BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71430.1
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926504 jgi|Araly1|926504|scaffold_202065.1 785 0.0
> Ahg926504 jgi|Araly1|926504|scaffold_202065.1
Length=533
Score = 785 bits (425), Expect = 0.0
Identities = 506/543 (93%), Gaps = 13/543 (2%)
Strand=Plus/Plus
Query 104 TGATTTCACCAAAGAAAAATCATGGAAGGGAAAGAAAACTGCAAAGATCTCCTGAAATTG 163
||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 TGATTTCACCAGAGCGAAATCATGGAAGGGAAAGAAAACTGCAAAGATCTTCTGAAATTG 60
Query 164 GAGCTCAAGAATCCATCTTCTTCCTCTGCTATGGATTCAGCACTTTTGATGTGTACGGAT 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGCTCAAGAATCCATCTTCTTCCTCTGCTATGGATTCAGCACTTTTGATGTGTACGGAG 120
Query 224 aagaataagaagaagaagaagaTGGAGGCTCCTCCTCCATCGAAGCCAACGATTGCTCCA 283
|||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 121 AAGAATAAGAAGAAGAAG-AG--GGAGGCTCCTCCTCCATCGAAGCCAACGATTGGTCCA 177
Query 284 GTTCCTAAAAGCCAACTTCTTGGTAAACTTAAAGGCTTCTTGGGGGTTATGGCGGAGGCT 343
||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||
Sbjct 178 GTTCCCAAAAGCCAACTTCTTGGTAAAGTTAAAGGCTTCGTGGGGTTTATGGCGGAAGCT 237
Query 344 AACAAAAAGTCTGAGGCAAACCCAGAAGCTTATAATATCGAAGCACTAACGGGTAACGAA 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AACAAAAAGTCTGAGGCAAACCCAGAAGCTTATAATATCGAAGCACTAACGGGTAACGAA 297
Query 404 TCTGAACTTATCGAGATGGACTTGATGCTCGGTGTCGCTGATCTCAACACGCCTGAAGCA 463
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 TCTGAACTTATCGAGATGGACTTGATGCTCGGTGTCGCTGATCTCAACACACCTGAAGCA 357
Query 464 GTCAGTGCGGCTGAAGCTGCTATTGCCGGCATTGGTCCGGCCGCTGAAAGTGGAGATTCG 523
|||||||||||||| || |||||||| ||||||||||| || |||| |||||||||||||
Sbjct 358 GTCAGTGCGGCTGAGGCAGCTATTGCTGGCATTGGTCCAGCAGCTGTAAGTGGAGATTCG 417
Query 524 AGCAGCGATGATGAGAGTGATAGCGAAAGTGAAGGAGAGGAGAGTAAGAGTGCAGAA--- 580
||||||||||| ||| ||||||||| ||||| |||||||||| |||||||| ||||
Sbjct 418 AGCAGCGATGA-GAG--TGATAGCGACAGTGATGGAGAGGAGAATAAGAGTGAAGAAGAA 474
Query 581 TGTAGCAGAAAACGATCCAAGATCATTGAGCTCTCATAAAATAAAACATGTTGTCTCTTC 640
||||||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||
Sbjct 475 TGTAGCAGAAAACGACCCAATATCATTGAGCTCTCATAAAA-AAAACATGT---CTCTTC 530
Query 641 TCA 643
|||
Sbjct 531 TCA 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26228566896
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5