BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71450.1
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476276 jgi|Araly1|476276|fgenesh2_kg.2__1406__AT1G71450.1 1413 0.0
> Ahg476276 jgi|Araly1|476276|fgenesh2_kg.2__1406__AT1G71450.1
Length=1017
Score = 1413 bits (765), Expect = 0.0
Identities = 941/1023 (92%), Gaps = 24/1023 (2%)
Strand=Plus/Plus
Query 1 ACAACAAACACTCTTGAGCAAAA----AC-TTtgtgtg-cgtgtgtgtgtgtgtTCATGG 54
||||||||||||||||||||||| || |||||||| | | ||||||| |||| ||||
Sbjct 1 ACAACAAACACTCTTGAGCAAAACCTTACTTTTGTGTGTC-TCTGTGTGTTTGTTAATGG 59
Query 55 CTGGTCTTAGGAATTCCGGTAACAGCGACAAAGCGCAAAACGATGGCAAAGGTGTACCAT 114
| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 60 CAGGTCTTAGGAATTCCAGTAACAGCGACAAAGCGCAAAACGATGGGAAAGGTGTACCAT 119
Query 115 CTGCCTACAGAGGAGTCCGGAAGAGAAAATGGGGGAAATGGGTGTCTGAAATCCGTGAAC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTGCCTACAGAGGAGTCCGGAAGAGAAAATGGGGGAAATGGGTGTCTGAAATCCGTGAAC 179
Query 175 CGGGGACCAAGAACCGTATCTGGCTAGGCAGTTTCGAGACTCCTGAAATGGCTGCAACCG 234
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGGGGACAAAGAACCGTATCTGGCTAGGCAGTTTCGAGACTCCTGAAATGGCTGCAACCG 239
Query 235 CATACGACGTGGCAGCATTTCATTTCAGAGGGAGAGAAGCTCGTCTCAACTTCCCTGAGC 294
| || |||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||
Sbjct 240 CCTATGACGTGGCAGCATTCCATTTCAGGGGGCGAGAAGCTCGTCTCAACTTCCCCGAGC 299
Query 295 TCGCCAGCAGCCTTCCACGTCCTGCAGACTCTAGCTCAGACAGCATTCGCATGGCAGTTC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 TCGCCAGCAGCCTTCCACGTCCTGCAGACTCTAGCTCAGACAGCATTCGCATGGCAGCTC 359
Query 355 ATGAGGCAACACTCTGCCGCACCACCGAAGGAACAGAGTCAGCCATGCAAGTGGACAGCT 414
| |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 360 AGGAGGCAACACTCTGCCGCACAACCGAAGGATCAGAGTCAGCCATGCAAGTGAACAGCT 419
Query 415 CAAGCTCCTCCAATGTAGCTCCAACAATGGTCAGACTCTCGCCCAGGGAAATTCAAGCGA 474
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 CAAGCTCCTCCACTGTAGTTCCAACAATGGTCAGACTCTCGCCCACGGAAATTCAAGCGA 479
Query 475 TCAACGAGTCAACTTTGGGATCTCCTACTACAATGATGCATTCAACATACGACCCTATGG 534
||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||
Sbjct 480 TCAACGAGTCAACTTTGGGATCTCCAACTACATTGATGCATTCAACATACGACTCTATGG 539
Query 535 AGTTTGCTAATGATGTGGAGATGAATGCTTGGGAAACATACCAGAGTGACTTTCTTTGGG 594
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTTTGCTAATGATATGGAGATGAATGCTTGGGAAACATACCAGAGTGACTTTCTTTGGG 599
Query 595 ACCCTTAACCCCAAAACCTAACTCATGGAGAGCTTCTACAGCTCAATCTTACAATACCAG 654
||||||| |||||||||| ||||||||||||| |||||||||||||||||| ||||||||
Sbjct 600 ACCCTTAGCCCCAAAACCGAACTCATGGAGAGTTTCTACAGCTCAATCTTAGAATACCAG 659
Query 655 CATAAGTTACTGGCTTAGAATACTTAAATTTATTGAAGTTTAGTTTTCAGAGTCTACCAC 714
|||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 660 CATAAGTTACTGGCCTAGAATGCTTAATTTTATTGAAGTTTAGTTTTCAGAGTCTAGCAC 719
Query 715 AAGGGTTGTTGATTCTGACGTTATAGCAAAGAATAAAGCTCATCAGA-TTTTGGAGGGAA 773
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 720 AAGGGTTGTTGATTCTGACGTTATAGCAAAGAATAAAGTTCATCGGAGTTTTGGAGGGAA 779
Query 774 AGACTCTATGAGCTTGATGGGTCCCTGAAA-GGACCTCTTCACAAATATTTTTAAAtttt 832
||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 780 GGACACTATGAGCTTGATGGGTCCCTGAAAAGGACCTCTTCACAAATATTTT-AA-TTTT 837
Query 833 tttGTTACTA-G-TAGAAACATAGATTATG--AGGTGTGACTTATTATTATT-TTTTACA 887
||| ||| || | | | | ||||| || ||||||||||||| |||||| |||| ||
Sbjct 838 TTT-TTAATAAGCT-GTGTTAGAGATTGTGTGAGGTGTGACTTATAATTATTATTTT-CA 894
Query 888 ATTGTTTGTTACCTC-AT--TGATGTATTTGATTTGATATAATATTGAATGGTTTCCTGA 944
||||||||||||| | || | ||||||||| |||||||| |||||| |||| ||||| |
Sbjct 895 ATTGTTTGTTACCCCCATGCTTATGTATTTGGTTTGATATTATATTGTATGGATTCCTCA 954
Query 945 AAGCTATAAGATATTTT-ATTCTTA-CTAGACTTGTGTTCTCTCTTGACTTTCTTCCCTT 1002
|| |||||||||||||| ||||| | | |||||| ||||||||||||||| |||||||||
Sbjct 955 AATCTATAAGATATTTTTATTCTAAACAAGACTTCTGTTCTCTCTTGACTCTCTTCCCTT 1014
Query 1003 AAC 1005
|||
Sbjct 1015 AAC 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5