BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71680.1
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476285 jgi|Araly1|476285|fgenesh2_kg.2__1415__AT1G71680.1 2503 0.0
> Ahg476285 jgi|Araly1|476285|fgenesh2_kg.2__1415__AT1G71680.1
Length=1846
Score = 2503 bits (1355), Expect = 0.0
Identities = 1628/1755 (93%), Gaps = 37/1755 (2%)
Strand=Plus/Plus
Query 1 CTCTATACATATTGTATCAAAA-AATAAATACATTTTCCTGTA-TTTT-A-ttttttttG 56
||||||||||||||||| |||| || ||||||| ||||||||| |||| | |||||||||
Sbjct 1 CTCTATACATATTGTATTAAAAGAA-AAATACACTTTCCTGTATTTTTAATTTTTTTTTG 59
Query 57 TGAGTATTAAAGAAAACACAAGACAAGAATGACATACACAGCGAATGACGAGGAGAACAA 116
||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||
Sbjct 60 TGAGTATTAAAGAAAACACAAGACAAGAATGACATACCCAGCGGATGATGAGGAGAACAA 119
Query 117 AGGAAGATCAACGGACAATAACAATCACCGTCAAATGGATTACAACGATTGGTTACCAGT 176
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGGAAGATCAACAGACAATAACAATCACCGTCAAATGGATTACAACGATTGGTTACCAGT 179
Query 177 CACAGCGTCTAGAGAAGCCAAATGGTATTACTCCGCCTTCCACAATGTCACGGCCATGGT 236
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 CACAGCGTCTAGAGAGGCCAAATGGTATTACTCCGCCTTCCATAATGTCACGGCCATGGT 239
Query 237 TGGCGCCGGAGTTCTTGGTCTCCCTTTCGCCATGTCACAACTTGGCTGGGGACCTGGACT 296
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 TGGTGCCGGAGTTCTTGGTCTCCCTTTCGCAATGTCACAACTTGGCTGGGGACCTGGACT 299
Query 297 TGTTGCTATAATAATGTCATGGGCTATAACGTTCTACTCGTTATGGCAAATGGTACAGTT 356
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 TGTTGCGATAATAATGTCATGGGCTATAACGTTCTACTCGTTATGGCAAATGGTGGAGTT 359
Query 357 GCACGAAGCCGTTCCAGGGAAACGGTTGGACCGTTACCCCGAGCTAGGGCAAGAAGCTTT 416
||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 360 GCATGAAGCCGTTCCCGGGAAACGGTTGGACCGTTACCCCGAGCTAGGCCAAGAAGCGTT 419
Query 417 TGGACCAAAACTAGGTTACTGGATCGTCATGCCGCAACAGCTTCTTGTCCAAATCGCTTC 476
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 420 CGGACCAAAACTAGGTTACTGGATCGTCATGCCGCAACAGCTTATGGTCCAAATCGCTTC 479
Query 477 CGACATAGTCTACAACGTGACAGGAGGAAAATCTCTCAAGAAATTTGTCGAGCTTCTATT 536
||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| ||
Sbjct 480 CGACATAGTCTACAACGTGACAGGAGGCAAATCGCTTAAGAAATTCGTCGAGCTTCTCTT 539
Query 537 TCCGAATCTCGAACATATCCGTCAGACTTATTACATCCTTGGATTCGCCGCGCTTCAGCT 596
||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct 540 TCCGAATCTCGAACATATCCGTCAGACTTATTACATCCTCGGGTTCGCGGCGCTCCAGCT 599
Query 597 TGTCCTCTCTCAATCTCCTGATTTCAACTCCATCAAGATCGTCTCTCTCCTCGCCGCCCT 656
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 600 TGTCCTCTCTCAGTCTCCTGATTTCAACTCGATCAAAATCGTCTCTCTCCTCGCCGCCCT 659
Query 657 CATGTCTTTCCTTTACTCAATGATAGCTTCGGTGGCGTCAATAGCAAAAGGAACGGAACA 716
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||| | ||
Sbjct 660 CATGTCTTTCCTTTACTCAATGATAGCTTCCGTAGCGTCAATAGCGAAAGGAACGCATCA 719
Query 717 CCGTCCTTCAACTTACGGAGTCAGGGGAGACACGGTGGCCTCAATGGTCTTTGATGCATT 776
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 CCGTCCTTCAACTTATGGAGTCAGGGGAGACACAGTGGCCTCAATGGTCTTTGATGCATT 779
Query 777 TAACGGCATTGGAACCATAGCGTTTGCGTTTGCAGGACACAGTGTGGTTCTTGAGATCCA 836
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 TAACGGCATTGGAACCATAGCGTTTGCGTTTGCAGGACATAGTGTGGTTCTTGAGATCCA 839
Query 837 AGCAACTATTCCTTCAACACCTGAAGTGCCTTCCAAGAAACCAATGTGGAAAGGAGTTGT 896
||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 840 AGCTACTATTCCTTCAACACCTGAAGTTCCTTCCAAGAAACCGATGTGGAAAGGAGTTGT 899
Query 897 TGTAGCTTACATAATCGTCATCATTTGTTACCTTTTTGTGGCTATCTCCGGCTATTGGGC 956
||||||||| ||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 900 CGTAGCTTACCTAATCGTCATCGTTTGTTACCTTTTTGTGGCTATCTCCGGTTTTTGGGC 959
Query 957 GTTTGGGGCTCATGTTGAGGATGATGTTCTCATTTCCTTAGAGAGACCAGCTTGGCTTAT 1016
||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTTTGGTGATCTTGTTGAGGATGATGTTCTCATTTCCTTAGAGAGACCAGCTTGGCTTAT 1019
Query 1017 AGCGGCTGCTAACTTCATGGTTTTTATCCATGTCATAGGAAGTTATCAGGTTTTTGCGAT 1076
||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 AGCTGCTGCTAATTTCATGGTTTTTATCCATGTCATTGGAAGTTATCAGGTTTTTGCGAT 1079
Query 1077 GATTGTGTTTGACACGATCGAGTCTTATCTTGTGAAAACACTGAAATTCACTCCTTCAAC 1136
||| || |||||||| |||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 1080 GATCGTTTTTGACACAATCGAGTCGTATCTTGTGAAAACACTAAAATTCGCTCCTTCAAC 1139
Query 1137 AACACTGCGTCTAGTCGCACGTAGTACATATGTTGCATTGATTTGTCTTGTAGCAGTTTG 1196
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1140 AACACTGCGTCTAGTCGCACGTAGTACATATGTTGCATTGATATGTCTTGTAGCAGTTTG 1199
Query 1197 TATCCCCTTTTTCGGAGGTCTTTTAGGGTTCTTCGGCGGTCTTGTCTTCTCATCAACCTC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TATCCCCTTTTTCGGAGGTCTTTTAGGGTTCTTCGGCGGTCTTGTCTTCTCATCAACCTC 1259
Query 1257 GTACTTCTTGCCTTGCATTATATGGTTGATAATGAAGCGACCAAAAAGATTTAGCGCCCA 1316
||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||
Sbjct 1260 GTACTTCTTGCCTTGCATTATATGGATGATCATGAAGCGACCAAAAAGATATAGCGTCCA 1319
Query 1317 TTGGTGGTGTTCTTGGGTA---------GCAATAGTCACTGGTATCTCGATAGCGATTCT 1367
|||||||||||||| || |||||||||||||| |||| |||||| |||||
Sbjct 1320 TTGGTGGTGTTCTTTCTTAATTCAAATAGCAATAGTCACTGGAATCTTGATAGCAATTCT 1379
Query 1368 TGCGCCCATTGGAGGAATGAGACACATTATTCTTTCAGCAAGAACCTACAAGCTCTTCTC 1427
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1380 TGCGCCCATTGGAGGAATGAGACACATTATTCTTTCAGCAAGAACTTACAAGCTCTTCTC 1439
Query 1428 ATAGGCTTCAAATAAAAAGCCTTGCAACCAAACA-T--CACAACAAACTTATAAAAGttt 1484
|||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1440 ATAGGCTTTAAATAAAAAGCCTTGCAACCAAACAATATCACAACAAACTTATAAAAGTTT 1499
Query 1485 tttaccttttttAACTTAAGTTAGCCTTCTAGTTGGGGAATATATAAAGTTAGTTATTTG 1544
|| || || || | |||||| ||||||||| ||||||||| ||||||||||| |
Sbjct 1500 TTAAC-TT----AA---A--TTAGCCGTCTAGTTGGAGAATATATATAGTTAGTTATTCG 1549
Query 1545 ATTATTTGGATTCTCCTTT-CTTTTTATAACCCTTTCATCAAGAACTGCCTTCGGAATTG 1603
||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1550 ATTATTTGGCTTCTCGTTTTCTTTTTATAACCCGTTCATCAAGAACTGCCTTCCGAATTG 1609
Query 1604 TTGTTAAGGCTTTACGCGCTTGGC-TTGAGGCTGTGACGGATGATGTTCTCTCAAAAACT 1662
||| ||||||||||||||||||| || |||||| ||| ||||||||||||||||| |||
Sbjct 1610 CTGTGAAGGCTTTACGCGCTTGGCCTT-AGGCTGCGACTGATGATGTTCTCTCAAACACT 1668
Query 1663 TCATG-ACaaa--a---aaaaaGGAATACCATACAATATGTGGTCAACCTCAGGCTCTGA 1716
||||| | ||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1669 TCATGTA-AAATCACCTAAAAAGGAATACCATACAATATGTGGTCAACCTCAGGCTCTAA 1727
Query 1717 ACTTTCAGGtttttt 1731
|||| ||||||||||
Sbjct 1728 ACTTGCAGGTTTTTT 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70924036190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5