BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G71520.1

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476281 jgi|Araly1|476281|fgenesh2_kg.2__1411__AT1G71520.1         627    3e-179


> Ahg476281 jgi|Araly1|476281|fgenesh2_kg.2__1411__AT1G71520.1
Length=531

 Score =  627 bits (339),  Expect = 3e-179
 Identities = 475/537 (88%), Gaps = 24/537 (4%)
 Strand=Plus/Plus

Query  1    TCTACACGACTTTATTCCGC-TTCAACGTATTTATATGCAACATTTTCC-CTCATGATCT  58
            ||||| ||||||||||| || |||||||||||||||| | ||| ||||| |||| |||| 
Sbjct  1    TCTACCCGACTTTATTCTGCTTTCAACGTATTTATATTCGACA-TTTCCTCTCAAGATCA  59

Query  59   TATAATCTCATCTTCATCCACCCAAAAACATGGATTCAAGAGACACCGGAGAAACTGACC  118
            ||||||||||||||||| |||||||||| ||||| |||||||   ||||||||||||| |
Sbjct  60   TATAATCTCATCTTCATGCACCCAAAAA-ATGGACTCAAGAG---CCGGAGAAACTGATC  115

Query  119  AGAGCAAGTACAAAGGTATCCGTCGTCGGAAATGGGGAAAATGGGTATCAGAGATTCGTG  178
            | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  116  AAAGCAAGTACAAAGGTATCCGTCGTCGAAAATGGGGAAAATGGGTATCAGAGATTCGTG  175

Query  179  TCCCGGGAACTCGTCAACGTCTCTGGTTAGGCTCTTTCTCCACCGCAGAAGGCGCTGCCG  238
            | |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct  176  TTCCGGGAACTCGTCAACGTCTTTGGTTAGGCTCTTTCTCCACCGCCGAAGGCGCTGCCG  235

Query  239  TAGCCCACGACGTCGCTTTTTACTGCTTGCACCGACCATCTTCCCTCGACGACGAATCTT  298
            |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct  236  TAGCCCACGACGTCGCTTTTTACTGCTTGCACCGACTATCTTCCCTCGACGATGAAGCTT  295

Query  299  TTAACTTCCCTCACTTACTTACAACCTCCCTCGCCTCCAATATATCTCCTAAGTCCATCC  358
            ||||||||||||  || ||  ||||||||||||||||||||| |||||||||||| ||||
Sbjct  296  TTAACTTCCCTCGTTTGCTCCCAACCTCCCTCGCCTCCAATACATCTCCTAAGTCAATCC  355

Query  359  AAAAAGCTGCTTCCGACGCCGGCATGGCCGTGGACGCCGGATTC--CATG------G-T-  408
            ||||||| ||||||||||| ||||||||||| |||||||| |||  |||       | | 
Sbjct  356  AAAAAGCAGCTTCCGACGCTGGCATGGCCGTCGACGCCGGTTTCAACATAAACAACGATT  415

Query  409  --GCTGTGTCTGGGAGTGGTGGTTGTGAAGAGAGATCTTCCATGGCG---AATATGGAGG  463
              ||||||||||||||||||||||||||||| |||||||||||||||   |||||||| |
Sbjct  416  CTGCTGTGTCTGGGAGTGGTGGTTGTGAAGATAGATCTTCCATGGCGGCGAATATGGAAG  475

Query  464  AGGAGGACAAACTTAGTATCTCCGTGTATGATTATCTTG-AAGACGATCTCGTTTGA  519
            ||||  |  |||||||||| |||||||| |||||| ||| |||||||||| ||||||
Sbjct  476  AGGACAATGAACTTAGTATTTCCGTGTACGATTAT-TTGGAAGACGATCTTGTTTGA  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21290818662


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5