BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71460.1
Length=2333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476277 jgi|Araly1|476277|fgenesh2_kg.2__1407__AT1G71460.1 3489 0.0
> Ahg476277 jgi|Araly1|476277|fgenesh2_kg.2__1407__AT1G71460.1
Length=2309
Score = 3489 bits (1889), Expect = 0.0
Identities = 2180/2320 (94%), Gaps = 22/2320 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGTAGTGTCGTCTCTCGGAATCCGAGACCTCCCGGCGTCCCTCTCCGTGACGACG 60
||||||||||| |||||||||||| |||||||||| || ||||||| ||||||||||||
Sbjct 1 ATGGAAGTAGTTTCGTCTCTCGGATTCCGAGACCT-CC--CGTCCCTTTCCGTGACGACG 57
Query 61 AGTCTCAACCACCGTCCTCATCGTTCCGATAAAGATGGCGCTCCGGCGAAATCTCCGATT 120
|| ||||||||||||||| | |||||| ||||||| || |||||||||||||||||| ||
Sbjct 58 AGCCTCAACCACCGTCCTTACCGTTCCTATAAAGACGGAGCTCCGGCGAAATCTCCGTTT 117
Query 121 AGACCAAGCAGAACTAGACGACCTTCCACTTCTCCCGCCAAAAAGCCGAAACCTTTTAGG 180
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 118 AGACCCAGCAGAACTAGACGACCTTCCACTTCTCCCGCCAAAAAGCCCAAACCTTTTCGG 177
Query 181 GAAAGAGATGCTTTCCCTTCTTCTCTTCCTCTCCACTCCAAGAA-CCCCTACATTATCCA 239
||||||||||||||||||||||||||||||||||| ||||| || || | ||| |||||
Sbjct 178 GAAAGAGATGCTTTCCCTTCTTCTCTTCCTCTCCATTCCAAAAATCCAC-ACAGCATCCA 236
Query 240 CAGAGATATTCAAATTTTTGCGAGGCAGAACAATCTCGAAGTCGCTCTCACGATTCTTGA 299
|||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 237 CAGAGACATTCAAAGGTTTGCGAGGAAGAACAATCTCGAAGACGCTCTCACGATTCTTGA 296
Query 300 TTATCTCGAACAGAGAGGGATTCCTGTAAATGCGACAACTTTCTCTGCTCTTTTAGAGGC 359
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||
Sbjct 297 TTATCTCGAACAGAGAGGAATTCCTGTAAATGCGACAACTTTCTCCGCTCTTTTAGCCGC 356
Query 360 GTGTGTTCGCCGGAAGTCGTTGCTTCACGGTAAACAAGTCCATGTTCATATACGTATTAA 419
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 357 GTGTGTTCGCCGGAAGTCGTTACTTCACGGTAAGCAAGTCCATGTTCATATCCGTATTAA 416
Query 420 TGGGTTGGAGAGTAATGAGTTTCTAAGGACCAAGCTTGTTCATATGTATACTGCTTGTGG 479
|||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 417 TGGGTTGGAGAGTAATGAGTTTATTAGGACCAAGCTTGTTCATATGTACACTGCTTGTGG 476
Query 480 TTCGGTTAAAGATGCACAGAAGGTGTTCGATGAAAGTACTAGCTCAAATGTTTACTCTTG 539
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 477 TTCGGTTAGAGATGCACAGAAGGTGTTCGACGAAAGTACTAGCTCAAATGTTTATTCTTG 536
Query 540 GAATGCGTTGCTTAGAGGGACTGTTATATCAGGGAAGAAGCGGTATCAAGATGTTCTTTC 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 GAATGCGTTGCTTAGAGGGACTGTGATATCAGGGAAGAAGCGGTATCAAGATGTTCTTTC 596
Query 600 TACGTTTACAGAAATGAGAGAGCTTGGTGTTGATTTGAATGTTTATAGTTTATCTAATGT 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 597 TACGTTTACAGAAATGAGAGAGCTTGGTGTTGATTTGAATGTTTATAGTTTCTCTAATGT 656
Query 660 GTTTAAGAGTTTTGCTGGTGCATCTGCTTTGAGACAGGGATTGAAGACGCATGCACTTGC 719
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 657 GTTTAAGAGTTTTGCTGGTGCATCTGCTTTGAGACAGGGGTTGAAGACGCATGCCCTTGC 716
Query 720 GATTAAGAATGGTTTGTTTAATAGTGTCTTTCTTAAGACTTCTCTTGTTGATATGTATTT 779
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 717 GATTAAGAATGGTTTGTTTAACAGTGTCTTTCTTAAGACTTCTCTTGTTGATATGTATTT 776
Query 780 TAAGTGTGGTAAAGTAGGGCTTGCACGTCGAGTTTTTGATGAGATTGTAGAGAGAGATAT 839
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 777 CAAGTGTGGTAAAGTAGGGCTTGCACGTCGAGTTTTTGATGAGATTTTAGAGAGAGATAT 836
Query 840 AGTTGTTTGGGGGGCGATGATTGCTGGATTGGCTCACAATAAAAGGCAGTGGGAAGCGTT 899
||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 837 AGTCGTTTGGGGAGCTATGATTGCTGGATTGGCTCACAATAAACGGCAGTGGGAAGCATT 896
Query 900 GGGACTGTTTAGGACGATGATTAGTGAAGAAAAGA-TATATCCAAACTCAGTTATACTTA 958
||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 897 GGGGTTGTTTAGGTCGATGATTAGTGAAGAAG-GAATATATCCAAACTCAGTTATACTTA 955
Query 959 CAACGATTCTTCCCGTACTTGGGGATGTTAAGGCACTGAAACTGGGGAAGGAGGTCCATG 1018
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 956 CAACGATTCTTCCCGTGCTTGGGGATGTTAAGGCACTGAAACTGGGGAAGGGGGTCCATG 1015
Query 1019 CCCATGTATTGAAA-TCGAAGAATTACGTGGAACAGCCGTTTGTTCACTCTGGTTTGATT 1077
|||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1016 CCCATGTATTGAAAAT-GAAGAATTATTTGGAACAGCCGTTTGTTCACTCTGGTTTGATT 1074
Query 1078 GATTTATACTGCAAGTGTGGGGATATGGCTTCTGGGAGACGTGTGTTCTATGGATCCAAA 1137
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 1075 GATTTATACTGCAAGTGTGGGGATATGGTTTCTGGGAGACGGGTGTTCTATGGCTCCAAA 1134
Query 1138 CAGAGGAATGCCATATCTTGGACTGCATTGATGTCTGGATACGCAGCCAACGGTAGATTT 1197
|||||||||||||| |||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct 1135 CAGAGGAATGCCATTTCTTGGACTGCACTGATGTCTGGGTACGCAGCCAACGGAAGATTT 1194
Query 1198 GATCAAGCTTTGAGGTCGATTGTTTGGATGCAGCAGGAAGGTTTTAGGCCAGATGTTGTT 1257
||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |||
Sbjct 1195 GATCAAGCTTTGAGGTCGATTGTTTGGATGCAGCAGGAAGGCTTTAAGCCAGACGTCGTT 1254
Query 1258 ACAATTGCTACTGTTCTTCCTGTTTGCGCAGAGCTGAGGGCTATAAAGCAAGGAAAGGAG 1317
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1255 ACAATTGCTACTGTTCTTCCTGTTTGTGCAGAGCTGAGGGCTATAAAGCAAGGAAAGGAG 1314
Query 1318 ATTCATTGTTATGCTTTAAAGAATCTCTTCTTGCCGAATGTATCCCTGGTCACTTCCTTG 1377
||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 1315 ATTCACTGTTATGCTTTAAAGAATCTCTTCTTGCCAAATGTATCTTTAGTCACTTCCTTG 1374
Query 1378 ATGGTGATGTACTCAAAGTGCGGTGTTCCAGAGTATCCTATCAGACTGTTTGACAGGTTG 1437
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1375 ATGGTGATGTACTCAAAGTGCGGTGTTCCAGAGTATCCTGTGAGACTGTTTGACAGGTTG 1434
Query 1438 GAACAAAGGAATGTGAAAGCATGGACCGCTATGATTGACTGCTATGTGGAAAATTGTGAT 1497
|| ||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||
Sbjct 1435 GAGCAAAGAAATGTGAAAGCATGGACCGCCATGATCGACTGCTATGTGGAAAATGGTGAT 1494
Query 1498 TTAAGAGCAGGGATTGAGGTATTCAGATTGATGCTGTTATCAAAACACAGGCCAGATTCT 1557
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1495 TTAAGAGCAGGGATTGAGGTATTCAGATCAATGCTGTTATCAAAGCACAGGCCAGATTCT 1554
Query 1558 GTTACGATGGGTAGGGTTTTGACTGTTTGCAGTGATCTCAAAGCATTAAAGTTGGGGAAA 1617
||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1555 GTTACAATGGGTAGGGTTTTGACTGTTTGCAGTGACCTCAAAGCATTAAAGCTGGGGAAG 1614
Query 1618 GAGCTTCATGGGCACATTCTGAAAAAGGAATTTGAGTCGATCCCATTTGTTTCTGCAAGA 1677
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1615 GAGCTTCATGGGCACATTCTGAAAAAGGAATTTGAGTCTATCCCATTTGTTTCTGCAAAA 1674
Query 1678 ATCATCAAGATGTATGGAAAATGTGGAGATCTCAGAAGTGCTAATTTCTCTTTCGATGCT 1737
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1675 ATCATCAAGATGTATGGACAATGTGGAGATCTCAGAAGTGCTAATTTCTCTTTTGATGCT 1734
Query 1738 GTTGCTGTCAAGGGCTCTCTGACATGGACCGCCATTATAGAGGCTTATGGATGCAATGAA 1797
|||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 1735 GTTGTTGTCAAGGGCTCTCTGACATGGACCGCCATTATAGAGGCTTATGGCTACAATGGA 1794
Query 1798 CTCTTCAGGGATGCAATAAACTGTTTTGAGCAAATGGTATCAAGAGGGTTTACTCCCAAC 1857
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1795 CGCTTCAGGGATGCAATAAAGTGTTTTGAGCAAATGGTATCAAGAGGGTTTACTCCCAAC 1854
Query 1858 ACCTTCACATTTACAGCAGTTTTATCTATTTGCAGTCAAGCCGGATTTGTTGATGAAGCT 1917
|| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1855 ACATTCACATTTACAGCAGTTTTATCTATTTGCAGCCAAGCCGGATTTGCTGATGAAGCT 1914
Query 1918 TATCGCTTCTTCAACTTGATGCTCCGGATGTACAATTTGCAGCCATCAGAAGAGCATTAT 1977
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1915 TATCGCTTCTTCAACTTGATGCTCCGGATGTACAATTTGCATCCATCAGAAGAGCATTAT 1974
Query 1978 TCACTGGTCATTGAACTTCTCAATCGGTGTGGTCGTGTTGAAGAGGCACAAAGACTTGCG 2037
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct 1975 TCACTGGTCATTGAACTTCTCAATCGGTTTGGTCGTGTTGAAGAGGCGCAAAGACTTGAG 2034
Query 2038 GTCATGAGTTCCTCGTCATCCCTACAGACCTGACTGCAGATTCAGACATCTTCTTTGCTT 2097
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||| | | |
Sbjct 2035 GTCATGAGTTCCTCGTCATCCCTACAAACCTGACTGTAGATTCAGACAACTT-T--GAAT 2091
Query 2098 TTTCTCAAAGCCACCAAGTAAGT-TGCTCGAAGAGTTATGAGAAGTATATTCTGTTCTCT 2156
||||||||||||||||||||||| | |||||||| || ||||||||||||||||||||||
Sbjct 2092 TTTCTCAAAGCCACCAAGTAAGTGT-CTCGAAGATTTCTGAGAAGTATATTCTGTTCTCT 2150
Query 2157 TGTTTCCAAGAACTTGCATTAATAGTGCTGTATATACTGAATTTGGTTCCAGAA-T---- 2211
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 2151 TGTTTCCAAGAACTTGCATTAATAGTACTGTATATACTGAATTTGGTTCCAGAAATTAAT 2210
Query 2212 --GATTGAATTTTGTTCAACTTGTAAAAATCTTGCAGTATCAAATGTAGAGTTTTCTTAA 2269
||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2211 TAGATTGAACTT-GTTCAACTTGTAAAAATCTTGCAGTATCAAATGTAGATTTTTCTTAC 2269
Query 2270 GATTAGTTAAGGGAAGAAAGTCAAGAGAGAACACAAGTCT 2309
| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 2270 GGTTAGTTAAGGGAAGAGAGTCAAGAGAGAACAGAAGTCT 2309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87874195215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5