATGTTGAGAATGTGGGTAATGTGCCGAA 673
||| || || || |||||||| |||||||| ||||| || ||||||| ||| || |||||
Sbjct 417 GCTCTTCGCATCCGTGGCTAACGCGCTTGGGAATGTGGAAAATGTGGATAACGTTCCGAA 476
Query 674 AGATCTGAAATCAATGGAGATGAGCTTGTTGGAGGTGAAGCATGGTCTGCTCCAGATTTC 733
|||||| || | ||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 477 AGATCTTAAGGCTATGGAGATGAGCTTGTTGGAGGTGAAGCATGGTCTTCTCCAAATTGC 536
Query 734 TGAGACACTGAAC-TTCTTACACAATAACGCAAATCTCATCCATCGAGCCATTTCTCCAG 792
|||||| ||||| ||||| || |||||||| |||| || ||||| || | |||||||
Sbjct 537 AGAGACATTGAACTTTCTT-CATAATAACGCCCATCTTATTCATCGTGCTGTATCTCCAG 595
Query 793 AGAATGTTCT-TATTACTTCAGCTGGTTCTTGGAAGCTTGCCGGGTTTGGTTTTGCTATT 851
|||||||| | ||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 596 AGAATGTT-TATATTACTTCGGCTGGTTCTTGGAAGCTTGCCGGATTTGGCTTTGCTATT 654
Query 852 TCAGCAGCACAGGCTGGGAATTTGGATAACATGCAATCGTTCCACTATTCTGAATACGAC 911
|||| ||||||| |||||||||||||||| ||||||| |||||||| |||||||| ||
Sbjct 655 TCAGAAGCACAGAATGGGAATTTGGATAACTTGCAATCATTCCACTACTCTGAATATGAT 714
Query 912 GTCGAGGATTCAATACTGCCAGTCCAGCCATCTCTAAATTACACTGCACCTGAACTGATG 971
|| ||||| ||||| |||||| |||| |||||| ||||||| |||||||||||| || ||
Sbjct 715 GTTGAGGACTCAATCCTGCCACTCCAACCATCTTTAAATTATACTGCACCTGAATTGGTG 774
Query 972 CGCAGCAAAAGTCCTTCAGCTGGAGCTTCGTCGGACATTTTTAGTTTTGGATGCCTTGCC 1031
|| ||||||| | |||| ||||||| ||| || |||||||||||||| |||||||| |||
Sbjct 775 CGGAGCAAAACTTCTTCGGCTGGAGTTTCTTCAGACATTTTTAGTTTCGGATGCCTCGCC 834
Query 1032 TATCATTTAGTTGCTCGGAAACCGTTGTTTGACTGCAATAATAATGTCAAGATGTACATG 1091
||||||||||| || |||||||| |||||||| ||| |||| ||||||||||||||||||
Sbjct 835 TATCATTTAGTGGCACGGAAACCATTGTTTGATTGCCATAACAATGTCAAGATGTACATG 894
Query 1092 AACACGTTGAACTATATAACAAATGAATCTTTCTCATCTATACCCTCGGAATTGGTATCT 1151
||||| ||||||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 895 AACACATTGAACTATCTAACAAATGAAACTTTCTCATCTATACCCTCGGACTTGGTATCT 954
Query 1152 GATTTGCAAAGGATGCTATCAACGAACGAGTCCTTTAGACCAACAGCATTAGATTTCACA 1211
||||| ||| |||||||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 955 GATTTACAACGGATGCTATCAATGAACGAGTCATTTAGACCAACTGCATTAGATTTCACA 1014
Query 1212 GGATCGAATTTTTTCCGAAGTGACGCTAGGTTACGTGCTCTCCGCTTCCTTGATCATTTG 1271
||||| |||||||||||||| ||| ||||||| ||||||||||| |||||||||||| ||
Sbjct 1015 GGATCTAATTTTTTCCGAAGCGACACTAGGTTGCGTGCTCTCCGTTTCCTTGATCATATG 1074
Query 1272 CTTGAAAGAGATAACATGCAAAAGTCCGAGTTCTTAAAAGCATTATCAGATATGTGGAAA 1331
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1075 CTTGAAAGAGACAACATGCAGAAGTCTGAGTTCTTAAAAGCATTATCAGATATGTGGAAA 1134
Query 1332 GATTTTGATTCCCGTGTATTACGGTATAAGGTGCTTCCACCTCTTTGTGCGGAACTTAGG 1391
||||||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1135 GATTTTGATTCTCGGGTATTACGGTATAAGGTGCTTCCTCCTCTTTGTGCTGAACTTAGG 1194
Query 1392 AATTTAGTTTTGCAACCAAT-AATCTTGCCAATGGTTCTAACTATAGCACAGTCTCAGGA 1450
||||| | | |||||||||| | |||| || |||||||||||||||||| ||||||||||
Sbjct 1195 AATTTGGGTATGCAACCAATGATTCTT-CCCATGGTTCTAACTATAGCAGAGTCTCAGGA 1253
Query 1451 T-AGAACTGACTTTGAGCTGATAACACTTCCGGCTCTTGTTCCTGTTCTGAGTACTGCTT 1509
| |||| |||||||||| ||| ||| || || || ||||||||||||||||||||||||
Sbjct 1254 TAAGAA-TGACTTTGAGTTGACAACGCTCCCAGCCCTTGTTCCTGTTCTGAGTACTGCTA 1312
Query 1510 CAGGAGATACATTACTGCTGCTTGTGAAA-CATGCAGATCTTATTACTAACAAGACTGAT 1568
| || |||||||||||| ||||| | ||| | ||||| ||||||| |||||||||| ||
Sbjct 1313 CGGGTGATACATTACTGTTGCTTAT-AAAGCGGGCAGAGCTTATTATTAACAAGACTAAT 1371
Query 1569 AG-TGAGCATCTTGTATCGCACGTCCTCCCTTTGCTTCTGCGAGCCTACAATGATAACGA 1627
| |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1372 -GCAGAGCATCTTGTATCACATGTCCTCCCTTTGCTTCTCCGAGCCTACAACGATAACGA 1430
Query 1628 TGTCCGCATTCAGGAGGAAGTTCTTAAAAGATCCACATCTGTGGCTAAGCAACTCGATGG 1687
||| || || |||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1431 TGTTCGGATACAGGAGGAAGTTCTGAAAAGATCTACATCTGTTGCTAAGCAACTCGATGG 1490
Query 1688 TCAGGTTGTGAGGCAAGCAATTTTGCCTCGTGTTCATGGCTTGGCTCTCAAAACTACAGT 1747
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1491 TCAGGTTGTAAGGCAAGCAATTTTGCCTCGCGTTCATGGCTTGGCTCTCAAAACCACAGT 1550
Query 1748 TGCTGCGGTCAGAGTAAATGCTTTGCTCTGCTTAGCTGAGTTGGTGCAAACGCTTGATAA 1807
|||||| |||||||||||||||||||| |||||||| ||| |||| ||||| ||||||||
Sbjct 1551 TGCTGCCGTCAGAGTAAATGCTTTGCTTTGCTTAGCAGAGCTGGTTCAAACACTTGATAA 1610
Query 1808 GCCT-GCCGCTATC-GAAATTCTGGAAACAATTCAACGGTGTACTGCCGTAGATCGTTCT 1865
|| || | || | ||||||||| ||||||||||||| |||||||| || |||||||||
Sbjct 1611 -ACTCGCTGTTA-CTGAAATTCTGCAAACAATTCAACGCTGTACTGCTGTTGATCGTTCT 1668
Query 1866 GCACCAACCCTAATGTGTACCCTTGCTGTGGCAAACGCAATCCTCAAACAGTATGGAGTT 1925
||||||||||| |||||||| ||||| | ||||||||||| ||||| ||||||||||||
Sbjct 1669 GCACCAACCCTTATGTGTACTCTTGCAATCGCAAACGCAATTCTCAAGCAGTATGGAGTT 1728
Query 1926 GAATTCACAGCAGAACATGTGCTTACCCTGATGATGCCGCTTCTCACTGCCCAACAACTG 1985
|||||||| ||||||| |||||| ||||||| || ||||||||||||||||||||| ||
Sbjct 1729 GAATTCACTTCAGAACACGTGCTTCCCCTGATTATACCGCTTCTCACTGCCCAACAATTG 1788
Query 1986 AACGTCCAACAGTTTGCCAAATATATGCTATTTGTCAAGGATATTCTCAGGAAAATAGAG 2045
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1789 AATGTCCAACAGTTTGCCAAATATATTCTATTTGTCAAGGATATTCTCAGGAAAATAGAG 1848
Query 2046 GAAAAAAGAGGAGTAACAGTGAACGATTCCGGAGTCCCAGAGGTGAAACC-G-CATTCTG 2103
|||||||||||||| ||||| || ||||| ||||||||||| || ||||| | | | |||
Sbjct 1849 GAAAAAAGAGGAGTTACAGTAAATGATTCTGGAGTCCCAGAAGTAAAACCAGGC-T-CTG 1906
Query 2104 CTGCCAATGGACTCCAGTTTCAGTCATCAACCCAAATACCTGAGAAGGTTGCTTCTGCAG 2163
||| |||| || |||||||| |||||||||||| | |||| ||||||||||||||||
Sbjct 1907 TTGCGGATGGGCTTCAGTTTCAAACATCAACCCAAAAAACTGAAAAGGTTGCTTCTGCAG 1966
Query 2164 CCAAGAGCAGTCCTGCATGGGATGAAGATTGGGGC-TCCCCGAGCAAAGATT-CTGCTG- 2220
| |||| |||||||||||||||||||||||||| | | || || ||| |||| |||||
Sbjct 1967 CAAAGAACAGTCCTGCATGGGATGAAGATTGGGCCCTTCC-GACCAA-GATTTCTGCTCC 2024
Query 2221 TGGGAAATCCTGCTTCTTCTCGTCATAACACAAACGATCAGTTTAACAAATCCACAGATC 2280
| | | |||||| | | | || ||| | ||||||||||| || |||| ||
Sbjct 2025 TAG-AGATCCTGAA-C--C-CA-CA-AACTC------TCAGTTTAACAGTTCTACAGTTC 2071
Query 2281 AGTCACAGCCATCGATCATGTCTACTCTGCCCAACAAGACAACAGCGCCAACAACATGCC 2340
|||||||| |||||| | | | | |||| ||| |||||||||||||
Sbjct 2072 AGTCACAGTCATCGA--A---C--C---G--------GACATCAGTACCAACAACATGCC 2113
Query 2341 CTGCAGTGGACATCGAGTGGCCTCCAAGGCAATCTTCAAGC-CTCACTGCTCCAGCAA-C 2398
||||||| ||| | |||||||||||||| |||||||| || | |||||||| ||| | |
Sbjct 2114 CTGCAGTTGACCTAGAGTGGCCTCCAAGACAATCTTCCAGTGC-CACTGCTC-AGCCAGC 2171
Query 2399 TGATAATCAGACACA-ACTAAAC-A--CAGGAACATCATTTGCTTCGGGTTTCGATGAGT 2454
| || || |||||| | ||||| | |||||||||||| || | |||| |||||
Sbjct 2172 TAATGATGAGACACGGA-TAAACGAAGCAGGAACATCATCAACTCCAAGTTTTGATGAAC 2230
Query 2455 TAGATCCGTTTGCTAATTGGCCTCCACGTCCCAAC 2489
|||| || |||||||| ||||| ||||| ||||||
Sbjct 2231 TAGACCCTTTTGCTAACTGGCCACCACGGCCCAAC 2265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123458766812
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5