BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71440.1
Length=1820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476275 jgi|Araly1|476275|fgenesh2_kg.2__1405__AT1G71440.1 2466 0.0
> Ahg476275 jgi|Araly1|476275|fgenesh2_kg.2__1405__AT1G71440.1
Length=1739
Score = 2466 bits (1335), Expect = 0.0
Identities = 1518/1607 (94%), Gaps = 10/1607 (1%)
Strand=Plus/Plus
Query 11 AAAATGAAGGCTGAGTCTAGCAACGAGTCTT-TCATAATCGGGCAGCGAGTCCACTCTCT 69
||||||||||||||||| ||||||||||||| | | |||||| |||||||||||||| ||
Sbjct 1 AAAATGAAGGCTGAGTCAAGCAACGAGTCTTAT-AAAATCGGTCAGCGAGTCCACTCGCT 59
Query 70 CAACGATTCGCGTCGTGTGGGCACCGTGAAATACGTCGGAGATGTGGAGGGATACTCCGG 129
|||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 60 TAACGATCCGCGTCGGGTGGGTACCGTGAAGTACGTCGGAGATGTGGAGGGATACTCCGG 119
Query 130 AACTTGGATCGGCGTTGATTGGGATCAAGACGGTGATGGAAAACATAACGGTTCCGTCAA 189
||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||
Sbjct 120 AACTTGGATCGGCGTTGATTGGGATCAAGACGGCGATGGAAAGCATAACGGTACCGTCAA 179
Query 190 TGGCGTTTTCTACTTTAACGGTCGTTCTCAGAGCTCAGCTTCATTTGTTCGTTCCCAGAA 249
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 TGGCGTTTTCTACTTTAACGGTCGTTCTCAAAGCTCAGCTTCATTTGTTCGTTCCCAGAA 239
Query 250 TCTTAGTCGCGGTATCACATTGCTTCAAGCTTTGGAGCTTAGATACAGAACAATTTCAAC 309
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 TCTTAGTCGTGGTATCACATTGCTTCAAGCTTTGGAGCTTAGATACAGAACAACTTCAAC 299
Query 310 TAAGGACGAAGAAGATGAAATGTATGTTCTCTCTGCTGGGAATAGACGTGTTTCGATTCA 369
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TAAGGACGAAGAAGATGAAATGTATGTTCTTTCTGCTGGGAATAGACGTGTTTCGATTCA 359
Query 370 GCTTTTAGGAGGGGATAAGATCCAGGATAAGTTAAGTCGGTTCGAGGAGCTTACGAGTGC 429
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCTATTAGGAGGGGATAAGATCCAGGATAAGTTAAGTCGGTTCGAGGAGCTTACGAGTGC 419
Query 430 TTCTCTTTCGTATCTTGGTGTTAGTTCTCTTGGAGTTTCATCTGATTTGGGTTCAATTCT 489
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 TTCTCTTTCGTATCTTGGTGTTAGTTCTCTTGGAGTTTCATCTGACTTGGGTTCAATTCT 479
Query 490 ACCAAATTTGAAGCTGCTGGACTTAACTGGAAACTTGATTTCTGACTGGGAGGAGATTGG 549
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 ACCAAATTTGAAGCTACTGGACTTAACTGGAAACTTGATTTCTGACTGGGAGGAAATTGG 539
Query 550 TGCTCTTTGTGAACAGTTACCAGCACTTACAACCCTTAATTTGTCTTGCAATTCTTTGTC 609
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 TGCTCTTTGTGAGCAGTTACCAGCCCTTACAACCCTTAATTTGTCTTGCAATTCTTTGTC 599
Query 610 AAGTGATATCAAGTCTCTGCCACAGTTAAAAAATATCCGTGTTTTGGTTCTGAATAATAG 669
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 AAGTGATATCACCTCTCTGCCACAGTTAAAAAATATACGTGTTTTGGTTCTGAATAATAG 659
Query 670 TGGTCTGAGCTGGACTCAGGTTGAAATTCTTAGGCGCTCGTTACCTGGAATTGAGGAGTT 729
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 TGGTCTGAGCTGGACTCAGGTTGAAATTCTTAGGCGCTCGTTACCTGGACTTGAGGAGTT 719
Query 730 GCATCTGATGGGGAACATGATATCTACCATAACATCCACGTC-CTCATCAGATGATCAAG 788
||||||||||||||| ||||||||| || |||| || || || | | ||||||| |||||
Sbjct 720 GCATCTGATGGGGAATATGATATCTGCCTTAACTTCTACATCTCCC-TCAGATGGTCAAG 778
Query 789 CATTTAACTCTCTGCGGCTACTGAACTTGGATGATAATTGTATTTCCGATTGGAGTGAAG 848
|||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct 779 CATTTAACTCTCTGCGACTTCTAAACTTGGATGATAATTGTATTTCTGATTGGAGTGAAG 838
Query 849 TATTAAAGCTATCTCAACTTCCATGCTTGGAGCAGCTTTACCTGAATAAGAATAAGCTTT 908
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 839 TATTAAAGCTATCTCAACTTCCATGCTTGGAGCAGCTTTACCTGAACAAGAATAAGCTGA 898
Query 909 CACGCATCTTTCAGTCTGTAAATGGCACTGAATCATCAGAGAAAGGCAGCGACCCATTTC 968
||| ||||||||| ||||||||||||| |||||| || ||||| |||| ||||| ||||
Sbjct 899 CACACATCTTTCACTCTGTAAATGGCATTGAATCGCCAAAGAAAAGCAGTGACCCGTTTC 958
Query 969 CTAGTCTGAGTTGTCTTCTTCTAGGAGCCAACAACATTGGCGATTTGGCCTC-AGTAGAC 1027
| |||||| |||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 959 CAAGTCTGCGTTGTCTTCTTCTAGGAGCCAACAGCATTGGCGATTTGGCCTCGA-TAGAC 1017
Query 1028 GCACTGAATGGGTTTCCTCAGTTAGTGGACATCAGGCTTTCGGAAAACCCAATATCTGAT 1087
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1018 GCACTGAATGTGTTTCCTCAGTTAGTGGACATCAGGCTTTCTGAAAACCCAATATCTGAT 1077
Query 1088 CCTGTAAGAGGTGGTGTCCCAAGATTTGTTCTCGTTGCAAGGTTGACAAAAGTACAAGTG 1147
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CCTGTAAGAGGTGGTGTCCCAAGATTTGTTCTCGTTGCAAGGTTGACAAAAGTACAAGTT 1137
Query 1148 CTGAATGGGAGTGAGGTAAGAGCTCGTGAGAAGAAGGATTCTGAGATCCGGTATGTCCGA 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CTGAATGGGAGTGAGGTAAGAGCTCGTGAGAAGAAGGATTCTGAGATCCGGTATGTCCGA 1197
Query 1208 ATGGTGATGTCAAAGTTAAATGACAAGTCTGGGGAGATTGAGCTGCTCCACCCTAGATTT 1267
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1198 ATGGTGATGTCAAAGTTAAATGACAAGTCTGAGGAGATTGAGCTGCTCCACCCTAGGTTT 1257
Query 1268 TATGAACTCAAGAAACTTCATGGAATTGAGGACGAAAGAGCATCAGCTGAGAACAGCGGC 1327
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1258 TATGAACTCAAGAAACTTCACGGAATTGAGGATGAAAGAGCATCAGCTGAGAACAGCGGC 1317
Query 1328 CCTAAGAATATAGCATCTGGACTTATCTCCATTACTCTCAAATGCGTTGGTCCATCAATG 1387
||||| ||||| |||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 1318 CCTAAAAATATGGCATCTGGACTTTTATCCATTGCTCTCAAATGCGTTGGTCCATCAATG 1377
Query 1388 GGTGAAAAACCTCACTTGACAAAGAAGTTACCGGGCAGTATCACGGTTGGAAAGCTGAAG 1447
|||||||| ||| | |||||||| || || ||||||||||||||||| || |||||||||
Sbjct 1378 GGTGAAAAGCCTGAGTTGACAAAAAAATTGCCGGGCAGTATCACGGTCGGGAAGCTGAAG 1437
Query 1448 ATCTTATCTGAGAACTT-TTTCAAGCTCAAGTCCATCAAGCCAAGATTA-TTTCTGCAGG 1505
||| ||| ||||||||| ||| |||||||||||||| |||||||||||| ||| ||||||
Sbjct 1438 ATCCTATGTGAGAACTTCTTT-AAGCTCAAGTCCATTAAGCCAAGATTACTTT-TGCAGG 1495
Query 1506 AAGAGGGCTCACCTTTTCCGACAGCACTCGATGACGAGACTGCAACATTACTTGACGTTG 1565
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1496 AGGAGGGCTCACCTTTTCCGACAGCACTCGATGACGAGACTGCAACATTACTGGACGTTG 1555
Query 1566 GAATCTGCGACGGCTCCACACTTCTTGTTGACGAAGAGAGTTAAGTT 1612
||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1556 GAATCTGCGACGGTTCCACACTTCTTGTTGACGAAGAGAGTTAAGTT 1602
Score = 126 bits (68), Expect = 5e-28
Identities = 130/156 (83%), Gaps = 19/156 (12%)
Strand=Plus/Plus
Query 1655 TTTATTTTATGGATTGTCACTGTGAACATTAATAGTTTATCC-ATCTTTTGCAAGTAACT 1713
||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||
Sbjct 1601 TTTATTTTATGGATTGTCACTGTGAACATTAATAGAT-ATCCCATCTTTTGCAAGTGACT 1659
Query 1714 TGAACCCACGTAAAAACATTAATAGTTCCAGAACCATCATCATCATTGCAAAAGTTTCAT 1773
||||| || || || || | | ||||||||| |||| ||||||||||||
Sbjct 1660 TGAAC--AC--AAGGACC--AA-A-----A---CCATCATCAACATTCCAAAAGTTTCAT 1704
Query 1774 ACAAAGTTaaaaaaaaaTTGAAATTGAGAAGAGACA 1809
||||||| |||||||| |||||||||||||||||||
Sbjct 1705 ACAAAGT-AAAAAAAA-TTGAAATTGAGAAGAGACA 1738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68333899530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5