BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71528.1
Length=3255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476282 jgi|Araly1|476282|fgenesh2_kg.2__1412__AT1G71528.1 2159 0.0
> Ahg476282 jgi|Araly1|476282|fgenesh2_kg.2__1412__AT1G71528.1
Length=2911
Score = 2159 bits (1169), Expect = 0.0
Identities = 1372/1465 (94%), Gaps = 34/1465 (2%)
Strand=Plus/Minus
Query 386 GAGCTGAGCTAGAATCATAGAATGTAGCAAATTTGGA----AT-TTTTTGCTTTCCCTTG 440
||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 2719 GAGCTGAGCCAGAATCATAGAATGTAGCAAATTTGGAGTTTTTGTTTTTGCTTTGCCTTG 2660
Query 441 CAGATACATCTTTGTTTGTTTGACTCAACTCAATAGAGAGACCTTGTGTATATACAAAAG 500
|| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2659 CAAATACATGTTTGTTTGTTTGACTCAACTCAATAGATAGACCTTGTGTATATACAAAAG 2600
Query 501 GTAGCTTGACATTATAGTGTAGTCAATCTTGTTGGCCTAAGAAACAAATTCGACTATACA 560
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 2599 GTAGCTTGACATTATAGTGTGGTCAATCTTGTTGGCCTAAGAAACAAA-TCGACTATACA 2541
Query 561 TTGTATCAATCCCTGGCTTCAAGCACAGAAGAGG--C-ACAACAACAAAAACGCTTATGA 617
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2540 TTGTATCAATCCCTGGCTTCAAGCACAGAAGAGGCACAACAACAACAAAAACGCTTATGA 2481
Query 618 GTTCTATGGC-TTCTTGTTCCCTT-TTTCAGCTACCGAGCATTTCTTCCTGTGTAACGTT 675
|||||||||| || || || || ||| |||||||||||||||||||||||||| ||||
Sbjct 2480 GTTCTATGGCTTTTTTTTTTTTTTCTTTTAGCTACCGAGCATTTCTTCCTGTGTATCGTT 2421
Query 676 GCTGCTGTTGTTGTCCTGTTAAAGCTTGGTTTTTTCTTGATGCAGACTTTTCTACACGTG 735
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 2420 GCTGCTGTTGTTGTCCTGTTAAAGCTTGGTTTTTCCTTGATGCAGACTTTTCCACACGGG 2361
Query 736 CTTTGCGGACAGCTTGTTGGATCTGCTTCTCATGCTCTTTAAGCAAATCTTCAAGATTTC 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2360 ATTTGCGGACAGCTTGTTGGATCTGCTTCTCATGCTCTTTAAGCAAATCTTCAAGATTCC 2301
Query 796 CACCAGGAGGCATCAATGGTCCTGAGTAATTGATTCTGTTTTTCCTTGGTGCATTGCCCT 855
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2300 CACCAGGAGGCATCAATGGTCCTGAGTAATTGATTCTGTTTTTCCTTGGTGCATTGCCC- 2242
Query 856 GATGACACAGCCCAAAGCAAC-T--TAATAATTACATACCAAAAGGTTTAAGGTACACGA 912
|||||||||||||| |||| | ||||||||||||||||| ||| || | |||||| |
Sbjct 2241 --TGACACAGCCCAAAACAACTTAATAATAATTACATACCAAGAGG-TTGACGTACACAA 2185
Query 913 TATAACAAGAGGAGAGACTTACGGTTGAGTAATCTCTGTTGGGATCTCTCCTATAAGATT 972
|||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2184 TATAACAAGAGGAG-G-CTTACGGTTGAGTAATCTCTGTTGGAATCTCTCCTATAAGATT 2127
Query 973 CACCAGACAAGTCTCCTGTTTGAGATGTCCTAGACTTCATCTCTGCATTAGTTTGTCTTT 1032
|||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 2126 CACCAGACAAGTCTCCTGTTTGAGATATTTTAGACTTCAGCTCTGCATTAGTTTGTCTTC 2067
Query 1033 TGATGCTTCCACCTCCGTTCCATTCTGTATCAGCCACTGTTGGGTGAACCATTGAAGAAG 1092
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2066 TGATGCTTCCACCTCTGTTCCATTCTGTATCAGCCACAGTTGGGTGAACCATTGAAGAAG 2007
Query 1093 CATGAGCTTTACCATTCTGCTGGATCCCTCTTCTTGGTGGTTCTATCCTAAACCCGGTGC 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 CATGAGCTTTACCATTCTGCTGGATCCCTCTTCTTGGTGGTTCTATCCTAAACCCGGTGC 1947
Query 1153 CACCTTCCTCGTCTGTTTTGAATTTGTGGCTTATGCATGTGACTTTGGACTGTCCTGCAG 1212
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |
Sbjct 1946 CACCTTCCTCGTCTGTTTTGAACTTATGGCTTATGCATGTGACTTTGGACTGCCCTGCGG 1887
Query 1213 CCATAAACTCTGGTGTCTGGGCTGTTTTAAGATCCTTTGGCCGTCCTCTTGTCACAGTTT 1272
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1886 CCATAAACTCAGGTGTCTGGGCTGTTTTGAGATCCTTTGGCCGTCCTCTTGTCACAGTTT 1827
Query 1273 CTCCCCCTCTTCTCTTGTTACCTTCTGCCCTTAGTCTGCAAACAAAACTTTCATCAGAAA 1332
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1826 CTCCCCCTCTTCTCTTGTTACCTTCTGCCCTTTGTCTGCAAACAAAACTTTCATTAGAAA 1767
Query 1333 ACCCCC--AAGAGAAAGACTAGTGAATGAAGATGTATGTAGCTTTACTTTCTTGCTTCTT 1390
|||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1766 ACCCCCCCAAGAGAAGGACTAGCGAATGAAGATGTATGTAGCTTTACTTTCTTGCTTCTT 1707
Query 1391 CGTTGCGAAGCTTGGCATCAAGTTCCTTGCTTGGTGGATATCTAGGTAAGTTTGATGGAT 1450
||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1706 CGTTGCGAAGCTTAGCATCAAGTTCCTTGCTTGGTGGGTATCTAGGTAAGCTTGATGGAT 1647
Query 1451 TCGCAGGGAGTGGCTCCGTGGTGAAGAACTGAAGAGAAGAAAGATTGAAACTC-ATCATG 1509
| ||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||
Sbjct 1646 TAGCAGGGAGTGGCTCCGTGGTGAAGAACTGAAGAGAAGAAAGTTTTAAAC-CGATCATG 1588
Query 1510 AGAAATGTATCTAATAACTTGTTTAAGAAACATGGATTTCTGGTTAGTATCGATCTATTA 1569
|||| || |||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 1587 AGAA-TGCATCTAATAACTTGTTTAAGAAACATG--TT-------AGTATCGATATATTA 1538
Query 1570 CTTCGCTCCTCAAGGTAGAAGCAGCCGATCCCCGTTTTTCAGGTTCTATTGCCAGTAGCT 1629
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1537 CTTCGCTCCTCAAGGTAGAAGCAGCGGATCCCCGTTTTTCAGGTTCTATTGCCAGTAGCT 1478
Query 1630 TATTGATGAGCATCAGAGCTGATGAAGGGAAATGGTTAAAGGTTTCAGCAAGAACAGGCT 1689
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1477 TATTGATGAGCATCAGAGCTGATGGTGGGAAGTGGTTAAAGGTTTCAGCAAGAACAGGCT 1418
Query 1690 TGTAAGGATGACTGGGTTTAAAGCTTGTTGCTAGTGGCAGTGTTGCTCTTCTCCAGTAAT 1749
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 TGTAAGGATGACTCGGTTTAAAGCTTGTTGCTAGTGGCAGTGTTGCTCTTCTCCAGTAAT 1358
Query 1750 CTTCCGAGGGTGAACCACAGAGCTTAAAGATCTTGTGCATCTGCTCCACCTGATAAACAA 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 1357 CTTCCGAGGGTGAACCACAGAGCTTAAAGATCTTGTGCATCTGCTCCACCTGAGAAGCCA 1298
Query 1810 AAAAGGATAATTATCTCATCAGCTG 1834
|||||||||||||||||| ||||||
Sbjct 1297 AAAAGGATAATTATCTCAGCAGCTG 1273
Score = 1698 bits (919), Expect = 0.0
Identities = 1054/1119 (94%), Gaps = 9/1119 (1%)
Strand=Plus/Minus
Query 1945 CATTACTTCTGTGCGTCCTGGCATAATAGGTTTTCCGGCGAAGAGCTCAGTGAGAATGCA 2004
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1272 CATTACTTCTGTACGTCCTGGCATAATAGGCTTTCCGGCGAAGAGCTCAGTGAGAATGCA 1213
Query 2005 GCCGGCGCTCCACAGGTCAATGGCTGGTCCATACTCAGTGGCACCGAGCAACAGCTCAGG 2064
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 GCCGGCGCTCCACAGGTCTATGGCTGGTCCATACTCAGTGGCACCGAGCAACAGCTCAGG 1153
Query 2065 TGCTCTGTACCATAAGGTCACAACACGACTGGTCAGCTGCAGATCTCCATCACCTCGGTA 2124
|||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct 1152 TGCTCTGTACCATAAGGTTACAACACGACTGGTCAGCTGCAGATCTTGATCACCCCGGTA 1093
Query 2125 AAAATTCGCCAATCCGAAATCACCAATCTTCAAGACACCTTCATTATTGATTAAGAGATT 2184
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1092 AAAATTCGCCAATCCAAAATCACCAATCTTCAAGACACCTTCATTATTGATCAAGAGATT 1033
Query 2185 TGAGCCTTTAATATCACGGTGAAGAATTCCTCGTCTGTGGCAATGTTCAAGCCCACGGAA 2244
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TGATCCTTTAATATCACGATGGAGAATTCCTCGTCTGTGGCAATGTTCAAGCCCACGGAA 973
Query 2245 CAATTGCTGCATATAGCACTTGATCTGAAAACGAAGTAGGACTCTTTATAAAACTTGAAT 2304
|||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 972 CAATTGCTGCATATAGCACTTGATCTGAAAACGAAGTAAGACTCTTT-TCTAACTTGAAT 914
Query 2305 -TCTCCAATCTTTCAA-GTGCATAGGAAAACAGAAT-ATGTAATACCTGAGGTTCAGAGA 2361
| ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 913 AT-TCCAATCTTTCAAAGTGTATAGGAAAACAGAATTATGTAATACCTGAGGTTCAGAGA 855
Query 2362 ATTTGATTCCAGGAGTTGCAGCTAGACCTGCGAGATCGTGTTCCATGTACTCAAAGACAA 2421
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 854 ATTTGATTCCAGGAGTTGCGGCTAGACCTGCGAGATCATGTTCCATGTACTCAAAGACAA 795
Query 2422 GGTAGAGGCTACCTGAGAGTCTAGAGGTAACTAGACCTTCTAGCTTCATAACATTGGGGT 2481
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 794 GGTAGAGGCTACCTGAGAGTCTAGAGGTGACTAGACCTTCTAGCTTCATAACATTGGGGT 735
Query 2482 GATCAAGCTTACGAAGAATGAGAATCTCCCTGGCCATAAACCGAACACTCTCTGGATCCA 2541
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 734 GATCAAGCTTACGAAGAATGAGAATCTCCCTGGCCATAAACCGGACACTCTCTGGATCCA 675
Query 2542 TGTTCACAAACCGAACTTTCTTCATCGCCACAATCTTCCCCGTTTCAAGGTCTCTAGCTT 2601
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 674 TGTTCACAAACCGAACTTTCTTCATCGCCACAATCTTTCCCGTTTCAAGGTCTCTAGCTT 615
Query 2602 TGTACACGCTGCTGACTCTGCGCAGCGAGGAACCCATCCTTTAATGGCCTCCCCAGCAAC 2661
|||| |||||||||||||||||||||||||||||||||||||||| || || || |||||
Sbjct 614 TGTATACGCTGCTGACTCTGCGCAGCGAGGAACCCATCCTTTAATTGCTTCTCCGGCAAC 555
Query 2662 AGAAGCCAGCCAAGACGGCCATTCTGCAGCAGG-GAGTTCCGTTTTATTGCTGATCACAC 2720
|||||||| |||||||||||||||||| || || |||||| ||||||||| | |||||||
Sbjct 554 AGAAGCCAACCAAGACGGCCATTCTGC-GCCGGTGAGTTCGGTTTTATTGTTCATCACAC 496
Query 2721 GTGCTGGCTGCTGCTGTGCCGGCTGTGCAACCGGTATAGCGGTGACTCTTCTTGTTGGAT 2780
|| ||| ||||||||| | ||||| |||||||||||||| || |||||||| || || |
Sbjct 495 GTCCTGTCTGCTGCTGCGATGGCTGCGCAACCGGTATAGCCGTAACTCTTCTGGTGGGGT 436
Query 2781 TTCTGGTCGGAGCTCCCACAACAACGACCGGTTTGGTGCTGTTTCGATCAGATGAAGTGG 2840
| || |||||||||||||||| ||| |||||||| |||||||||||||| ||||| ||||
Sbjct 435 TCCTAGTCGGAGCTCCCACAATAACCACCGGTTTAGTGCTGTTTCGATCGGATGACGTGG 376
Query 2841 AAGGACGGCGTGCCACAGGATAACCATTAGCCACAATGGTGATAGAAGCTGAAGAAGTCG 2900
| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 375 AGGGACGGCGCGCCACAGGATAACCATTAGCCACAATGGTGATGGAAGCCGAAGAAGTCG 316
Query 2901 TACGTGTGAAAGATCCTTCCTTCTTGGATGAAGACGAAGACGACGGGGGATGATGAGGGA 2960
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 315 TACGTGTGAAAGATCCTTCCTTTTTGGATGAAGACGAAGACGACGGAGGATGATGAGGGA 256
Query 2961 -GAAGTTGAAGGATGGATTTGCTGGAATCTAATAGATCTTTATCGGTAACGGCGGCGCTT 3019
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 255 TGA-GTTGAAGGATGGATTTGCTGGAATCTAATAGGTCTTTATCGGTAACGGCGGCGCTT 197
Query 3020 GGTGAACGGGCGGTGGCACAAATACAACCCATTACAAAA 3058
|||||||||||||||||||||||||||||||||||||||
Sbjct 196 GGTGAACGGGCGGTGGCACAAATACAACCCATTACAAAA 158
Score = 182 bits (98), Expect = 2e-44
Identities = 143/162 (88%), Gaps = 13/162 (8%)
Strand=Plus/Minus
Query 3095 ACTTTAGTTTTTGCCGATTTGCTTTTATCTATCTATCTCTCATTCTCTCTACTAT-GTCT 3153
|||| || ||||||||| || || | | ||||| | ||| | |||||||||| | || |
Sbjct 150 ACTTAAG-TTTTGCCGA-TT--TTCT-T-TATCT-T-TCT-A-TCTCTCTACTCTGGTGT 101
Query 3154 TAGGTGATATGGTCGGCGACCAAAAACTTTCATTTTTTGTTGTCTCTCTCACGTTTTTGT 3213
| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 100 T-GGTGATATGGTCGGCGACCAAAATCTTTCA-TTTTTGTTGTCTCTCTCACGTTTTTGT 43
Query 3214 GAGTTTGTTGTCATAGAAAAGTGGAACGTGCGTACCACTCAA 3255
|||||||||||||||||||| |||||||||||||||||||||
Sbjct 42 GAGTTTGTTGTCATAGAAAACTGGAACGTGCGTACCACTCAA 1
Score = 104 bits (56), Expect = 4e-21
Identities = 93/109 (85%), Gaps = 10/109 (9%)
Strand=Plus/Minus
Query 236 GTTTATGCAAAAAAGTTTGCTAATTTCTCAAGAATTCAGCCttttttttCCTCGTGAGTT 295
|||||||| ||||||||| |||||||||||||||||||| | ||||||| | | ||
Sbjct 2825 GTTTATGC-AAAAAGTTTTCTAATTTCTCAAGAATTCAG-C-TTTTTTT--T--T---TT 2776
Query 296 TTTTGCTCAGTAGCTTTAGCTTGATATGTGGAATTGTTGCAGAGGTTAT 344
|||||||||||||||||||||||||| || ||| | |||||||| ||||
Sbjct 2775 TTTTGCTCAGTAGCTTTAGCTTGATACGTAGAACTATTGCAGAGATTAT 2727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122849845644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5