BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71500.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476280 jgi|Araly1|476280|fgenesh2_kg.2__1410__AT1G71500.1 1613 0.0
> Ahg476280 jgi|Araly1|476280|fgenesh2_kg.2__1410__AT1G71500.1
Length=1208
Score = 1613 bits (873), Expect = 0.0
Identities = 1121/1232 (91%), Gaps = 51/1232 (4%)
Strand=Plus/Plus
Query 1 GGCTACCATTATTCTTCTTCTTCTTCGTTATCCAC-T-TCTCTCTCCTTTGTGTGGTCAA 58
||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||| ||
Sbjct 1 GGCTACCATCGTTCTTCTTCTTTTTCGTTATCCACTTGTCTCTCTCCTTTGTGTGGTGAA 60
Query 59 ATGCATTTCCCTCCATTCTCTTACGCTTTCTCTCACTCTCGTCAATGGCGACCACCGCAT 118
|||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||
Sbjct 61 ATGCATTTCCCTCCATTCTCTTTCGCTCTCTCTCACACTCGTCCATGGCGACCACCGCAT 120
Query 119 CTTCATCTCTCCCCCGTAATTACTCCTTCACAACTCCGCGACCT--T-CATCATTC-ATC 174
|||| |||||||| || ||||||||||||||| |||| || ||| | |||| ||| |||
Sbjct 121 CTTCGTCTCTCCCTCGAAATTACTCCTTCACACCTCCTCGTCCTCCTCCATC-TTCAATC 179
Query 175 CGAGGACCGCCATTAGCTAGAACGCTGCCTCTCTATCTCCGCCGTAACCGTCGAG-TAGC 233
|| ||| || | | |||||||||| || ||||||||||||||||| || | ||||
Sbjct 180 CGCGGA---CC--T-G---GAACGCTGCCGCTTTATCTCCGCCGTAACCGACG-GTTAGC 229
Query 234 TCTCACTTACCGATTGGACCAGAATTCGAAGCAGAGAA---GTGGTGGAAACGTAAGATG 290
| | |||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 230 TTTAACTTACCGATTGGACCAGAATTCGAAGCGGAGAAGTGGTGGTGGAAACGTAAGATG 289
Query 291 CGAGGCGACGGAGGTATCTTCTTCTTCTTCTGTATCCACACCTGGAAGGAATTGGGTGCC 350
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 290 CGAGGCGACGGAGGTATCTTCTTCTTCGTCTGTATCCACACCTGGAAGGAATTGGGTGCC 349
Query 351 GGTGGTGCCGTTATCGGCGCTTCCGAAAGGTGAACGGCGAGTGGTTATTCAAGACGATGA 410
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 350 GGTTGTGCCGTTATCGGCGCTTCCGAAAGGTGAACGGCGAGTGGTAATTCAAGACGATGA 409
Query 411 GACGATATTGTTGCTTTGGTATAAGAACGATGTTTTTGCAATTGAGAATCGTTCACCAGC 470
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||
Sbjct 410 GACGATATTGTTGCTTTGGTATAAGAACGATGTGTTTGCTATTGAGAATCGTTCTCCTGC 469
Query 471 TGAAGGAGCTTATAGCGAAGGACTTCTCAACGCTAGGCTCACTCAGGATGGTTGCATTGT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TGAAGGAGCTTATAGCGAAGGACTTCTCAACGCTAGGCTCACTCAGGATGGTTGCATTGT 529
Query 531 GTGTCCATCGACGGATAGTACGTTTGATCTTAGAACTGGAGAGATCCGGGAATGGTACCC 590
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GTGCCCATCGACGGATAGTACGTTTGATCTTAGAACTGGAGAGATCCGGGAATGGTACCC 589
Query 591 GAAAAACCCGGTTCTCAGAGTCTTGACACCTGCACTGAGGAAACTATTTGTATACCCTGT 650
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 590 GAAAAACCCGGTTCTCAGAGTCTTGACACCTGCACTGAGGAAACTATTTGTGTACCCTGT 649
Query 651 CAAATATGATGAGGAAAACATCTATATCAGCATTAGAGACAGCGGGAAAACAGAGGCAGC 710
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 650 CAAATATGATGAGGAAAACATCTATATCAGCATTAGAGACAGTGGGAAAACAGAGGCAGC 709
Query 711 TGCTGAGATCGTCTTCAGTGGAAAAGCTCAGCCTGGGCTCACAGCAACAAACGTCAATGT 770
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TGCTGAGATTGTGTTTAGTGGAAAAGCTCAGCCTGGGCTCACAGCAACAAACGTCAATGT 769
Query 771 AGACGAGGTGAGAATGATTGTGGACGAGGGTTCTGAAGGATTTGGTTTCACGAAGAAGAA 830
||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 770 AGATGAGGTGAGAATGATTGTGGACGAGGGGTCTGAAGGATTTGGTTTCACGGTGAAGAA 829
Query 831 CGAAGTGATAAACGGGAAGGCGGCAGTGATAGGATTCTTGCTGCTGTTAGATTTCGAGCT 890
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 830 CGAAGTGATAAATGGGAAGGCGGCAGTGATAGGATTCTTGCTGCTGTTAGATTTTGAGCT 889
Query 891 ATTGACAGGTAAAGGTCTATTGAAAGGAACAGGGTTCTTGGACTTCCTTTACTCTGCTTC 950
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 890 ATTGACAGGTAAAGGTCTATTGAAGGGAACAGGATTCTTGGACTTCCTTTACTCTGCTTC 949
Query 951 AGATGCTTTCAAGTAGAGGTAATATCTTTGTTGGTCTGGTTTTGCTTGCCTCCTTTGTGC 1010
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||
Sbjct 950 AGATGCTTTCAAGTAGAGATAATATCATTGTTGGTCTGCTTTTGCTTGCCTCGTTTGTGC 1009
Query 1011 AGTTTGCCGAGAAACaaaaaaaaa-a-------aa--a---aC-C-ATGTAATAGTATAT 1055
|||||||||||||||||||||||| | || | || | |||| ||||||||
Sbjct 1010 AGTTTGCCGAGAAACAAAAAAAAATACTTCCGGAACTACTCACACCATGTCTTAGTATAT 1069
Query 1056 AGAGATGGCTTTGCTCTGTCTTTCTTTGTGTTT-ACCC-CTTATACGAGATATTCTTTCT 1113
||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 1070 AGAGATGGCTTTGCTCTGTCTTTGTTTGTGTTTTACCCTCTTATACGAGATATTCTTTCT 1129
Query 1114 TCTCCTTGAGTTCAAATTATAATCTTCAAGCTTTCCCACTATCTTTTGTATTTGACATAC 1173
||| | ||| ||||| || ||| || ||| | | | | |||||| || |||||||
Sbjct 1130 TCTTCGTGAATTCAA-TT-TAA-----AACCTT-CT-A-TCTGTTTTGT-TT-GACATAC 1177
Query 1174 AACACCTCATATTTGATTGGGTGAAACAAAAA 1205
||||| || |||| ||||| |||||||||||
Sbjct 1178 AACACTTCG-ATTTCATTGGATGAAACAAAAA 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5