BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71691.2
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476288 jgi|Araly1|476288|fgenesh2_kg.2__1418__AT1G71691.2 2021 0.0
> Ahg476288 jgi|Araly1|476288|fgenesh2_kg.2__1418__AT1G71691.2
Length=1321
Score = 2021 bits (1094), Expect = 0.0
Identities = 1236/1305 (95%), Gaps = 8/1305 (1%)
Strand=Plus/Plus
Query 60 ACTTCATAATGGCTTTCCACTTCCGGCGACTTTGCTTCTTCTCAGCTCTTCTTGCCGTGG 119
|||||| ||||||||||||||||| | |||||| |||||||||||||||||| | ||||
Sbjct 1 ACTTCACAATGGCTTTCCACTTCCCGAGACTTTACTTCTTCTCAGCTCTTCTCGTGGTGG 60
Query 120 TTCTCCAACTCCTTCATGGCGTCTCTGGCCAACTAGTTGTGGTTGAGGAACCTATTTCTG 179
|||| || ||| ||||||| ||||| ||||||||||||| |||||| |||||||||||||
Sbjct 61 TTCTTCATCTCGTTCATGGTGTCTCCGGCCAACTAGTTGAGGTTGAAGAACCTATTTCTG 120
Query 180 CTCCTCCGCCTCCGCTGGTCGACCTAAACACCGGTGATGGCATTGTGCCGGCGCTGTTTG 239
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CTCCTCCGCCTCCATTGGTCGACCTAAACAGCGGTGATGGCATTGTGCCGGCGCTGTTTG 180
Query 240 TCTTCGGTGACTCTCTAATAGACAATGGGAATAACAATAACATTCCTTCCTTTGCCAAAG 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTTCGGTGACTCTCTGATAGACAATGGGAATAACAATAACATTCCTTCCTTTGCCAAAG 240
Query 300 CCAATTATTTTCCTTATGGCATTGATTTCAATGGCGGTCCGACCGGTCGATTCTGCAATG 359
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 241 CCAATTATTTCCCTTATGGTATAGATTTCAATGGCGGTCCGACCGGTCGGTTCTGCAATG 300
Query 360 GCTTAACGATGGTCGATGGGATTGCTCAACTATTGGGGCTGCCACTGATTCCGGCCTACT 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GCTTAACCATGGTCGATGGGATTGCTCAACTATTGGGGCTGCCACTGATTCCGGCGTACT 360
Query 420 CGGAAGCTACCGGAGATCAAGTACTTCGTGGTGTCAACTATGCTTCCGCAGCCGCGGGGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 CGGAAGCTACCGGAGATCAAGTACTTCGTGGTGTCAACTATGCTTCCGCAGCCGCCGGGA 420
Query 480 TTCTTCCTGACACCGGAGGAAACTTTGTGGGACGCATACCTTTCGACCAGCAGATTCATA 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 TTCTTCCTGACACCGGAGGAAACTTTGTGGGACGCATACCTTTCGACCAACAGATTCATA 480
Query 540 ACTTCGAGACAACACTAGATCAGGTGGCGAGCAAGTCCGGTGGTGCAGTGGCCATTGCGG 599
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 481 ACTTCGAGACAACGTTAGATCAGGTGGCTAGCAAGTCCGGTGGTGCAGTGGCCATTGCAG 540
Query 600 ATTCGGTGACTCGAAGCTTGTTCTTCATCGGAATGGGAAGCAACGACTATCTCAACAATT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTCGGTGACTCGAAGCTTGTTCTTCATCGGAATGGGAAGCAACGACTATCTCAACAATT 600
Query 660 ACTTGATGCCCAATTTCCCTACCCGTAACCAATACAACTCCCAACAGTTCGGTGATCTCT 719
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 601 ACTTGATGCCCAATTTCCCTACCCGTAACCAATACAACTCCCAACAATTCGGCGATCTCT 660
Query 720 TGGTTCAACATTACACCGATCAGCTCACCAGACTATATAATCTTGGTGGTCGGAAATTTG 779
| ||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 661 TAGTTCAACATTACACCAATCAGCTCACCAGACTCTATAATCTCGGTGGTCGGAAATTTG 720
Query 780 TAGTGGCCGGACTTGGAAGAATGGGGTGCATTCCCAGCATTCTAGCTCAAGGAAACGACG 839
||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||
Sbjct 721 TAGTGGCCGGACTTGGAAGAATGGGATGCATTCCTAGTATTTTAGCTCAAGGAAACGACG 780
Query 840 GTAAATGCTCGGAAGAAGTGAACCAACTTGTTCTTCCTTTCAACACAAACGTTAAAACAA 899
|||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 781 GTAAATGCTCTGAAGAAGTTAACCAACTTGTTCTTCCTTTCAACACAAACGTAAAAACAA 840
Query 900 TGATCTCTAATCTCAACCAGAATCTCCCGGATGCTAAATTTATTTACCTCGACATCGCTC 959
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 TGATCTCTAATCTCAACCAGAATCTCCCGGCTGCTAAATTTATTTACCTCGACATCGCTC 900
Query 960 ATATGTTCGAAGACATCGTTGCTAACCAAGCAGCTTATGGTCTTACTACTATGGACAAAG 1019
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 901 ATATGTTCGAAGACATCGTTGCGAACCAAGCAGCTTATGGGCTTACTACTATGGACAAAG 960
Query 1020 GATGTTGTGGAATAGGAAAAAACAGAGGACAGATCACTTGTCTTCCCTTTGAAACGCCTT 1079
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GATGTTGCGGGATAGGAAAGAACAGAGGACAGATCACTTGTCTTCCCTTTGAAACGCCTT 1020
Query 1080 GTCCTAACAGAGATCAGTATGTGTTTTGGGATGC-TTTCCATCCTACAGAGAAAGTTAAT 1138
||||||||||||| ||||||||||||||||| || |||| ||||||| ||||||||||||
Sbjct 1021 GTCCTAACAGAGACCAGTATGTGTTTTGGGACGCGTTTC-ATCCTACCGAGAAAGTTAAT 1079
Query 1139 CTCATAATGGCAAAGAAAGCGTTTGCTGGTGACCGCACTGTCGCGTACCCGATCAACATT 1198
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1080 CTCATAATGGCAAAGAAAGCGTTTGCTGGTGACCGCACTGTCGCGTATCCAATCAACATT 1139
Query 1199 CAGCAATTGGCTAGTCTCAATTAACGATTATGAA-GACTATCAACAAGACAT-AAAAA-C 1255
||| |||||||||||||||||||||||||||||| |||||||||| ||| || ||||| |
Sbjct 1140 CAGGAATTGGCTAGTCTCAATTAACGATTATGAAAGACTATCAACTAGAAATTAAAAAAC 1199
Query 1256 TTGGTGTTGTCTTTGTAGTTTCTTTTTTGTAAGGTTTTGAGTCAAATCTGTTTTCCTTTT 1315
||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct 1200 TTGGTGTTGTCTTTGTAGTTTCTGTTT-GTAAGATTTTGAGTCAAATCTGTTTTCCTTTT 1258
Query 1316 AAGACGTTTTGAAAACGTCTACTGTGTCACACTTAACGGTCCAAA 1360
||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1259 GAGACGTTTTGAAAACGTCTACTGTGTCAC-CA-AACGGTCCAAA 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53021621040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5