BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71420.1
Length=2278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926503 jgi|Araly1|926503|scaffold_202064.1 3214 0.0
> Ahg926503 jgi|Araly1|926503|scaffold_202064.1
Length=2275
Score = 3214 bits (1740), Expect = 0.0
Identities = 2091/2263 (92%), Gaps = 13/2263 (1%)
Strand=Plus/Plus
Query 21 GTAATGAATTTCG-AGCGTCGATGATTACAAGCTTATCTCAAATCTCTTTTGGGACATTG 79
|||||||| |||| |||||||||||||||||| ||||| || ||||| ||||||||||||
Sbjct 1 GTAATGAA-TTCGAAGCGTCGATGATTACAAGTTTATCACATATCTCGTTTGGGACATTG 59
Query 80 AGGCGCTTTGGCTCTTCTGTTTTACCTTCTGCACTGAAACGCGAATTTGTTGAAGGATTG 139
||||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 60 AGGCGCTTTTGCTCTTCTGCTTTACCTTCTGCACTGAAACACGAACTTGTTGAAGGATTG 119
Query 140 CGTACGTTAGTAAGGTCTGGTGATATCCGTCGAGCTGTTTCCTTATTCTATTCTGCGCCG 199
|||||||||||||||||||||||| ||||||||||| ||||||| ||||||| ||||||
Sbjct 120 CGTACGTTAGTAAGGTCTGGTGATCTCCGTCGAGCTCTTTCCTTGTTCTATTGTGCGCCT 179
Query 200 GTCGAGCTTCAGTCTCAACAGGCTTACGCAGCTCTGTTCCAAGCATGTGCAGAGCAACGC 259
||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||
Sbjct 180 GTCGAGCTTCAGTCTCAGCACGCTTACGCGGCTCTGTTCCAAGCATGTGCAGATCAACGC 239
Query 260 AATCTCCTCGATGGAATCAACTTGCACCACCACATGCTCTCACATCCCTATTGTTATTCA 319
||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 240 AATCTCCGCGATGGAATCAACTTGCACCGCCACATGTTCTCACATCCCTATTGTTATTCA 299
Query 320 CAGAACGTTATACTTGCTAATTTCCTCATTAATATGTATGCCAAATGTGGGAATATCTTA 379
|||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||
Sbjct 300 CAGAACGTTATACTTGCTAATTACCTCATTACTATGTATGCGAAATGCGGGAATATCTTA 359
Query 380 TACGCACGACAGGTGTTTGATACAATGCCTGAGAGGAATGTTGTTTCATGGACTGCATTG 439
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 360 TACGCACGTCAGGTGTTTGATACAATGCCTGAGAGGAATGTAGTTTCGTGGACTGCACTG 419
Query 440 ATCACAGGCTATGTACAGGCTGGGAATGAGCAAGAGGGATTCTGTCTTTTCTCGTCTATG 499
||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 420 ATCACAGGCTATGCGCAGGCAGGGAATGAGCAAGATGGATTCTGTCTTTTCTCTTCTATG 479
Query 500 TTATCCCATTGTTTCCCTAACGAGTTTACGCTGTCAAGCGTGTTAACTTCATGTCGATAT 559
||| ||||||| | ||||||||||||| || | |||||||| || |||| ||||| |||
Sbjct 480 TTAGCCCATTGCTGCCCTAACGAGTTTGCGTTATCAAGCGTATTGACTTTGTGTCGGTAT 539
Query 560 GAGCCTGGAAAGCAGGTACATGGACTTGCTCTGAAACTTGGTTTACATTGTTCGATCTAT 619
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 540 GAGCCTGGAAAGCAGGTACATGGACTTGCTTTGAAACTTGGTTTATATTGTTCGATTTAT 599
Query 620 GTGGCGAATGCAGTTATCTCTATGTACGGTAGGTGTCATGATGGTGCCGCAGCATATGAA 679
|||||||||||| |||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 600 GTGGCGAATGCACTTATCTCTATGTACGGTAGGTGTCATGATGGTACCGCCGCCTATGAA 659
Query 680 GCTTGGACTGTGTTTGAAGCCATAAAGTTTAAGAATTTGGTTACTTGGAACTCAATGATT 739
||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 660 GCTTGGACTGTATTTGAGGCCATGGAGTTTAAGAATCTGGTTACTTGGAACTCAATGATT 719
Query 740 GCTGCTTTTCAGTGCTGCAATCTTGGGAAAAAGGCCATTGGCGTTTTTATGCGGATGCAT 799
|| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 GCAGCTTTTCAGTGTTGCAATCTTGGGAAACAGGCCATTGGCGTTTTTATGCGGATGCAT 779
Query 800 AGTGATGGAGTGGGATTTGATCGTGCCAC-GTTGCTTAATATATGTTCTTCCTTGTACAA 858
||||||||||| ||||||||||| ||||| ||| |||||||||||| || ||||||||||
Sbjct 780 AGTGATGGAGTCGGATTTGATCGCGCCACGGTT-CTTAATATATGTACTACCTTGTACAA 838
Query 859 AAGCTCTGACTTAGTTCCTAATGAGGTTTCAAAGTGTTGTCTTCAACTGCATTCTCTGAC 918
|||||||||||| | |||| || ||||||| |||||||||||||| ||||||||||||||
Sbjct 839 AAGCTCTGACTTGGATCCTGATCAGGTTTCCAAGTGTTGTCTTCAGCTGCATTCTCTGAC 898
Query 919 TGTAAAATCCGGGTTGGTGACTCAGACTGAAGTGGCTACTGCATTGATTAAAGTTTATTC 978
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 TGTAAAATCCGGGTTGGTAACTCAGACTGAAGTGGCTACTGCATTGGTTAAAGTTTATTC 958
Query 979 AGAAATGTTAGAAGACTATACTGACTGCTACAAGCTTTTTATGGAAATGAGTCACTGCAG 1038
|||||| |||| ||| | |||||||||||||||||||||||| || ||||||||||||||
Sbjct 959 AGAAATTTTAGGAGAATTTACTGACTGCTACAAGCTTTTTATAGACATGAGTCACTGCAG 1018
Query 1039 GGACATTGTTGCTTGGAATGGGATTATAACAGCGTTTGCAGTGTATGATCCGGAGAGAGC 1098
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1019 GGACATTGTTGCTTGGACGGGGATTATAACAGCGTTTGCAGTGTATGATCCAGAGAGGGC 1078
Query 1099 TATTCATCTCTTTGGTCAGTTACGTCAGGAGAAGCTAAGCCCTGACTGGTATACTTTCTC 1158
||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1079 TATTCTTCTATTTGGTCAGTTACGTCACGAGAAGCTAAGCCCTGACTGGTATACTTTCTC 1138
Query 1159 AAGTGTACTAAAAGCTTGTGCAGGACTTGTCACTGCTCGCCATGCTTTGTCTATACACGC 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAGTGTACTAAAAGCTTGTGCAGGACTTGTCACTGCTCGCCATGCTTTGTCTATACACGC 1198
Query 1219 TCAAGTGATCAAGGGTGGTTTTTTGGCTGACACGGTGCTGAACAACTCATTAATCCATGC 1278
|||||||||||||||||||||| | ||||||| ||| |||||||||| |||||||||||
Sbjct 1199 TCAAGTGATCAAGGGTGGTTTTGCGACTGACACAGTGGTGAACAACTCGTTAATCCATGC 1258
Query 1279 GTATGCCAAGTGTGGCTCTCTTGACTTGTGTATGCGTGTATTTGACGATATGGATTCGCG 1338
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1259 GTATGCCAAGTGTGGCTCTCTTGACTTGTGTAAGCGTGTATTTGACGATATGGATTCGCG 1318
Query 1339 GGATGTTGTTTCCTGGAACTCAATGCTCAAGGCTTACTCATTACATGGCCAAGTAGACTC 1398
|||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1319 GGATGTGGTGTCGTGGAACTCAATGCTCAAGGCTTACTCATTGCATGGCCAAGTAGACTC 1378
Query 1399 AATTCTACCAGTCTTTCAGAAAATGGACATCAACCCCGATTCAGCGACTTTCATAGCCCT 1458
|||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct 1379 AATTCTACCAGTCTTTCAGAAAATGGACATTAAGCCTGATTCAGCGACTTTCATAGCTCT 1438
Query 1459 TCTCTCGGCTTGCAGCCACGCAGGACGAGTAGAAGAAGGATTGAGAATATTCAGATCCAT 1518
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1439 TCTCTCGGCTTGCAGCCACGCTGGAAGAGTAGAAGAAGGATTGAGAATATTCAGATCCAT 1498
Query 1519 GTTTGAGAAACCTGAAACTCTTCCTCAGCTAAATCACTACGCTTGTGTGATCGATATGCT 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GTTTGAGAAACCTGAAACTCTTCCTCAGCTAAATCACTACGCTTGTGTGATCGATATGCT 1558
Query 1579 AAGCCGAGCTGAGCGTTTTGCTGAGGCAGAAGAGGTTATCAAGCAGATGCCAATGGACCC 1638
| || |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1559 AGGCAGAGCTGAGCGTTTTGCTGAGGCGGAAGAGGTTATCAAGCAGATGCCAATGGAGCC 1618
Query 1639 AGATGCTGTAGTTTGGATTGCATTATTGGGATCATGTAG-AAAGCACGGTAACACCCGGT 1697
||||||||||||||||| ||||||| |||||||||| || ||| || |||||||| | ||
Sbjct 1619 AGATGCTGTAGTTTGGAGTGCATTACTGGGATCATGCAGGAAA-CATGGTAACACTCAGT 1677
Query 1698 TGGGTAAGTTAGCGGCAGATAAACTTAAAGAGCTAGTCGAACCCACAAACTCAATGAGTT 1757
||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||
Sbjct 1678 TGGGTAAGTTAGCGGCAGATAAACTAAAAGAGATAG---AACCCACAAACTCATTGAGTT 1734
Query 1758 ACATCCAGATGTCAAACATATACAACGCAGAAGGTAGCTTTAACGAAGCCAATCTTAGCA 1817
||||||||||||||||||||||||| || ||| ||||||||||||||| |||| ||||
Sbjct 1735 ACATCCAGATGTCAAACATATACAATGCCGAAAGTAGCTTTAACGAAGGCAATAAAAGCA 1794
Query 1818 TAAAGGAGATGGAAACATGGAGAGTACGGAAAGAACCAGACTTAAGCTGGACAGAGATAG 1877
|||||||||||||||||||| ||||| | |||||||||| ||| ||||||||||||||||
Sbjct 1795 TAAAGGAGATGGAAACATGGCGAGTAAGAAAAGAACCAGGCTTGAGCTGGACAGAGATAG 1854
Query 1878 GAAACAAGGTTCACGAATTCGCATCGGGAGGAAGACACCGTCCGGACAAGGAAGCCGTAT 1937
|||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||| |||
Sbjct 1855 GAAACAAGGTTCACGAATTCACATCAGGAGGAAGACGCCGTCCGGACAGGGAAGCCATAT 1914
Query 1938 ACAGAGAATTGAAGAGACTGATTAGTTGGTTAAAGGAGATGGGTTACGTTCCAGAAATGA 1997
|||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||||
Sbjct 1915 GCAGAGAATTGGAGAGACTGATTAGTCGGTTAAAGGAAATGGGTTATGTTCCAGAAATGA 1974
Query 1998 GGTCAGCTTCACAAGATATAGAAGACGAAGAACAGGAGGAAGATA-ATTTATTACATCAC 2056
||||||||| |||| | || || || || |||||| ||||||| | || |||| ||||||
Sbjct 1975 GGTCAGCTTTACAACAAATTGAGGAGGACGAACAGAAGGAAGA-ACATCTATTGCATCAC 2033
Query 2057 AGCGAGAAACTTGCGTTAGCGTTTGCGGTTATGGAGGGAAGAAAATCGAG-TGATTGTGG 2115
||||||||||| |||||||| |||||||| ||||||||||||||||| || |||||||||
Sbjct 2034 AGCGAGAAACTGGCGTTAGCATTTGCGGTGATGGAGGGAAGAAAATC-AGGTGATTGTGG 2092
Query 2116 TGTGAATTTGATACAGATTATGAAGAACACAAGGATCTGTATTGATTGCCATAACTTCAT 2175
||| ||||||||||| || |||||||||| |||||| |||||||||||||||||||||||
Sbjct 2093 TGTTAATTTGATACAAATAATGAAGAACATAAGGATATGTATTGATTGCCATAACTTCAT 2152
Query 2176 GAAATTAGCTTCTAAGCTTTTGGGAAAAGAGATTCTTATGAGAGACTCGAATCGGTTTCA 2235
||| || || ||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2153 GAAGTTGGCCTCTAAGCTTTTGGGAAAAGAGATTCTTCTAAGAGACTCGAATCGGTTTCA 2212
Query 2236 CCATTTCAAAGATTCTTCTTGCTCCTGTAATGACTACTGGTAA 2278
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2213 CCATTTCAAAGATTCTTCTTGCTCCTGTAATGACTACTGGTAA 2255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85779231740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5