BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71690.1
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316133 jgi|Araly1|316133|fgenesh1_pm.C_scaffold_2001166 1225 0.0
> Ahg316133 jgi|Araly1|316133|fgenesh1_pm.C_scaffold_2001166
Length=894
Score = 1225 bits (663), Expect = 0.0
Identities = 824/900 (92%), Gaps = 18/900 (2%)
Strand=Plus/Plus
Query 42 ATGACGACTTATCTCCCATTTCCGATGACCACGAGACTCATACTCTCTAGCTTCGTCTCT 101
||||||||| |||||||||||||||||||| | | ||||||||||||||||||||| |||
Sbjct 1 ATGACGACTAATCTCCCATTTCCGATGACCCCCAAACTCATACTCTCTAGCTTCGTGTCT 60
Query 102 CTCGTCGTACTCACTCTCTTCTTCATCACCAGAACCGGTTTCTCACCGTCATCTTC-AT- 159
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 61 CTCGTCGTAATCACTCTCTTCTTCATCACCAGAACCGGTTTCTCACCGTCTTCTTCAATA 120
Query 160 TTCATCAGCCTCTGAACAACACTCTCCGGATCTCCACTTCCTCCACCGGCAGTAAATTAC 219
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 121 TT--TCAGCCTCTGAACAACACTCTCCGGATCTCCACTTCCTCCACCGGAAGTAAGTTAC 178
Query 220 AGAG-TC-----CAAGAAGTTGTAATAAGATCCCTCCTTCCCTCGCCGATGCTCTCGTCC 273
|||| || | | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 179 AGAGCTCAAAATCCACAAGTTGTAATAAGATCCCTCCTTCGCTCGCCGATGCTCTCGTCC 238
Query 274 ACTATGCCTCCTCCAATGTCACTCCCCAGCAAACTCTCTCCGAAATCTCCGTCACCAAGA 333
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 239 ACTATGCCGCCTCCAATGTCACTCCCCAGCAAACACTCTCCGAAATCTCCGTCACCAAGA 298
Query 334 AGGAATTAGAGAAGAAATCTCCGTGCAACTTCTTGGTATTTGGTCTTGGTCACGATAGCT 393
||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 299 AGGTTTTAGAGAAGAAATCTCCGTGCAACTTCCTGGTATTTGGTCTTGGTCGCGATAGCT 358
Query 394 TGATGTGGGCGACGTTAAATCACGGAGGAAGAACCATCTTCTTAGACGAGGACGAGTCAT 453
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 359 TGATGTGGGCGGCGCTAAATCACGGAGGAAGAACCATCTTCTTAGAAGAGGACGAGTTAT 418
Query 454 GGATTCACCAAATCGCTGAGAAATTCCCGTCTCTTGAATCGTACCACGTCCGGTACAAGA 513
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 419 GGATTCACAAAATCGCTGAGAAATTCCCGTCTCTGGAATCGTACCACGTCCGGTACAATA 478
Query 514 CCAAGGTAAGAGACGCGGAA--GCTCTCATGGCTGCTACGAAAGACAGAGAAGAATGCCG 571
|||||||||||||||| || ||||||||||| || |||| |||||| ||||| |||||
Sbjct 479 CCAAGGTAAGAGACGC--AACGGCTCTCATGGCAGCGACGAGAGACAGGGAAGAGTGCCG 536
Query 572 CCGCGTGTCAACTGATCTTAGGGTTTCCACTTGCGAGCTTGCGTTGAAGGGCTTACCGGA 631
|||||||||||||||||| | || || | |||||||||||||||||||||||||| ||
Sbjct 537 TCGCGTGTCAACTGATCTTCGTGTGTCTGCGTGCGAGCTTGCGTTGAAGGGCTTACCAGA 596
Query 632 GGTGGTTTACGAGACAGAGTGGGATCTAATCATGGTGGATGCTCCGACGGGGTTTCATGA 691
|||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct 597 GGTGGTTTACGAAACAGAGTGGGATTTAATCATGGTGGATGCTCCCACGGGGTTTGATGA 656
Query 692 AGAAGCTCC-GGGACGGATGTCGGCGATTTACACGGCGGGGATGATCGCGAGGAGACGGA 750
||| |||| ||| |||||| | |||||||| || |||||||||||||||||||| ||||
Sbjct 657 CGAAACTCCAGGG-CGGATGACAGCGATTTATACAGCGGGGATGATCGCGAGGAGGCGGA 715
Query 751 AGGATGA-GGAAGAGACAACGGCTGTGTTTGTGCATGATGTGGATAGGAAAGTGGAGGAT 809
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGGATGATGG-AGAGACAACGGCTGTGTTTGTGCATGATGTGGATAGGAAAGTGGAGGAT 774
Query 810 GAGTTCTCAATGGAGTTTTTGTGTAGAGATTACATGACGAAGCAAGAGGGAAGACTCCGT 869
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 775 GAGTTCTCAATGGAGTTTTTGTGTAGAGATTACATGACGGAGCAAGAAGGAAGACTCCGT 834
Query 870 CATTTCACGGTGCCTAGTCACCGTAACTATGGTGTCTCCGGCGTTAAATTCTGTCCTTAA 929
||||||||||||||||| ||||| ||| ||||| ||||||||| |||||| ||||| |||
Sbjct 835 CATTTCACGGTGCCTAGCCACCGGAACCATGGTTTCTCCGGCGCTAAATTATGTCCCTAA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38427900336
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5