BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71490.1
Length=2921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476279 jgi|Araly1|476279|fgenesh2_kg.2__1409__AT1G71490.1 3570 0.0
Ahg943111 jgi|Araly1|943111|scaffold_603655.1 597 1e-169
Ahg472526 jgi|Araly1|472526|fgenesh2_kg.1__2480__AT1G22830.1 414 2e-114
> Ahg476279 jgi|Araly1|476279|fgenesh2_kg.2__1409__AT1G71490.1
Length=2721
Score = 3570 bits (1933), Expect = 0.0
Identities = 2338/2531 (92%), Gaps = 38/2531 (2%)
Strand=Plus/Plus
Query 416 AGTCTTGTT-CCAAGAACTTTCC-AAACCCACATTGAACCAATGCTGAGTGAGAGTCTTT 473
||||| || |||||||| | || ||||||||| |||| ||||||||| |||||||||||
Sbjct 204 AGTCTAATTCCCAAGAAC-TCCCAAAACCCACAATGAATCAATGCTGATTGAGAGTCTTT 262
Query 474 TCAAATCTCTTGGACATTTGGCCAGCCACGGTCATTTGCACGACGCTTTCAAAACGTTTT 533
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 TTAAATCTCTTGGACATTTGGCCAGCCACGGTCATTTGCACGACGCTTTCAAAACGTTTT 322
Query 534 CTCTTCTTCGTCTTCAATC-T-T-CTTCTGCAGTTTCAGATGACCTCGTTTTGCATTCCG 590
||||||||||||||||||| | | ||||||||||||||| ||| | |||||||||||||
Sbjct 323 CTCTTCTTCGTCTTCAATCTTCTCCTTCTGCAGTTTCAGGTGATGTTGTTTTGCATTCCG 382
Query 591 CGGCTTCCCTTTTATCCGCTTGCGTTGATGTTCGTGCATTTTTAGCAGGGG-TGCAAGTT 649
||||||||||||||||||||||||||||||||| ||||||| | || |||| ||||| ||
Sbjct 383 CGGCTTCCCTTTTATCCGCTTGCGTTGATGTTCTTGCATTTGT-GCCGGGGCTGCAAATT 441
Query 650 CACGCTCACTGTATTTCGTCGGGTGTCGAATATCACTCTG-TGTTAGTCCCAAAGCTGGT 708
|||||||||||| ||||||| ||||| ||||||||||||| | || ||||||||||||||
Sbjct 442 CACGCTCACTGTGTTTCGTCCGGTGTGGAATATCACTCTGCT-TTGGTCCCAAAGCTGGT 500
Query 709 TACCTTTTACTCTGCTTTCAATCTCCACAATGAAGCTCAATCGATTATTGAGAACTCTGA 768
||| |||||||||||||| ||||| |||| |||||||||||||||| ||||||||| ||
Sbjct 501 TACTTTTTACTCTGCTTTTAATCTTCACAGGGAAGCTCAATCGATTAATGAGAACTCAGA 560
Query 769 CATTTTGCATCCCTTACCTTGGAATGTGCTCATTGCTTCGTATGCCAAGAACGAGCTTTT 828
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 TATTTTGCATCCCTTACCTTGGAATGTGCTCATTGCTTCGTATGCCAAGAACGAGCTTTT 620
Query 829 TGAGGAGGTTATTGCTGCTTACAAGAGAATGGTGAGCAAGGGAATCCGACCCGATGCCTT 888
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 621 TGAGGAGGTTGTTGCTGCTTACAAGAGAATGGTGAGCAAGGGAATTCGACCCGATGCCTT 680
Query 889 CACTTATCCGTCTGTTCTTAAGGCTTGTGGTGAAACACTTGACGTTGCCTTTGGAAGGGT 948
|||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 681 CACTTATCCGTCTGTTCTCAAGGCCTGTGGTGAAACACTTGACGTTGCCTCTGGAAGAGT 740
Query 949 GGTTCATGGTTCCATCGAGGTTAGCTCTTACAAGTCCAGCTTGTATGTTTGTAATGCATT 1008
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 741 GGTTCATGGTTCCATCGAGGTTAGCTCTTACAAGTGCAGCTTGTATGTTTGCAATGCATT 800
Query 1009 GATCTCTATGTATAAAAGGTTTAGAAATATGGGTATTGCTCGGAGGTTGTTTGATCGA-A 1067
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | |
Sbjct 801 GATCTCTATGTATAAAAGGTTTGGAAATGTGGGTATTGCTCGGAGGTTGTTTGATC-ATA 859
Query 1068 TGTTTGAAAGGGATGCTGTCTCATGGAATGCAGTGATAAACTGTTATGCTTCGGAAGGCA 1127
||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |||||
Sbjct 860 TGTCTGAAAGGGATGCTGTCTCATGGAATGCAGTTATAAACTGTTATACTTCGGTAGGCA 919
Query 1128 TGTGGAGTGAAGCGTTTGAGCTTTTCGATAAAATGTGGTTTTCAGGTGTTGAGGTCAGTG 1187
||||||||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||
Sbjct 920 TGTGGAGTGAAGCGTTTGAGCTTTTTGATAAAATGAGGTTCTCAGGTGTTGAATTCAGTG 979
Query 1188 TCATAACTTGGAATATTATTTCTGGAGGTTGTTTGCAAACAGGAAATTATGTAGGAGCTT 1247
|||||||||||||||||||||||||||||| |||||| |||||||| |||| ||||||||
Sbjct 980 TCATAACTTGGAATATTATTTCTGGAGGTTATTTGCATACAGGAAACTATGCAGGAGCTT 1039
Query 1248 TGGGTTTGATCTCTAGGATGAGAAATTTTCCTACGAGCTTAGATCCTGTGGCTATGATTA 1307
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1040 TGGGTTTGATCTCTAGGATGAGAAATTTCCCCACGAGCTTAGATCCTGTGGCTATGATTA 1099
Query 1308 TTGGTTTGAAGGCTTGCTCTCTCATAGGAGCAATACGATTGGGAAAAGAGATTCACGGTC 1367
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 TTGGTTTGAAGGCTTGCTCACTCATAGGAGCAATACGATTGGGAAAAGAGATTCACGGTC 1159
Query 1368 TTGCTATTCACAGTTCTTATGATGGGATTGACAATGTTCGAAACACGTTGATCACAATGT 1427
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TTGCTATTCACCGTTCTTACGATGGGATTGACAATGTTCGAAACACGTTGATCACAATGT 1219
Query 1428 ACTCAAAATGCAAAGACCTTAGGCACGCCTTAATAGTGTTTCGACAGACTGAAGAAAATA 1487
||||||||||| | ||||||||| ||||||| |||||||||| | |||||||||||||||
Sbjct 1220 ACTCAAAATGCGATGACCTTAGGAACGCCTTTATAGTGTTTCAAAAGACTGAAGAAAATA 1279
Query 1488 GTTTGTGTACTTGGAACTCTATCATTTCCGGTTATGCGC-AGCTGAACAAATCAGAAGAA 1546
|||||||||||||||||||||| |||||||||||||||| || |||| ||||||||||||
Sbjct 1280 GTTTGTGTACTTGGAACTCTATTATTTCCGGTTATGCGCAAG-TGAATAAATCAGAAGAA 1338
Query 1547 GCCTCTCACCTGCTGAGGGAGATGTTGGTTGCTGGCTTTCAGCCAAATTCCATTACACTA 1606
|||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1339 GCCTCTTACCTGCTGAGGGAGATGTTGCTTGCTGGCTTTCAGCCAAATTTCATTACACTT 1398
Query 1607 GCAAGCATTCTCCCTCTTTGTGCTCGGATTGCAAACCTGCAACATGGAAAAGAGTTTCAT 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 GCAAGCATTCTCCCTCTTTGTGCTCGGATTGCAAACCTGCAACATGGAAAAGAGTTTCAT 1458
Query 1667 TGCTACATCCTGAGGCGCAAGTGCTTCAAGGACTATACAATGCTGTGGAACTCCCTTGTT 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 TGCTACATCCTGAGGCGCAAGTGCTTCAAGGACTATACAATGCTGTGGAACTCCCTTGTT 1518
Query 1727 GATGTTTATGCAAAATCGGGAAAGATTGTAGCTGCAAAGCAAGTATCTGATTTGATGAGC 1786
||||||||||||||||| ||||| ||||||||||| |||||||||||| || ||||||||
Sbjct 1519 GATGTTTATGCAAAATCAGGAAAAATTGTAGCTGCGAAGCAAGTATCTAATCTGATGAGC 1578
Query 1787 AAAAGAGACGAAGTAACATACACTTCCTTGATAGATGGATACGGAAATCAAGGTGAAGGG 1846
||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1579 GAAATAGACGAAGTAACGTACACTTCCTTGATAGATGGATACGGAAATCAGGGTGAAGGG 1638
Query 1847 GGAGTAGCCTTGGCCCTGTTCAAGGAGATGACCAGATCTGGTATTAAACCTGACCATGTA 1906
|||| ||||||||||||||| | ||||||| ||||||||||||||||||||||| ||||
Sbjct 1639 CGAGTTGCCTTGGCCCTGTTCGACGAGATGATCAGATCTGGTATTAAACCTGACCCTGTA 1698
Query 1907 ACCGTGGTTGCAGTTCTATCAGCCTGCAGTCATTCCAAGTTAGTCCATGAAGGTGAAAGG 1966
||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1699 ACCATGGTTGCAGTTCTGTCAGCCTGCAGTCATTCCAAGTTAGTCCATGAAGGCCAAAGG 1758
Query 1967 CTGTTTATGAAGATGCAGTGTGAGTATGGTATACGTCCTTGTCTTCAACATTTTTCTTGT 2026
|| ||||||||||||||| | ||||||||||||| |||||||||||||| |||||||||
Sbjct 1759 CTATTTATGAAGATGCAGCCTAAGTATGGTATACGGCCTTGTCTTCAACACTTTTCTTGT 1818
Query 2027 ATGGTTGATCTCTATGGCAGAGCAGGTTTCCTAGCAAAAGCCAAAGACATAATTCACA-A 2085
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
Sbjct 1819 ATGGTTGATCTCTATGGCAGAGCGGGTTTCCTAGCGAAAGCCAAAGACATAATTCACAGA 1878
Query 2086 TATGCCATATAAGCCATCCGGTGCCACGTGGGCTACCCTACTGAACGCGTGTCACATCCA 2145
|||||| || |||||||||||||||| ||||| || ||||||||||| |||||||||||
Sbjct 1879 -ATGCCACATGAGCCATCCGGTGCCACATGGGCAACTCTACTGAACGCTTGTCACATCCA 1937
Query 2146 TGGGAACACACAGATTGGTAAATGGGCAGCAGAAAAGCTCCTGGAGATGAAGCCAGAGAA 2205
||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1938 CGGGAACACAGAGATTGGTAAATGGGCTGCAGAAAAGCTTTTGGAGATGAAGCCAGAGAA 1997
Query 2206 CCCGGGATACTACGTGTTAATTGCAAATATGTATGCAGCTGCTGGTTCTTGGAGCAAGCT 2265
|||||||||||| || || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1998 CCCGGGATACTATGTATTGATTGCAAATATGTATGCAACTGCTGGTTCTTGGAGCAAGCT 2057
Query 2266 TGCTGAAGTGAGGACTATAATGAGGGACTTGGGTGTGA-AAAAGGATCCTGGCTGTGCTT 2324
|||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 2058 TGCTGAAGTGAGGACTATCATGAGGGACTTGGGTGTGAGAAAAG-ATCCTGGGTGTGCTT 2116
Query 2325 GGATCGACACAGATTCTGGATTTTCACTGTTTTCGGTGGGGGACACATCAAGCCCT-GAA 2383
||||| | ||||||||||| ||||||||||||| ||||||||||||||||| |||| ||
Sbjct 2117 GGATCAATACAGATTCTGGGTTTTCACTGTTTTTGGTGGGGGACACATCAAACCCTCGA- 2175
Query 2384 GCATGTAATACTTATCCTCTATTAGATGGACTGAATCAGCTGATGAAAGACAATGCTGGT 2443
|||| | || |||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 2176 GCATCTGATGCTTATCCTCTGTTAGATGGACTGAATCAGCTGATGAAAGACACTGCTGGT 2235
Query 2444 TATGCCATCAATAAGGTGCAAAGTTCAGATGAAGAACTTCTTCAAGAAATGGGATGAAGG 2503
||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 2236 TATGCCATCAACGAGGAGCAAAGTTCAGATGAAGAACTTCTTCAAGAAATAGGATGAAAG 2295
Query 2504 TGAA----GA-G--CTGAGGATGATCAACTGGAGCTTTATTTAGTTAATAGCACATAGT- 2555
||| | | |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2296 TGACCCTCGTCGATCTGAGGATGATCAACTGGAGATTTATTTAGTTAATAGCACAT-GTT 2354
Query 2556 CTATATACGCCTGCATATCACCAGACTGAGAACAAGTTGGATACACATGACAAGTTCTAG 2615
||||||||||||||| |||| ||||| || | |||||||||||| ||||||| ||||||
Sbjct 2355 CTATATACGCCTGCACATCATCAGACCGACATGAAGTTGGATACATATGACAACTTCTAG 2414
Query 2616 TATATACATTAACTA-AAATTGGACAATGGTGGGG-ATTGCTGCGGAAGTATTTTTCCTA 2673
||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 2415 TATATACATTAAC-ACAAATTGGACAATGGTGGGGGATTGCTGCCGAAGTATTTTTCCTA 2473
Query 2674 TATAACACAAAGAAAAC-TTATATT-GTGAGCTGATTCACTTCATCGAGCAAGAGCTTTG 2731
| || |||||||||||| || |||| |||||||||||||||||||| ||||| ||| ||
Sbjct 2474 TTTACCACAAAGAAAACCTT-TATTTGTGAGCTGATTCACTTCATCAAGCAAAAGCGTTA 2532
Query 2732 TAATGCCATCAGAATTGGTCGGCCAGTTGAGGAAATTTCTGCAGCAGCCAGGTAACTCCC 2791
|| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2533 TAGTTACATCAGAATTGGTCAGCCAGTTGAGGAAATTTCTGCAGCAGCCAGGTAACTCCC 2592
Query 2792 TTTATAGCAGCCTGAATACACAAAATGCAAAAGCTGTTAAATCTT-CATTACCTCTGCAA 2850
|||||||||||||||| ||||||| |||||||| |||| ||| || |||||| |||||||
Sbjct 2593 TTTATAGCAGCCTGAAGACACAAA-TGCAAAAGATGTTGAAT-TTGCATTACGTCTGCAA 2650
Query 2851 TTTCAAACACATCCACACAATCAAAATTGATAGTAGCTCATGTTACCAGAACTGTTTCTC 2910
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2651 TTTCAAATGCATCCACACAATCAAAATTAATAGTAGCTCATGTTACCAGAACTGTTTCTC 2710
Query 2911 CAGGTTTGATT 2921
|||||||||||
Sbjct 2711 CAGGTTTGATT 2721
Score = 209 bits (113), Expect = 8e-53
Identities = 190/224 (85%), Gaps = 17/224 (8%)
Strand=Plus/Plus
Query 40 TCTTGTTGCGTTTTTTCGCGCGCATTCTTCCGCTTTGCTTTG-TTGTTCCAATATC--TC 96
||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct 1 TCTCGTTGCGTTTTTTCGCGCGCATTCTTCCACTTTGCTTTGTTTGTTCCAATATCTATC 60
Query 97 TCTCTTACCTCTGTTTCGTT-ATTCTCAATC--ATATAGGTTCTGCTATGTATATACTCT 153
|||||||||| |||||| || |||||||||| |||||| |||||||||| |||||||||
Sbjct 61 TCTCTTACCTATGTTTCATTCATTCTCAATCATATATAGATTCTGCTATGGATATACTCT 120
Query 154 CAGCTCTTAGGGTTCAAATGTGTATATAGTATGGTTCAGCAATCAGCACACCACGTGTTC 213
| ||| || ||||| || |||||| | |||| || | | ||||||||||||
Sbjct 121 CTGCTTTTCGGGTTTAAGTGTGTAGAAAGTA---TT--G------GTTCACCACGTGTTC 169
Query 214 GATGATATGCTTCAATGAAGTTTTCTCAACTTGTAGTCTTATTC 257
|||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 170 GATGATATGCTTCAATGAAGTTTTCTCACCTTGTAGTCTAATTC 213
> Ahg943111 jgi|Araly1|943111|scaffold_603655.1
Length=481
Score = 597 bits (323), Expect = 1e-169
Identities = 411/453 (91%), Gaps = 8/453 (2%)
Strand=Plus/Plus
Query 438 AAACCCACATTGAACCAATGCTGAGTGAGAGTCTTTTCAAATCTCTTGGACATTTGGCCA 497
|||||||||||||| ||||||||| |||||||||||| ||||||||||| ||||| ||||
Sbjct 4 AAACCCACATTGAATCAATGCTGATTGAGAGTCTTTTTAAATCTCTTGGGCATTTAGCCA 63
Query 498 GCCACGGTCATTTGCACGACGCTTTCAAAACGTTTTCTCTTCTTCGTCTTCAA---TCTT 554
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 64 GCCATGGTCATTTGCACGATGCTTTCAAAACGTTTTCTCTTCTCCGTCTTCAATCTTCTT 123
Query 555 CTTCTGCAGTTTCAGATGACCTCGTTTTGCATTCCGCGGCTTCCCTTTTATCCGCTTGCG 614
||||||||||||||| |||| | |||||||| ||||||||||||||||||||| || |
Sbjct 124 CTTCTGCAGTTTCAGGTGACGTTATTTTGCATAGCGCGGCTTCCCTTTTATCCGCGTGTG 183
Query 615 TTGATGTTCGTGCATTTTTAGCAGGGG-TGCAAGTTCACGCTCACTGTATTTCGTCGGGT 673
||||||||||||||||| | || |||| ||||| ||||||| |||||| |||||||||||
Sbjct 184 TTGATGTTCGTGCATTTGT-GCCGGGGCTGCAAATTCACGCGCACTGTGTTTCGTCGGGT 242
Query 674 GTCGAATATCACTCTG-TGTTAGTCCCAAAGCTGGTTACCTTTTACTCTGCTTTCAATCT 732
|||||||||||||||| | |||||||||||||||||||| |||||||||||||| |||||
Sbjct 243 GTCGAATATCACTCTGCT-TTAGTCCCAAAGCTGGTTACTTTTTACTCTGCTTTTAATCT 301
Query 733 CCACAATGAAGCTCAATCGATTATTGAGAACTCTGACATTTTGCATCCCTTACCTTGGAA 792
|||| || ||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 302 TCACAGTGTAGCTCAATCTATTATTGAGAACTCAGACATTTTGCATCCCTTACCAAGGAA 361
Query 793 TGTGCTCATTGCTTCGTATGCCAAGAACGAGCTTTTTGAGGAGGTTATTGCTGCTTACAA 852
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 362 TGTGCTCATTGCTTCGTATGCCAAGAACGAGCTTTTTGAGGAGGTTGTTGCTGCTTACAA 421
Query 853 GAGAATGGTGAGCAAGGGAATCCGACCCGATGC 885
||||||||| |||||| |||| ||||||||||
Sbjct 422 GAGAATGGTTAGCAAGA-AATCTGACCCGATGC 453
> Ahg472526 jgi|Araly1|472526|fgenesh2_kg.1__2480__AT1G22830.1
Length=2335
Score = 414 bits (224), Expect = 2e-114
Identities = 536/685 (78%), Gaps = 27/685 (4%)
Strand=Plus/Plus
Query 576 TCGTTTTGCATTCCGCGGCTTCCCTTTTATCCGCTTGCGTTGATGTTCGTGCA-TTT-TT 633
|||||||| |||| || ||||| |||||||| | || || | | || ||| | ||| ||
Sbjct 490 TCGTTTTGTATTCAGCAGCTTCTCTTTTATCTACCTGTGTGGGTTTTAGTG-AGTTTGTT 548
Query 634 AGCAGGGGTGCAAGTTCACGCTCACTGTATTTCGTCGGGTGTCGAATATCACTCTGTGTT 693
| ||| |||| |||| ||||| ||||| || |||||| | || | | || |||| ||
Sbjct 549 -CCTGGGCAGCAAATTCATGCTCATTGTATCTCCTCGGGTTTGGATTTTGACCCTGTTTT 607
Query 694 AGTCCCAAAGCTGGTTACCTTT-TACTCTGCTTTCAATCTCCACAATGAAGCTCA-ATCG 751
||||||||| |||||| |||| ||||||||||| ||||| | | |||||||| | |
Sbjct 608 GGTCCCAAAGTTGGTTA-CTTTCTACTCTGCTTTTAATCTTCTTGACGAAGCTCAGA-CC 665
Query 752 ATTATTGAGAACTCTGACATTTTGCATCCCTTACCTTGGAATGTGCTCATTGCTTCGTAT 811
|||| ||||||||||||||||||||||||||| || ||||||||||| |||| |||||||
Sbjct 666 ATTACTGAGAACTCTGACATTTTGCATCCCTTGCCGTGGAATGTGCTTATTGATTCGTAT 725
Query 812 GCCAAGAACGAGCTTTTTGAGGAGGT-TATTGCTGCTTACAAGAGAATGGTGAGCAAGGG 870
| | ||| | | ||||| || || || ||| ||||||| ||||| |||| || ||
Sbjct 726 GTTAGGAATAAACGGTTTGAAGA-GTCGGTTTCTGTTTACAAGCGAATGATGAGTAAAGG 784
Query 871 AATCCGACCCGATGCCTTCACTTATCCGTCTGTTCTTAAGGCTTGTGGTGAAACACTTGA 930
||| | ||| |||| |||||||||||||||||||| || |||||||| | | ||| ||
Sbjct 785 AATTCAACCGGATGAATTCACTTATCCGTCTGTTCTCAAAGCTTGTGGAGCATTACTGGA 844
Query 931 CGTTGCCTTTGGAAGGGTGGTTCATGGTTCCATCGAGGTTAGCTCTTACAAGTCCAGCTT 990
|||| | ||| || ||||||||||| || | |||||||||||| ||| || ||||||
Sbjct 845 TTTTGCATATGGGAGAGTGGTTCATGGCTCTGTTGAGGTTAGCTCTCACAGGTGCAGCTT 904
Query 991 GTATGTTTGTAATGCATTGATCTCTATGTATAAAAGGTTTAG-AAATATGGGTATTGCTC 1049
|||||| || ||||| ||||| |||||||||||||| ||| | ||| ||| | ||||||
Sbjct 905 GTATGTCTGCAATGCGTTGATATCTATGTATAAAAGATTTGGTAAA-GTGGATGTTGCTC 963
Query 1050 GGAGGTTGTTTGATC-GAATGTTTGAAAGGGATGCTGTCTCATGGAATGCAGTGATAAAC 1108
||| |||||||| | | |||| |||||||||||||||||||||||||||||| || |||
Sbjct 964 GGAAATTGTTTGA-CAGGATGTCTGAAAGGGATGCTGTCTCATGGAATGCAGTAATTAAC 1022
Query 1109 TGTTATGCTTCGGAAGG-CATGTGGAGTGAAGCGTTTGAGCTTTTCGATAA-AATGTGGT 1166
||| || |||| ||||| | | | ||| |||| ||| ||||||| |||| || || |
Sbjct 1023 TGT-ATACTTCTGAAGGAC-T-TCGAG--AAGCTTTTAAGCTTTTTGATATTAA-GTACT 1076
Query 1167 TTTCAGGTGTTGAGGTC-AGTGTCATAACTTGGAATATTATTT-CTGGAGGTTGTTTGCA 1224
| | ||||| || | | ||| | |||||||||| | ||| ||||||||||||||||
Sbjct 1077 CT-CTGGTGTCGAAG-CGAGTATTGTAACTTGGAACAC-ATTAGCTGGAGGTTGTTTGCA 1133
Query 1225 AACAGGAAATTATGTAGGAGCTTTG 1249
|||||||||| ||||| ||||||
Sbjct 1134 GGCAGGAAATTACGTAGGGGCTTTG 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110271259275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5