BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71691.2 Length=1418 Score E Sequences producing significant alignments: (Bits) Value Ahg476288 jgi|Araly1|476288|fgenesh2_kg.2__1418__AT1G71691.2 2021 0.0 > Ahg476288 jgi|Araly1|476288|fgenesh2_kg.2__1418__AT1G71691.2 Length=1321 Score = 2021 bits (1094), Expect = 0.0 Identities = 1236/1305 (95%), Gaps = 8/1305 (1%) Strand=Plus/Plus Query 60 ACTTCATAATGGCTTTCCACTTCCGGCGACTTTGCTTCTTCTCAGCTCTTCTTGCCGTGG 119 |||||| ||||||||||||||||| | |||||| |||||||||||||||||| | |||| Sbjct 1 ACTTCACAATGGCTTTCCACTTCCCGAGACTTTACTTCTTCTCAGCTCTTCTCGTGGTGG 60 Query 120 TTCTCCAACTCCTTCATGGCGTCTCTGGCCAACTAGTTGTGGTTGAGGAACCTATTTCTG 179 |||| || ||| ||||||| ||||| ||||||||||||| |||||| ||||||||||||| Sbjct 61 TTCTTCATCTCGTTCATGGTGTCTCCGGCCAACTAGTTGAGGTTGAAGAACCTATTTCTG 120 Query 180 CTCCTCCGCCTCCGCTGGTCGACCTAAACACCGGTGATGGCATTGTGCCGGCGCTGTTTG 239 ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 121 CTCCTCCGCCTCCATTGGTCGACCTAAACAGCGGTGATGGCATTGTGCCGGCGCTGTTTG 180 Query 240 TCTTCGGTGACTCTCTAATAGACAATGGGAATAACAATAACATTCCTTCCTTTGCCAAAG 299 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTTCGGTGACTCTCTGATAGACAATGGGAATAACAATAACATTCCTTCCTTTGCCAAAG 240 Query 300 CCAATTATTTTCCTTATGGCATTGATTTCAATGGCGGTCCGACCGGTCGATTCTGCAATG 359 |||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||| Sbjct 241 CCAATTATTTCCCTTATGGTATAGATTTCAATGGCGGTCCGACCGGTCGGTTCTGCAATG 300 Query 360 GCTTAACGATGGTCGATGGGATTGCTCAACTATTGGGGCTGCCACTGATTCCGGCCTACT 419 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 301 GCTTAACCATGGTCGATGGGATTGCTCAACTATTGGGGCTGCCACTGATTCCGGCGTACT 360 Query 420 CGGAAGCTACCGGAGATCAAGTACTTCGTGGTGTCAACTATGCTTCCGCAGCCGCGGGGA 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 361 CGGAAGCTACCGGAGATCAAGTACTTCGTGGTGTCAACTATGCTTCCGCAGCCGCCGGGA 420 Query 480 TTCTTCCTGACACCGGAGGAAACTTTGTGGGACGCATACCTTTCGACCAGCAGATTCATA 539 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 TTCTTCCTGACACCGGAGGAAACTTTGTGGGACGCATACCTTTCGACCAACAGATTCATA 480 Query 540 ACTTCGAGACAACACTAGATCAGGTGGCGAGCAAGTCCGGTGGTGCAGTGGCCATTGCGG 599 ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 481 ACTTCGAGACAACGTTAGATCAGGTGGCTAGCAAGTCCGGTGGTGCAGTGGCCATTGCAG 540 Query 600 ATTCGGTGACTCGAAGCTTGTTCTTCATCGGAATGGGAAGCAACGACTATCTCAACAATT 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ATTCGGTGACTCGAAGCTTGTTCTTCATCGGAATGGGAAGCAACGACTATCTCAACAATT 600 Query 660 ACTTGATGCCCAATTTCCCTACCCGTAACCAATACAACTCCCAACAGTTCGGTGATCTCT 719 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 601 ACTTGATGCCCAATTTCCCTACCCGTAACCAATACAACTCCCAACAATTCGGCGATCTCT 660 Query 720 TGGTTCAACATTACACCGATCAGCTCACCAGACTATATAATCTTGGTGGTCGGAAATTTG 779 | ||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||| Sbjct 661 TAGTTCAACATTACACCAATCAGCTCACCAGACTCTATAATCTCGGTGGTCGGAAATTTG 720 Query 780 TAGTGGCCGGACTTGGAAGAATGGGGTGCATTCCCAGCATTCTAGCTCAAGGAAACGACG 839 ||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||||| Sbjct 721 TAGTGGCCGGACTTGGAAGAATGGGATGCATTCCTAGTATTTTAGCTCAAGGAAACGACG 780 Query 840 GTAAATGCTCGGAAGAAGTGAACCAACTTGTTCTTCCTTTCAACACAAACGTTAAAACAA 899 |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 781 GTAAATGCTCTGAAGAAGTTAACCAACTTGTTCTTCCTTTCAACACAAACGTAAAAACAA 840 Query 900 TGATCTCTAATCTCAACCAGAATCTCCCGGATGCTAAATTTATTTACCTCGACATCGCTC 959 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 841 TGATCTCTAATCTCAACCAGAATCTCCCGGCTGCTAAATTTATTTACCTCGACATCGCTC 900 Query 960 ATATGTTCGAAGACATCGTTGCTAACCAAGCAGCTTATGGTCTTACTACTATGGACAAAG 1019 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 901 ATATGTTCGAAGACATCGTTGCGAACCAAGCAGCTTATGGGCTTACTACTATGGACAAAG 960 Query 1020 GATGTTGTGGAATAGGAAAAAACAGAGGACAGATCACTTGTCTTCCCTTTGAAACGCCTT 1079 ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 961 GATGTTGCGGGATAGGAAAGAACAGAGGACAGATCACTTGTCTTCCCTTTGAAACGCCTT 1020 Query 1080 GTCCTAACAGAGATCAGTATGTGTTTTGGGATGC-TTTCCATCCTACAGAGAAAGTTAAT 1138 ||||||||||||| ||||||||||||||||| || |||| ||||||| |||||||||||| Sbjct 1021 GTCCTAACAGAGACCAGTATGTGTTTTGGGACGCGTTTC-ATCCTACCGAGAAAGTTAAT 1079 Query 1139 CTCATAATGGCAAAGAAAGCGTTTGCTGGTGACCGCACTGTCGCGTACCCGATCAACATT 1198 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1080 CTCATAATGGCAAAGAAAGCGTTTGCTGGTGACCGCACTGTCGCGTATCCAATCAACATT 1139 Query 1199 CAGCAATTGGCTAGTCTCAATTAACGATTATGAA-GACTATCAACAAGACAT-AAAAA-C 1255 ||| |||||||||||||||||||||||||||||| |||||||||| ||| || ||||| | Sbjct 1140 CAGGAATTGGCTAGTCTCAATTAACGATTATGAAAGACTATCAACTAGAAATTAAAAAAC 1199 Query 1256 TTGGTGTTGTCTTTGTAGTTTCTTTTTTGTAAGGTTTTGAGTCAAATCTGTTTTCCTTTT 1315 ||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| Sbjct 1200 TTGGTGTTGTCTTTGTAGTTTCTGTTT-GTAAGATTTTGAGTCAAATCTGTTTTCCTTTT 1258 Query 1316 AAGACGTTTTGAAAACGTCTACTGTGTCACACTTAACGGTCCAAA 1360 ||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1259 GAGACGTTTTGAAAACGTCTACTGTGTCAC-CA-AACGGTCCAAA 1301 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53021621040 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5